Polygalacturonase
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G14650 AT5G14650 |
| fragaria_vesca | FvH4_6g50960 FvH4_6g50960 FvH4_6g50960 FvH4_6g50960 FvH4_6g50960 |
| malus_domestica | MD09G1030100.v1.1 MD09G1030200.v1.1 MD17G1032000.v1.1 |
| prunus_persica | Prupe.3G287200_v2.0.a1 |
| pyrus_communis | pycom111g02420 |
| rosa_chinensis | RchiOBHm_Chr2g0172361 |
| rosa_laevigata | RLG00000022107 |
| rosa_multiflora | Rmu_sc0000467.1_g000009 |
| rosa_roxburghii | Rroxscaffold_2G00079950 |
| rosa_rugosa | Rorug02G0558800 |
| rosa_samantha | Rh2AG633800 Rh2BG647600 Rh2CG614600 Rh2DG662400 |
| rosa_wichuraiana | Rw2G052500 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 1198 |
| Acc36I | ACCTGC | 1 cut(s) | 1279 |
| AccB1I | GGYRCC | 1 cut(s) | 1007 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 871, 1307 |
| AccI | GTMKAC | 2 cut(s) | 261, 654 |
| AccII | CGCG | 1 cut(s) | 479 |
| AciI | CCGC | 2 cut(s) | 147, 479 |
| AclWI | GGATC | 2 cut(s) | 599, 1105 |
| AcuI | CTGAAG | 1 cut(s) | 156 |
| AfaI | GTAC | 4 cut(s) | 7, 634, 792, 1306 |
| AfeI | AGCGCT | 1 cut(s) | 696 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 871, 974, 1307, 1339 |
| AgsI | TTSAA | 9 cut(s) | 13, 196, 530, 746, 857, 1136, 1250, 1346, 1452 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 977 |
| AjnI | CCWGG | 4 cut(s) | 24, 864, 967, 1085 |
| AluBI | AGCT | 5 cut(s) | 69, 89, 526, 1016, 1214 |
| AluI | AGCT | 5 cut(s) | 69, 89, 526, 1016, 1214 |
| Alw21I | GWGCWC | 1 cut(s) | 42 |
| Alw26I | GTCTC | 3 cut(s) | 71, 1386, 1476 |
| AlwI | GGATC | 2 cut(s) | 599, 1105 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 731 |
| Aor51HI | AGCGCT | 1 cut(s) | 696 |
| AoxI | GGCC | 4 cut(s) | 175, 415, 496, 965 |
| ApeKI | GCWGC | 9 cut(s) | 21, 239, 323, 326, 335, 338, 930, 1455, 1458 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 317 |
| AspLEI | GCGC | 4 cut(s) | 479, 697, 887, 1199 |
| AspS9I | GGNCC | 2 cut(s) | 416, 965 |
| AsuC2I | CCSGG | 1 cut(s) | 822 |
| AsuHPI | GGTGA | 4 cut(s) | 142, 158, 1024, 1490 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1296, 1329 |
| BanI | GGYRCC | 1 cut(s) | 1007 |
| BbsI | GAAGAC | 1 cut(s) | 54 |
| Bbv12I | GWGCWC | 1 cut(s) | 42 |
| BbvCI | CCTCAGC | 1 cut(s) | 1210 |
| BbvI | GCAGC | 9 cut(s) | 33, 251, 335, 338, 347, 350, 917, 1467, 1470 |
