Polygalacturonase
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G14650 AT5G14650 |
| fragaria_vesca | FvH4_6g50960 FvH4_6g50960 FvH4_6g50960 FvH4_6g50960 FvH4_6g50960 |
| malus_domestica | MD09G1030100.v1.1 MD09G1030200.v1.1 MD17G1032000.v1.1 |
| prunus_persica | Prupe.3G287200_v2.0.a1 |
| pyrus_communis | pycom111g02420 |
| rosa_chinensis | RchiOBHm_Chr2g0172361 |
| rosa_laevigata | RLG00000022107 |
| rosa_multiflora | Rmu_sc0000467.1_g000009 |
| rosa_roxburghii | Rroxscaffold_2G00079950 |
| rosa_rugosa | Rorug02G0558800 |
| rosa_samantha | Rh2AG633800 Rh2BG647600 Rh2CG614600 Rh2DG662400 |
| rosa_wichuraiana | Rw2G052500 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 1201 |
| Acc36I | ACCTGC | 1 cut(s) | 1282 |
| AccB1I | GGYRCC | 2 cut(s) | 257, 1010 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 874, 1310 |
| AccI | GTMKAC | 2 cut(s) | 264, 657 |
| AciI | CCGC | 3 cut(s) | 158, 341, 482 |
| AclWI | GGATC | 1 cut(s) | 1108 |
| AcoI | YGGCCR | 2 cut(s) | 876, 1221 |
| AcsI | RAATTY | 1 cut(s) | 1154 |
| AcuI | CTGAAG | 4 cut(s) | 159, 252, 842, 1497 |
| AdeI | CACNNNGTG | 1 cut(s) | 187 |
| AfaI | GTAC | 3 cut(s) | 637, 795, 1309 |
| AfeI | AGCGCT | 2 cut(s) | 699, 1361 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 874, 977, 1310 |
| AgeI | ACCGGT | 1 cut(s) | 929 |
| AgsI | TTSAA | 9 cut(s) | 13, 533, 749, 939, 1139, 1154, 1253, 1349, 1455 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 980 |
| AjiI | CACGTC | 1 cut(s) | 874 |
| AjnI | CCWGG | 4 cut(s) | 24, 867, 970, 1088 |
| AluBI | AGCT | 9 cut(s) | 69, 89, 451, 488, 529, 764, 1019, 1217, 1464 |
| AluI | AGCT | 9 cut(s) | 69, 89, 451, 488, 529, 764, 1019, 1217, 1464 |
| Alw26I | GTCTC | 2 cut(s) | 71, 1147 |
| AlwI | GGATC | 1 cut(s) | 1108 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 734 |
| Aor51HI | AGCGCT | 2 cut(s) | 699, 1361 |
| AoxI | GGCC | 5 cut(s) | 178, 418, 499, 876, 1221 |
| ApeKI | GCWGC | 6 cut(s) | 21, 242, 329, 338, 1458, 1461 |
| ApoI | RAATTY | 1 cut(s) | 1154 |
| AsiGI | ACCGGT | 1 cut(s) | 929 |
| AspLEI | GCGC | 5 cut(s) | 247, 700, 890, 1202, 1362 |
| AspS9I | GGNCC | 2 cut(s) | 419, 968 |
| AsuC2I | CCSGG | 1 cut(s) | 825 |
| AsuHPI | GGTGA | 4 cut(s) | 161, 305, 758, 1027 |
| AvaII | GGWCC | 1 cut(s) | 968 |
| BaeI | ACNNNNGTAYC | 4 cut(s) | 219, 252, 1299, 1332 |
| BalI | TGGCCA | 1 cut(s) | 878 |
| BanI | GGYRCC | 2 cut(s) | 257, 1010 |
| BbsI | GAAGAC | 2 cut(s) | 54, 1443 |
| BbvCI | CCTCAGC | 1 cut(s) | 1213 |
| BbvI | GCAGC | 6 cut(s) | 33, 254, 341, 350, 1470, 1473 |
| BccI | CCATC | 5 cut(s) | 290, 385, 560, 839, 1001 |
| BceAI | ACGGC | 4 cut(s) | 245, 791, 1208, 1432 |
