Rmu_sc0000467.1_g000009

Polygalacturonase

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000467.1
Physical Location & Seq
Forward (+)
34677 .. 37047
2371 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000467.1_g000009.1.cds

Sequence Viewer

Length: 1497 bp
atgagtactttcaaactaagcagcctggcattgattgtgctcattgccttttctatttggtcttcgagcttgttggagacttgtgaagctagaaaaggcaagcatcatcaatggaggaaaaaccgaggggtgaaaagggattatggcggtcatcatcaacatcatcacccttcaggccacactctgtcggctttgaaaagtgacaattacatcacaccagaagatattgctgtgagtgcagcacagaagaatagtgccgtctacaatgtgttggactacggtgctaaaggagatggaaaggcagatgacacgaaggcattcgcagcagcatgggcagcagcgtgcaaagtgcaagcatcaaccgtaactgttccatctgggtctgtattccttgtcaaacctatctctttctccggccctaattgtcaaacagacattgtatttcagttagatggaaaaatcatagccccgacaggcgcgggagcgtggggttcaggccttctacaatggcttgagttcacaaagcttcaaagacttaccatcagaggtaaaggtgtgattgatggacaaggtgcagtttggtggaatgactcgcccacatacgatcctacagatgaaacagcagacaacagtacagaagattcgcagaccgtagacagttacagtggaaaaatgccaagcacaaaaccaacagcgcttaggttctatggaagcaacggtgtgacagtcactggcataacaattcaaaacagccctcaaacccacctcaagtttgactcctgcactaatgtacaagtttctgccgtaactatttcatcccccggcaacagccccaacactgatggaatccaccttcaaaactcccaggatgtggtcatttccggcgcaagccttgcttgtggagatgattgtatatcaatacaaactggctgctcaaacgtattcatacacaatgtaaactgtgggcctggacatggagtcagcattggagggctaggaaaggatggcaccaaagcttgtgtgtcaaacatcaccgtccgagatgttaaaatgcaaaatacactgaacggagtcagaataaagacctggcagggaggatcagggtcagtaagaaatgtcatgttcgcaaacattcaagtttcagaagtcgagttccctatcatgattgatcaatactactgtgacaaggggcattgcgcaaacaaaacctcagctgtggcagtttcgggtataaactacgtaaacattcaaggaacctatacatcaaaacctgcacattttgcatgcagtgacagcataccatgtactggtgtatccctagacaccatagacctaaaatcggttcaatcagggaggcacttgtatgaccctttctgttgggaggcatatggagacctcaagacaaacactgtccccccaattgattgcttgatgaaaggaaagccatcttcaagcagcagcacagtccagtctcaaggtgatggctattcttgctaa

Protein Analysis

498

Amino Acids

53.04

Weight (kDa)

6.92

Isoelectric Point (pI)