| BccI | CCATC | 9 cut(s) | 287, 382, 446, 548, 557, 836, 998, 1453, 1475 |
| BceAI | ACGGC | 2 cut(s) | 242, 788 |
| BciT130I | CCWGG | 4 cut(s) | 26, 866, 969, 1087 |
| BciVI | GTATCC | 1 cut(s) | 1324 |
| BclI | TGATCA | 1 cut(s) | 1168 |
| BcnI | CCSGG | 1 cut(s) | 822 |
| BcoDI | GTCTC | 3 cut(s) | 71, 1386, 1476 |
| BfaI | CTAG | 3 cut(s) | 90, 995, 1319 |
| BfmI | CTRYAG | 1 cut(s) | 609 |
| BfoI | RGCGCY | 1 cut(s) | 698 |
| BfuAI | ACCTGC | 1 cut(s) | 1279 |
| BfuI | GTATCC | 1 cut(s) | 1324 |
| BisI | GCNGC | 9 cut(s) | 22, 240, 324, 327, 336, 339, 931, 1456, 1459 |
| BlsI | GCNGC | 9 cut(s) | 23, 241, 325, 328, 337, 340, 932, 1457, 1460 |
| BmcAI | AGTACT | 1 cut(s) | 7 |
| Bme1390I | CCNGG | 5 cut(s) | 26, 822, 866, 969, 1087 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 977 |
| BmgT120I | GGNCC | 2 cut(s) | 416, 965 |
| BmiI | GGNNCC | 2 cut(s) | 1009, 1255 |
| BmrFI | CCNGG | 5 cut(s) | 26, 822, 866, 969, 1087 |
| BmsI | GCATC | 2 cut(s) | 112, 365 |
| BpiI | GAAGAC | 1 cut(s) | 54 |
| Bpu10I | CCTNAGC | 2 cut(s) | 698, 1210 |
| BpuEI | CTTGAG | 4 cut(s) | 533, 752, 1382, 1458 |
| BpuMI | CCSGG | 1 cut(s) | 822 |
| BsaAI | YACGTR | 1 cut(s) | 1240 |
| BsaI | GGTCTC | 1 cut(s) | 1386 |
| BsaJI | CCNNGG | 3 cut(s) | 124, 820, 864 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 871, 974, 1307, 1339 |
| Bse1I | ACTGG | 4 cut(s) | 736, 931, 1312, 1468 |
| Bse3DI | GCAATG | 2 cut(s) | 42, 1192 |
| BseBI | CCWGG | 4 cut(s) | 26, 866, 969, 1087 |
| BseDI | CCNNGG | 3 cut(s) | 124, 820, 864 |
| BseGI | GGATG | 3 cut(s) | 815, 874, 1009 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 871, 974, 1307, 1339 |
| BseMI | GCAATG | 2 cut(s) | 42, 1192 |
| BseMII | CTCAG | 1 cut(s) | 1224 |
| BseNI | ACTGG | 4 cut(s) | 736, 931, 1312, 1468 |
| BseXI | GCAGC | 9 cut(s) | 33, 251, 335, 338, 347, 350, 917, 1467, 1470 |
| BsgI | GTGCAG | 4 cut(s) | 258, 594, 766, 1257 |
| Bsh1236I | CGCG | 1 cut(s) | 479 |
| BshFI | GGCC | 4 cut(s) | 177, 417, 498, 967 |
| BshNI | GGYRCC | 1 cut(s) | 1007 |
| BsiHKAI | GWGCWC | 1 cut(s) | 42 |
| BsiSI | CCGG | 3 cut(s) | 414, 822, 882 |
| BslFI | GGGAC | 1 cut(s) | 1397 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 871, 974, 1307, 1339 |
| BsmAI | GTCTC | 3 cut(s) | 71, 1386, 1476 |
| BsmFI | GGGAC | 1 cut(s) | 1397 |
| BsmI | GAATGC | 1 cut(s) | 317 |