| BciT130I | CCWGG | 4 cut(s) | 26, 869, 972, 1090 |
| BciVI | GTATCC | 1 cut(s) | 1327 |
| BclI | TGATCA | 1 cut(s) | 1171 |
| BcnI | CCSGG | 1 cut(s) | 825 |
| BcoDI | GTCTC | 2 cut(s) | 71, 1147 |
| BfaI | CTAG | 4 cut(s) | 90, 452, 998, 1322 |
| BfmI | CTRYAG | 1 cut(s) | 612 |
| BfoI | RGCGCY | 2 cut(s) | 701, 1363 |
| BfuAI | ACCTGC | 1 cut(s) | 1282 |
| BfuI | GTATCC | 1 cut(s) | 1327 |
| BisI | GCNGC | 7 cut(s) | 22, 243, 330, 339, 342, 1459, 1462 |
| BlsI | GCNGC | 7 cut(s) | 23, 244, 331, 340, 343, 1460, 1463 |
| Bme1390I | CCNGG | 5 cut(s) | 26, 825, 869, 972, 1090 |
| Bme18I | GGWCC | 1 cut(s) | 968 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 980 |
| BmgBI | CACGTC | 1 cut(s) | 874 |
| BmgT120I | GGNCC | 2 cut(s) | 419, 968 |
| BmiI | GGNNCC | 3 cut(s) | 259, 1012, 1258 |
| BmrFI | CCNGG | 5 cut(s) | 26, 825, 869, 972, 1090 |
| BmsI | GCATC | 3 cut(s) | 112, 169, 368 |
| BpiI | GAAGAC | 2 cut(s) | 54, 1443 |
| Bpu10I | CCTNAGC | 2 cut(s) | 701, 1213 |
| BpuEI | CTTGAG | 4 cut(s) | 536, 744, 755, 1385 |
| BpuMI | CCSGG | 1 cut(s) | 825 |
| BsaJI | CCNNGG | 3 cut(s) | 124, 823, 867 |
| BsaWI | WCCGGW | 1 cut(s) | 929 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 874, 977, 1310 |
| Bse118I | RCCGGY | 1 cut(s) | 929 |
| Bse1I | ACTGG | 3 cut(s) | 739, 1315, 1471 |
| Bse3DI | GCAATG | 3 cut(s) | 42, 724, 1195 |
| BseBI | CCWGG | 4 cut(s) | 26, 869, 972, 1090 |
| BseDI | CCNNGG | 3 cut(s) | 124, 823, 867 |
| BseGI | GGATG | 2 cut(s) | 818, 1012 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 874, 977, 1310 |
| BseMI | GCAATG | 3 cut(s) | 42, 724, 1195 |
| BseMII | CTCAG | 2 cut(s) | 1158, 1227 |
| BseNI | ACTGG | 3 cut(s) | 739, 1315, 1471 |
| BseXI | GCAGC | 6 cut(s) | 33, 254, 341, 350, 1470, 1473 |
| BseYI | CCCAGC | 1 cut(s) | 1380 |
| BsgI | GTGCAG | 4 cut(s) | 261, 597, 769, 1260 |
| BshFI | GGCC | 5 cut(s) | 180, 420, 501, 878, 1223 |
| BshNI | GGYRCC | 2 cut(s) | 257, 1010 |
| BshTI | ACCGGT | 1 cut(s) | 929 |
| BsiSI | CCGG | 3 cut(s) | 417, 825, 930 |
| BslFI | GGGAC | 2 cut(s) | 142, 1400 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 874, 977, 1310 |
| BsmAI | GTCTC | 2 cut(s) | 71, 1147 |
| BsmFI | GGGAC | 2 cut(s) | 142, 1400 |
| BsnI | GGCC | 5 cut(s) | 180, 420, 501, 878, 1223 |
| Bsp1407I | TGTACA | 1 cut(s) | 793 |
| Bsp143I | GATC | 2 cut(s) | 1100, 1171 |
| BspACI | CCGC | 3 cut(s) | 158, 341, 482 |
| BspANI | GGCC | 5 cut(s) | 180, 420, 501, 878, 1223 |
| BspCNI | CTCAG | 2 cut(s) | 1157, 1226 |
| BspLI | GGNNCC | 3 cut(s) | 259, 1012, 1258 |
| BspMI | ACCTGC | 1 cut(s) | 1282 |
| BspPI | GGATC | 1 cut(s) | 1108 |
| BspT107I | GGYRCC | 2 cut(s) | 257, 1010 |