34.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1198
Acc36I ACCTGC 1 cut(s) 1279
AccB1I GGYRCC 1 cut(s) 1007
AccB7I CCANNNNNTGG 2 cut(s) 871, 1307
AccI GTMKAC 2 cut(s) 261, 654
AccII CGCG 1 cut(s) 479
AciI CCGC 2 cut(s) 147, 479
AclWI GGATC 2 cut(s) 599, 1105
AcuI CTGAAG 1 cut(s) 156
AfaI GTAC 4 cut(s) 7, 634, 792, 1306
AfeI AGCGCT 1 cut(s) 696
AfiI CCNNNNNNNGG 4 cut(s) 871, 974, 1307, 1339
AgsI TTSAA 9 cut(s) 13, 196, 530, 746, 857, 1136, 1250, 1346, 1452
AhdI GACNNNNNGTC 1 cut(s) 977
AjnI CCWGG 4 cut(s) 24, 864, 967, 1085
AluBI AGCT 5 cut(s) 69, 89, 526, 1016, 1214
AluI AGCT 5 cut(s) 69, 89, 526, 1016, 1214
Alw21I GWGCWC 1 cut(s) 42
Alw26I GTCTC 3 cut(s) 71, 1386, 1476
AlwI GGATC 2 cut(s) 599, 1105
AlwNI CAGNNNCTG 1 cut(s) 731
Aor51HI AGCGCT 1 cut(s) 696
AoxI GGCC 4 cut(s) 175, 415, 496, 965
ApeKI GCWGC 9 cut(s) 21, 239, 323, 326, 335, 338, 930, 1455, 1458
Asp700I GAANNNNTTC 1 cut(s) 317
AspLEI GCGC 4 cut(s) 479, 697, 887, 1199
AspS9I GGNCC 2 cut(s) 416, 965
AsuC2I CCSGG 1 cut(s) 822
AsuHPI GGTGA 4 cut(s) 142, 158, 1024, 1490
BaeI ACNNNNGTAYC 2 cut(s) 1296, 1329
BanI GGYRCC 1 cut(s) 1007
BbsI GAAGAC 1 cut(s) 54
Bbv12I GWGCWC 1 cut(s) 42
BbvCI CCTCAGC 1 cut(s) 1210
BbvI GCAGC 9 cut(s) 33, 251, 335, 338, 347, 350, 917, 1467, 1470
BccI CCATC 9 cut(s) 287, 382, 446, 548, 557, 836, 998, 1453, 1475
BceAI ACGGC 2 cut(s) 242, 788
BciT130I CCWGG 4 cut(s) 26, 866, 969, 1087
BciVI GTATCC 1 cut(s) 1324
BclI TGATCA 1 cut(s) 1168
BcnI CCSGG 1 cut(s) 822
BcoDI GTCTC 3 cut(s) 71, 1386, 1476
BfaI CTAG 3 cut(s) 90, 995, 1319
BfmI CTRYAG 1 cut(s) 609
BfoI RGCGCY 1 cut(s) 698
BfuAI ACCTGC 1 cut(s) 1279
BfuI GTATCC 1 cut(s) 1324
BisI GCNGC 9 cut(s) 22, 240, 324, 327, 336, 339, 931, 1456, 1459
BlsI GCNGC 9 cut(s) 23, 241, 325, 328, 337, 340, 932, 1457, 1460
BmcAI AGTACT 1 cut(s) 7
Bme1390I CCNGG 5 cut(s) 26, 822, 866, 969, 1087
BmeRI GACNNNNNGTC 1 cut(s) 977
BmgT120I GGNCC 2 cut(s) 416, 965
BmiI GGNNCC 2 cut(s) 1009, 1255
BmrFI CCNGG 5 cut(s) 26, 822, 866, 969, 1087
BmsI GCATC 2 cut(s) 112, 365
BpiI GAAGAC 1 cut(s) 54
Bpu10I CCTNAGC 2 cut(s) 698, 1210
BpuEI CTTGAG 4 cut(s) 533, 752, 1382, 1458
BpuMI CCSGG 1 cut(s) 822
BsaAI YACGTR 1 cut(s) 1240
BsaI GGTCTC 1 cut(s) 1386
BsaJI CCNNGG 3 cut(s) 124, 820, 864
Bsc4I CCNNNNNNNGG 4 cut(s) 871, 974, 1307, 1339
Bse1I ACTGG 4 cut(s) 736, 931, 1312, 1468
Bse3DI GCAATG 2 cut(s) 42, 1192
BseBI CCWGG 4 cut(s) 26, 866, 969, 1087
BseDI CCNNGG 3 cut(s) 124, 820, 864
BseGI GGATG 3 cut(s) 815, 874, 1009
BseLI CCNNNNNNNGG 4 cut(s) 871, 974, 1307, 1339
BseMI GCAATG 2 cut(s) 42, 1192
BseMII CTCAG 1 cut(s) 1224