| BsnI | GGCC | 4 cut(s) | 177, 417, 498, 967 |
| Bso31I | GGTCTC | 1 cut(s) | 1386 |
| Bsp1286I | GDGCHC | 1 cut(s) | 42 |
| Bsp1407I | TGTACA | 1 cut(s) | 790 |
| Bsp143I | GATC | 3 cut(s) | 604, 1097, 1168 |
| BspACI | CCGC | 2 cut(s) | 147, 479 |
| BspANI | GGCC | 4 cut(s) | 177, 417, 498, 967 |
| BspCNI | CTCAG | 1 cut(s) | 1223 |
| BspFNI | CGCG | 1 cut(s) | 479 |
| BspHI | TCATGA | 1 cut(s) | 1161 |
| BspLI | GGNNCC | 2 cut(s) | 1009, 1255 |
| BspMI | ACCTGC | 1 cut(s) | 1279 |
| BspPI | GGATC | 2 cut(s) | 599, 1105 |
| BspT107I | GGYRCC | 1 cut(s) | 1007 |
| BspTNI | GGTCTC | 1 cut(s) | 1386 |
| BsrDI | GCAATG | 2 cut(s) | 42, 1192 |
| BsrGI | TGTACA | 1 cut(s) | 790 |
| BsrI | ACTGG | 4 cut(s) | 736, 931, 1312, 1468 |
| BssECI | CCNNGG | 3 cut(s) | 124, 820, 864 |
| BssMI | GATC | 3 cut(s) | 604, 1097, 1168 |
| Bst2UI | CCWGG | 4 cut(s) | 26, 866, 969, 1087 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 893, 1280 |
| BstAUI | TGTACA | 1 cut(s) | 790 |
| BstBAI | YACGTR | 1 cut(s) | 1240 |
| BstC8I | GCNNGC | 5 cut(s) | 101, 343, 354, 889, 1285 |
| BstDEI | CTNAG | 3 cut(s) | 17, 698, 1210 |
| BstF5I | GGATG | 3 cut(s) | 815, 874, 1009 |
| BstFNI | CGCG | 1 cut(s) | 479 |
| BstH2I | RGCGCY | 1 cut(s) | 698 |
| BstHHI | GCGC | 4 cut(s) | 479, 697, 887, 1199 |
| BstKTI | GATC | 3 cut(s) | 607, 1100, 1171 |
| BstMAI | GTCTC | 3 cut(s) | 71, 1386, 1476 |
| BstMBI | GATC | 3 cut(s) | 604, 1097, 1168 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 236, 323, 332, 335, 893, 1280, 1293, 1491 |
| BstNI | CCWGG | 4 cut(s) | 26, 866, 969, 1087 |
| BstNSI | RCATGY | 1 cut(s) | 1287 |
| BstSCI | CCNGG | 5 cut(s) | 24, 820, 864, 967, 1085 |
| BstSFI | CTRYAG | 1 cut(s) | 609 |
| BstSNI | TACGTA | 1 cut(s) | 1240 |
| BstUI | CGCG | 1 cut(s) | 479 |
| BstV1I | GCAGC | 9 cut(s) | 33, 251, 335, 338, 347, 350, 917, 1467, 1470 |
| BstV2I | GAAGAC | 1 cut(s) | 54 |
| BsuI | GTATCC | 1 cut(s) | 1324 |
| BsuRI | GGCC | 4 cut(s) | 177, 417, 498, 967 |
| BtsCI | GGATG | 3 cut(s) | 815, 874, 1009 |
| BtsI | GCAGTG | 1 cut(s) | 1294 |
| BtsIMutI | CAGTG | 6 cut(s) | 670, 729, 837, 1061, 1294, 1407 |
| BveI | ACCTGC | 1 cut(s) | 1279 |
| Cac8I | GCNNGC | 5 cut(s) | 101, 343, 354, 889, 1285 |
| CaiI | CAGNNNCTG | 1 cut(s) | 731 |
| CciI | TCATGA | 1 cut(s) | 1161 |
| CfoI | GCGC | 4 cut(s) | 479, 697, 887, 1199 |
| Cfr13I | GGNCC | 2 cut(s) | 416, 965 |
| Csp6I | GTAC | 4 cut(s) | 6, 633, 791, 1305 |
| CviAII | CATG | 6 cut(s) | 330, 974, 1120, 1162, 1284, 1302 |
| CviQI | GTAC | 4 cut(s) | 6, 633, 791, 1305 |
| DdeI | CTNAG | 3 cut(s) | 17, 698, 1210 |
| DpnI | GATC | 3 cut(s) | 606, 1099, 1170 |
| DpnII | GATC | 3 cut(s) | 604, 1097, 1168 |
| DriI | GACNNNNNGTC | 1 cut(s) | 977 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 977 |
| Eco105I | TACGTA | 1 cut(s) | 1240 |
| Eco147I | AGGCCT | 1 cut(s) | 498 |
| Eco31I | GGTCTC | 1 cut(s) | 1386 |
| Eco47III | AGCGCT | 1 cut(s) | 696 |
| Eco57I | CTGAAG | 1 cut(s) | 156 |
| EcoRII | CCWGG | 4 cut(s) | 24, 864, 967, 1085 |
| FaeI | CATG | 6 cut(s) | 333, 977, 1123, 1165, 1287, 1305 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 880, 912 |
| FaqI | GGGAC | 1 cut(s) | 1397 |
| FatI | CATG | 6 cut(s) | 329, 973, 1119, 1161, 1283, 1301 |
| FauI | CCCGC | 1 cut(s) | 472 |
| FauNDI | CATATG | 1 cut(s) | 1387 |
| FbaI | TGATCA | 1 cut(s) | 1168 |
| FblI | GTMKAC | 2 cut(s) | 261, 654 |
| Fnu4HI | GCNGC | 9 cut(s) | 22, 240, 324, 327, 336, 339, 931, 1456, 1459 |
| FokI | GGATG | 3 cut(s) | 802, 881, 1016 |
| Fsp4HI | GCNGC | 9 cut(s) | 22, 240, 324, 327, 336, 339, 931, 1456, 1459 |
| FspBI | CTAG | 3 cut(s) | 90, 995, 1319 |
| FspI | TGCGCA | 1 cut(s) | 1198 |
| GlaI | GCGC | 4 cut(s) | 478, 696, 886, 1198 |
| GluI | GCNGC | 9 cut(s) | 22, 240, 324, 327, 336, 339, 931, 1456, 1459 |
| HaeII | RGCGCY | 1 cut(s) | 698 |
| HaeIII | GGCC | 4 cut(s) | 177, 417, 498, 967 |
| HapII | CCGG | 3 cut(s) | 414, 822, 882 |
| HhaI | GCGC | 4 cut(s) | 479, 697, 887, 1199 |
| Hin1II | CATG | 6 cut(s) | 333, 977, 1123, 1165, 1287, 1305 |
| Hin6I | GCGC | 4 cut(s) | 477, 695, 885, 1197 |
| HinP1I | GCGC | 4 cut(s) | 477, 695, 885, 1197 |
| HindIII | AAGCTT | 2 cut(s) | 524, 1014 |
| HinfI | GANTC | 6 cut(s) | 590, 641, 776, 846, 978, 1071 |
| HpaII | CCGG | 3 cut(s) | 414, 822, 882 |
| HphI | GGTGA | 4 cut(s) | 142, 158, 1024, 1490 |
| Hpy166II | GTNNAC | 5 cut(s) | 262, 519, 655, 958, 1243 |
| Hpy188I | TCNGA | 4 cut(s) | 545, 1040, 1076, 1144 |
| Hpy188III | TCNNGA | 2 cut(s) | 1162, 1399 |
| Hpy8I | GTNNAC | 5 cut(s) | 262, 519, 655, 958, 1243 |
| HpyAV | CCTTC | 4 cut(s) | 180, 307, 509, 863 |
| HpyCH4IV | ACGT | 2 cut(s) | 939, 1239 |