BseNI ACTGG 4 cut(s) 736, 931, 1312, 1468
BseXI GCAGC 9 cut(s) 33, 251, 335, 338, 347, 350, 917, 1467, 1470
BsgI GTGCAG 4 cut(s) 258, 594, 766, 1257
Bsh1236I CGCG 1 cut(s) 479
BshFI GGCC 4 cut(s) 177, 417, 498, 967
BshNI GGYRCC 1 cut(s) 1007
BsiHKAI GWGCWC 1 cut(s) 42
BsiSI CCGG 3 cut(s) 414, 822, 882
BslFI GGGAC 1 cut(s) 1397
BslI CCNNNNNNNGG 4 cut(s) 871, 974, 1307, 1339
BsmAI GTCTC 3 cut(s) 71, 1386, 1476
BsmFI GGGAC 1 cut(s) 1397
BsmI GAATGC 1 cut(s) 317
BsnI GGCC 4 cut(s) 177, 417, 498, 967
Bso31I GGTCTC 1 cut(s) 1386
Bsp1286I GDGCHC 1 cut(s) 42
Bsp1407I TGTACA 1 cut(s) 790
Bsp143I GATC 3 cut(s) 604, 1097, 1168
BspACI CCGC 2 cut(s) 147, 479
BspANI GGCC 4 cut(s) 177, 417, 498, 967
BspCNI CTCAG 1 cut(s) 1223
BspFNI CGCG 1 cut(s) 479
BspHI TCATGA 1 cut(s) 1161
BspLI GGNNCC 2 cut(s) 1009, 1255
BspMI ACCTGC 1 cut(s) 1279
BspPI GGATC 2 cut(s) 599, 1105
BspT107I GGYRCC 1 cut(s) 1007
BspTNI GGTCTC 1 cut(s) 1386
BsrDI GCAATG 2 cut(s) 42, 1192
BsrGI TGTACA 1 cut(s) 790
BsrI ACTGG 4 cut(s) 736, 931, 1312, 1468
BssECI CCNNGG 3 cut(s) 124, 820, 864
BssMI GATC 3 cut(s) 604, 1097, 1168
Bst2UI CCWGG 4 cut(s) 26, 866, 969, 1087
BstAPI GCANNNNNTGC 2 cut(s) 893, 1280
BstAUI TGTACA 1 cut(s) 790
BstBAI YACGTR 1 cut(s) 1240
BstC8I GCNNGC 5 cut(s) 101, 343, 354, 889, 1285
BstDEI CTNAG 3 cut(s) 17, 698, 1210
BstF5I GGATG 3 cut(s) 815, 874, 1009
BstFNI CGCG 1 cut(s) 479
BstH2I RGCGCY 1 cut(s) 698
BstHHI GCGC 4 cut(s) 479, 697, 887, 1199
BstKTI GATC 3 cut(s) 607, 1100, 1171
BstMAI GTCTC 3 cut(s) 71, 1386, 1476
BstMBI GATC 3 cut(s) 604, 1097, 1168
BstMWI GCNNNNNNNGC 8 cut(s) 236, 323, 332, 335, 893, 1280, 1293, 1491
BstNI CCWGG 4 cut(s) 26, 866, 969, 1087
BstNSI RCATGY 1 cut(s) 1287
BstSCI CCNGG 5 cut(s) 24, 820, 864, 967, 1085
BstSFI CTRYAG 1 cut(s) 609
BstSNI TACGTA 1 cut(s) 1240
BstUI CGCG 1 cut(s) 479
BstV1I GCAGC 9 cut(s) 33, 251, 335, 338, 347, 350, 917, 1467, 1470
BstV2I GAAGAC 1 cut(s) 54
BsuI GTATCC 1 cut(s) 1324
BsuRI GGCC 4 cut(s) 177, 417, 498, 967
BtsCI GGATG 3 cut(s) 815, 874, 1009
BtsI GCAGTG 1 cut(s) 1294
BtsIMutI CAGTG 6 cut(s) 670, 729, 837, 1061, 1294, 1407
BveI ACCTGC 1 cut(s) 1279
Cac8I GCNNGC 5 cut(s) 101, 343, 354, 889, 1285
CaiI CAGNNNCTG 1 cut(s) 731
CciI TCATGA 1 cut(s) 1161
CfoI GCGC 4 cut(s) 479, 697, 887, 1199
Cfr13I GGNCC 2 cut(s) 416, 965
Csp6I GTAC 4 cut(s) 6, 633, 791, 1305
CviAII CATG 6 cut(s) 330, 974, 1120, 1162, 1284, 1302
CviQI GTAC 4 cut(s) 6, 633, 791, 1305
DdeI CTNAG 3 cut(s) 17, 698, 1210
DpnI GATC 3 cut(s) 606, 1099, 1170
DpnII GATC 3 cut(s) 604, 1097, 1168
DriI GACNNNNNGTC 1 cut(s) 977
Eam1105I GACNNNNNGTC 1 cut(s) 977
Eco105I TACGTA 1 cut(s) 1240
Eco147I AGGCCT 1 cut(s) 498
Eco31I GGTCTC 1 cut(s) 1386
Eco47III AGCGCT 1 cut(s) 696
Eco57I CTGAAG 1 cut(s) 156
EcoRII CCWGG 4 cut(s) 24, 864, 967, 1085
FaeI CATG 6 cut(s) 333, 977, 1123, 1165, 1287, 1305
FalI AAGNNNNNCTT 2 cut(s) 880, 912
FaqI GGGAC 1 cut(s) 1397
FatI CATG 6 cut(s) 329, 973, 1119, 1161, 1283, 1301
FauI CCCGC 1 cut(s) 472
FauNDI CATATG 1 cut(s) 1387
FbaI TGATCA 1 cut(s) 1168
FblI GTMKAC 2 cut(s) 261, 654
Fnu4HI GCNGC 9 cut(s) 22, 240, 324, 327, 336, 339, 931, 1456, 1459
FokI GGATG 3 cut(s) 802, 881, 1016
Fsp4HI GCNGC 9 cut(s) 22, 240, 324, 327, 336, 339, 931, 1456, 1459
FspBI CTAG 3 cut(s) 90, 995, 1319
FspI TGCGCA 1 cut(s) 1198
GlaI GCGC 4 cut(s) 478, 696, 886, 1198
GluI GCNGC 9 cut(s) 22, 240, 324, 327, 336, 339, 931, 1456, 1459
HaeII RGCGCY 1 cut(s) 698
HaeIII GGCC 4 cut(s) 177, 417, 498, 967
HapII CCGG 3 cut(s) 414, 822, 882
HhaI GCGC 4 cut(s) 479, 697, 887, 1199
Hin1II CATG 6 cut(s) 333, 977, 1123, 1165, 1287, 1305
Hin6I GCGC 4 cut(s) 477, 695, 885, 1197
HinP1I GCGC 4 cut(s) 477, 695, 885, 1197
HindIII AAGCTT 2 cut(s) 524, 1014
HinfI GANTC 6 cut(s) 590, 641, 776, 846, 978, 1071
HpaII CCGG 3 cut(s) 414, 822, 882
HphI GGTGA 4 cut(s) 142, 158, 1024, 1490
Hpy166II GTNNAC 5 cut(s) 262, 519, 655, 958, 1243
Hpy188I TCNGA 4 cut(s) 545, 1040, 1076, 1144
Hpy188III TCNNGA 2 cut(s) 1162, 1399
Hpy8I GTNNAC 5 cut(s) 262, 519, 655, 958, 1243
HpyAV CCTTC 4 cut(s) 180, 307, 509, 863
HpyCH4IV ACGT 2 cut(s) 939, 1239
HpyCH4V TGCA 9 cut(s) 239, 345, 352, 575, 783, 1054, 1274, 1283, 1287
HpyF10VI GCNNNNNNNGC 8 cut(s) 236, 323, 332, 335, 893, 1280, 1293, 1491
HpyF3I CTNAG 3 cut(s) 17, 698, 1210
HpySE526I ACGT 2 cut(s) 939, 1239
Hsp92II CATG 6 cut(s) 333, 977, 1123, 1165, 1287, 1305
HspAI GCGC 4 cut(s) 477, 695, 885, 1197
Ksp22I TGATCA 1 cut(s) 1168
Kzo9I GATC 3 cut(s) 604, 1097, 1168
LmnI GCTCC 1 cut(s) 482
Lsp1109I GCAGC 9 cut(s) 33, 251, 335, 338, 347, 350, 917, 1467, 1470
LweI GCATC 2 cut(s) 112, 365
MaeI CTAG 3 cut(s) 90, 995, 1319
MaeII ACGT 2 cut(s) 939, 1239
MaeIII GTNAC 8 cut(s) 200, 364, 659, 721, 727, 805, 1181, 1289
MalI GATC 3 cut(s) 606, 1099, 1170
MboI GATC 3 cut(s) 604, 1097, 1168
MboII GAAGA 5 cut(s) 54, 233, 259, 650, 1440
MfeI CAATTG 1 cut(s) 1419
MhlI GDGCHC 1 cut(s) 42
MluCI AATT 4 cut(s) 205, 421, 741, 1419
MlyI GAGTC 4 cut(s) 584, 770, 987, 1080
MmeI TCCRAC 2 cut(s) 54, 252
MroXI GAANNNNTTC 1 cut(s) 317
MseI TTAA 1 cut(s) 1047
MslI CAYNNNNRTG 1 cut(s) 1362
MspA1I CMGCKG 1 cut(s) 1214
MspI CCGG 3 cut(s) 414, 822, 882
MspR9I CCNGG 5 cut(s) 26, 822, 866, 969, 1087
MunI CAATTG 1 cut(s) 1419