| HpyCH4V | TGCA | 9 cut(s) | 239, 345, 352, 575, 783, 1054, 1274, 1283, 1287 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 236, 323, 332, 335, 893, 1280, 1293, 1491 |
| HpyF3I | CTNAG | 3 cut(s) | 17, 698, 1210 |
| HpySE526I | ACGT | 2 cut(s) | 939, 1239 |
| Hsp92II | CATG | 6 cut(s) | 333, 977, 1123, 1165, 1287, 1305 |
| HspAI | GCGC | 4 cut(s) | 477, 695, 885, 1197 |
| Ksp22I | TGATCA | 1 cut(s) | 1168 |
| Kzo9I | GATC | 3 cut(s) | 604, 1097, 1168 |
| LmnI | GCTCC | 1 cut(s) | 482 |
| Lsp1109I | GCAGC | 9 cut(s) | 33, 251, 335, 338, 347, 350, 917, 1467, 1470 |
| LweI | GCATC | 2 cut(s) | 112, 365 |
| MaeI | CTAG | 3 cut(s) | 90, 995, 1319 |
| MaeII | ACGT | 2 cut(s) | 939, 1239 |
| MaeIII | GTNAC | 8 cut(s) | 200, 364, 659, 721, 727, 805, 1181, 1289 |
| MalI | GATC | 3 cut(s) | 606, 1099, 1170 |
| MboI | GATC | 3 cut(s) | 604, 1097, 1168 |
| MboII | GAAGA | 5 cut(s) | 54, 233, 259, 650, 1440 |
| MfeI | CAATTG | 1 cut(s) | 1419 |
| MhlI | GDGCHC | 1 cut(s) | 42 |
| MluCI | AATT | 4 cut(s) | 205, 421, 741, 1419 |
| MlyI | GAGTC | 4 cut(s) | 584, 770, 987, 1080 |
| MmeI | TCCRAC | 2 cut(s) | 54, 252 |
| MroXI | GAANNNNTTC | 1 cut(s) | 317 |
| MseI | TTAA | 1 cut(s) | 1047 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1362 |
| MspA1I | CMGCKG | 1 cut(s) | 1214 |
| MspI | CCGG | 3 cut(s) | 414, 822, 882 |
| MspR9I | CCNGG | 5 cut(s) | 26, 822, 866, 969, 1087 |
| MunI | CAATTG | 1 cut(s) | 1419 |
| Mva1269I | GAATGC | 1 cut(s) | 317 |
| MvaI | CCWGG | 4 cut(s) | 26, 866, 969, 1087 |
| MvnI | CGCG | 1 cut(s) | 479 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 236, 323, 332, 335, 893, 1280, 1293, 1491 |
| NciI | CCSGG | 1 cut(s) | 822 |
| NdeI | CATATG | 1 cut(s) | 1387 |
| NdeII | GATC | 3 cut(s) | 604, 1097, 1168 |
| NlaIII | CATG | 6 cut(s) | 333, 977, 1123, 1165, 1287, 1305 |
| NlaIV | GGNNCC | 2 cut(s) | 1009, 1255 |
| NmuCI | GTSAC | 5 cut(s) | 200, 721, 727, 1181, 1289 |
| NsbI | TGCGCA | 1 cut(s) | 1198 |
| NspI | RCATGY | 1 cut(s) | 1287 |
| PaeI | GCATGC | 1 cut(s) | 1287 |
| PagI | TCATGA | 1 cut(s) | 1161 |
| PceI | AGGCCT | 1 cut(s) | 498 |
| PctI | GAATGC | 1 cut(s) | 317 |
| PdmI | GAANNNNTTC | 1 cut(s) | 317 |
| PfeI | GAWTC | 2 cut(s) | 641, 846 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 871, 1307 |
| PkrI | GCNGC | 9 cut(s) | 23, 241, 325, 328, 337, 340, 932, 1457, 1460 |
| PleI | GAGTC | 4 cut(s) | 584, 770, 986, 1079 |
| PpsI | GAGTC | 4 cut(s) | 584, 770, 986, 1079 |