Mva1269I GAATGC 1 cut(s) 317
MvaI CCWGG 4 cut(s) 26, 866, 969, 1087
MvnI CGCG 1 cut(s) 479
MwoI GCNNNNNNNGC 8 cut(s) 236, 323, 332, 335, 893, 1280, 1293, 1491
NciI CCSGG 1 cut(s) 822
NdeI CATATG 1 cut(s) 1387
NdeII GATC 3 cut(s) 604, 1097, 1168
NlaIII CATG 6 cut(s) 333, 977, 1123, 1165, 1287, 1305
NlaIV GGNNCC 2 cut(s) 1009, 1255
NmuCI GTSAC 5 cut(s) 200, 721, 727, 1181, 1289
NsbI TGCGCA 1 cut(s) 1198
NspI RCATGY 1 cut(s) 1287
PaeI GCATGC 1 cut(s) 1287
PagI TCATGA 1 cut(s) 1161
PceI AGGCCT 1 cut(s) 498
PctI GAATGC 1 cut(s) 317
PdmI GAANNNNTTC 1 cut(s) 317
PfeI GAWTC 2 cut(s) 641, 846
PflMI CCANNNNNTGG 2 cut(s) 871, 1307
PkrI GCNGC 9 cut(s) 23, 241, 325, 328, 337, 340, 932, 1457, 1460
PleI GAGTC 4 cut(s) 584, 770, 986, 1079
PpsI GAGTC 4 cut(s) 584, 770, 986, 1079
Ppu21I YACGTR 1 cut(s) 1240
Psp6I CCWGG 4 cut(s) 24, 864, 967, 1085
PspGI CCWGG 4 cut(s) 24, 864, 967, 1085
PspN4I GGNNCC 2 cut(s) 1009, 1255
PspPI GGNCC 2 cut(s) 416, 965
PstNI CAGNNNCTG 1 cut(s) 731
PvuII CAGCTG 1 cut(s) 1214
RsaI GTAC 4 cut(s) 7, 634, 792, 1306
RsaNI GTAC 4 cut(s) 6, 633, 791, 1305
RseI CAYNNNNRTG 1 cut(s) 1362
SaqAI TTAA 1 cut(s) 1047
SatI GCNGC 9 cut(s) 22, 240, 324, 327, 336, 339, 931, 1456, 1459
Sau3AI GATC 3 cut(s) 604, 1097, 1168
Sau96I GGNCC 2 cut(s) 416, 965
ScaI AGTACT 1 cut(s) 7
SchI GAGTC 4 cut(s) 584, 770, 987, 1080
ScrFI CCNGG 5 cut(s) 26, 822, 866, 969, 1087
SduI GDGCHC 1 cut(s) 42
SfaNI GCATC 2 cut(s) 112, 365
SfcI CTRYAG 1 cut(s) 609
SmiMI CAYNNNNRTG 1 cut(s) 1362
SmlI CTYRAG 4 cut(s) 512, 767, 1397, 1473
SmoI CTYRAG 4 cut(s) 512, 767, 1397, 1473
SnaBI TACGTA 1 cut(s) 1240
SphI GCATGC 1 cut(s) 1287
Sse9I AATT 4 cut(s) 205, 421, 741, 1419
SseBI AGGCCT 1 cut(s) 498
SsiI CCGC 2 cut(s) 147, 479
SspMI CTAG 3 cut(s) 90, 995, 1319
StuI AGGCCT 1 cut(s) 498
StyD4I CCNGG 5 cut(s) 24, 820, 864, 967, 1085
TaiI ACGT 2 cut(s) 942, 1242
TaqI TCGA 2 cut(s) 65, 1149
TasI AATT 4 cut(s) 205, 421, 741, 1419
TatI WGTACW 4 cut(s) 5, 632, 790, 1304
TfiI GAWTC 2 cut(s) 641, 846
Tru1I TTAA 1 cut(s) 1047
Tru9I TTAA 1 cut(s) 1047
TscAI CASTG 6 cut(s) 670, 736, 844, 1068, 1294, 1414
TseFI GTSAC 5 cut(s) 200, 721, 727, 1181, 1289
TseI GCWGC 9 cut(s) 21, 239, 323, 326, 335, 338, 930, 1455, 1458
Tsp45I GTSAC 5 cut(s) 200, 721, 727, 1181, 1289
TspDTI ATGAA 4 cut(s) 630, 804, 934, 1448
TspGWI ACGGA 1 cut(s) 1083
TspRI CASTG 6 cut(s) 670, 736, 844, 1068, 1294, 1414
Van91I CCANNNNNTGG 2 cut(s) 871, 1307
XceI RCATGY 1 cut(s) 1287
XmiI GTMKAC 2 cut(s) 261, 654
XmnI GAANNNNTTC 1 cut(s) 317
XspI CTAG 3 cut(s) 90, 995, 1319
ZrmI AGTACT 1 cut(s) 7
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.