| Ppu21I | YACGTR | 1 cut(s) | 1240 |
| Psp6I | CCWGG | 4 cut(s) | 24, 864, 967, 1085 |
| PspGI | CCWGG | 4 cut(s) | 24, 864, 967, 1085 |
| PspN4I | GGNNCC | 2 cut(s) | 1009, 1255 |
| PspPI | GGNCC | 2 cut(s) | 416, 965 |
| PstNI | CAGNNNCTG | 1 cut(s) | 731 |
| PvuII | CAGCTG | 1 cut(s) | 1214 |
| RsaI | GTAC | 4 cut(s) | 7, 634, 792, 1306 |
| RsaNI | GTAC | 4 cut(s) | 6, 633, 791, 1305 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1362 |
| SaqAI | TTAA | 1 cut(s) | 1047 |
| SatI | GCNGC | 9 cut(s) | 22, 240, 324, 327, 336, 339, 931, 1456, 1459 |
| Sau3AI | GATC | 3 cut(s) | 604, 1097, 1168 |
| Sau96I | GGNCC | 2 cut(s) | 416, 965 |
| ScaI | AGTACT | 1 cut(s) | 7 |
| SchI | GAGTC | 4 cut(s) | 584, 770, 987, 1080 |
| ScrFI | CCNGG | 5 cut(s) | 26, 822, 866, 969, 1087 |
| SduI | GDGCHC | 1 cut(s) | 42 |
| SfaNI | GCATC | 2 cut(s) | 112, 365 |
| SfcI | CTRYAG | 1 cut(s) | 609 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1362 |
| SmlI | CTYRAG | 4 cut(s) | 512, 767, 1397, 1473 |
| SmoI | CTYRAG | 4 cut(s) | 512, 767, 1397, 1473 |
| SnaBI | TACGTA | 1 cut(s) | 1240 |
| SphI | GCATGC | 1 cut(s) | 1287 |
| Sse9I | AATT | 4 cut(s) | 205, 421, 741, 1419 |
| SseBI | AGGCCT | 1 cut(s) | 498 |
| SsiI | CCGC | 2 cut(s) | 147, 479 |
| SspMI | CTAG | 3 cut(s) | 90, 995, 1319 |
| StuI | AGGCCT | 1 cut(s) | 498 |
| StyD4I | CCNGG | 5 cut(s) | 24, 820, 864, 967, 1085 |
| TaiI | ACGT | 2 cut(s) | 942, 1242 |
| TaqI | TCGA | 2 cut(s) | 65, 1149 |
| TasI | AATT | 4 cut(s) | 205, 421, 741, 1419 |
| TatI | WGTACW | 4 cut(s) | 5, 632, 790, 1304 |
| TfiI | GAWTC | 2 cut(s) | 641, 846 |
| Tru1I | TTAA | 1 cut(s) | 1047 |
| Tru9I | TTAA | 1 cut(s) | 1047 |
| TscAI | CASTG | 6 cut(s) | 670, 736, 844, 1068, 1294, 1414 |
| TseFI | GTSAC | 5 cut(s) | 200, 721, 727, 1181, 1289 |
| TseI | GCWGC | 9 cut(s) | 21, 239, 323, 326, 335, 338, 930, 1455, 1458 |
| Tsp45I | GTSAC | 5 cut(s) | 200, 721, 727, 1181, 1289 |
| TspDTI | ATGAA | 4 cut(s) | 630, 804, 934, 1448 |
| TspGWI | ACGGA | 1 cut(s) | 1083 |
| TspRI | CASTG | 6 cut(s) | 670, 736, 844, 1068, 1294, 1414 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 871, 1307 |
| XceI | RCATGY | 1 cut(s) | 1287 |
| XmiI | GTMKAC | 2 cut(s) | 261, 654 |
| XmnI | GAANNNNTTC | 1 cut(s) | 317 |
| XspI | CTAG | 3 cut(s) | 90, 995, 1319 |
| ZrmI | AGTACT | 1 cut(s) | 7 |