| BsrDI | GCAATG | 3 cut(s) | 42, 724, 1195 |
| BsrFI | RCCGGY | 1 cut(s) | 929 |
| BsrGI | TGTACA | 1 cut(s) | 793 |
| BsrI | ACTGG | 3 cut(s) | 739, 1315, 1471 |
| BssAI | RCCGGY | 1 cut(s) | 929 |
| BssECI | CCNNGG | 3 cut(s) | 124, 823, 867 |
| BssMI | GATC | 2 cut(s) | 1100, 1171 |
| Bst2UI | CCWGG | 4 cut(s) | 26, 869, 972, 1090 |
| Bst4CI | ACNGT | 9 cut(s) | 367, 373, 635, 655, 662, 730, 965, 1039, 1414 |
| Bst6I | CTCTTC | 1 cut(s) | 245 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 896, 1283 |
| BstAUI | TGTACA | 1 cut(s) | 793 |
| BstC8I | GCNNGC | 5 cut(s) | 101, 346, 357, 892, 1288 |
| BstDEI | CTNAG | 5 cut(s) | 17, 315, 701, 1144, 1213 |
| BstF5I | GGATG | 2 cut(s) | 818, 1012 |
| BstH2I | RGCGCY | 2 cut(s) | 701, 1363 |
| BstHHI | GCGC | 5 cut(s) | 247, 700, 890, 1202, 1362 |
| BstKTI | GATC | 2 cut(s) | 1103, 1174 |
| BstMAI | GTCTC | 2 cut(s) | 71, 1147 |
| BstMBI | GATC | 2 cut(s) | 1100, 1171 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 326, 335, 338, 896, 1283, 1296, 1494 |
| BstNI | CCWGG | 4 cut(s) | 26, 869, 972, 1090 |
| BstNSI | RCATGY | 1 cut(s) | 1290 |
| BstSCI | CCNGG | 5 cut(s) | 24, 823, 867, 970, 1088 |
| BstSFI | CTRYAG | 1 cut(s) | 612 |
| BstV1I | GCAGC | 6 cut(s) | 33, 254, 341, 350, 1470, 1473 |
| BstV2I | GAAGAC | 2 cut(s) | 54, 1443 |
| BsuI | GTATCC | 1 cut(s) | 1327 |
| BsuRI | GGCC | 5 cut(s) | 180, 420, 501, 878, 1223 |
| BtrI | CACGTC | 1 cut(s) | 874 |
| BtsCI | GGATG | 2 cut(s) | 818, 1012 |
| BtsI | GCAGTG | 2 cut(s) | 585, 1297 |
| BtsIMutI | CAGTG | 5 cut(s) | 585, 732, 1116, 1297, 1410 |
| BveI | ACCTGC | 1 cut(s) | 1282 |
| Cac8I | GCNNGC | 5 cut(s) | 101, 346, 357, 892, 1288 |
| CaiI | CAGNNNCTG | 1 cut(s) | 734 |
| CfoI | GCGC | 5 cut(s) | 247, 700, 890, 1202, 1362 |
| Cfr10I | RCCGGY | 1 cut(s) | 929 |
| Cfr13I | GGNCC | 2 cut(s) | 419, 968 |
| Csp6I | GTAC | 3 cut(s) | 636, 794, 1308 |
| CspAI | ACCGGT | 1 cut(s) | 929 |
| CviAII | CATG | 5 cut(s) | 30, 977, 1123, 1287, 1305 |
| CviQI | GTAC | 3 cut(s) | 636, 794, 1308 |
| DdeI | CTNAG | 5 cut(s) | 17, 315, 701, 1144, 1213 |
| DpnI | GATC | 2 cut(s) | 1102, 1173 |
| DpnII | GATC | 2 cut(s) | 1100, 1171 |
| DraIII | CACNNNGTG | 1 cut(s) | 187 |
| DriI | GACNNNNNGTC | 1 cut(s) | 980 |
| EaeI | YGGCCR | 2 cut(s) | 876, 1221 |
| Eam1104I | CTCTTC | 1 cut(s) | 245 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 980 |
| EarI | CTCTTC | 1 cut(s) | 245 |
| Eco147I | AGGCCT | 1 cut(s) | 501 |
| Eco47I | GGWCC | 1 cut(s) | 968 |
| Eco47III | AGCGCT | 2 cut(s) | 699, 1361 |
| Eco57I | CTGAAG | 4 cut(s) | 159, 252, 842, 1497 |
| EcoRI | GAATTC | 1 cut(s) | 1154 |
| EcoRII | CCWGG | 4 cut(s) | 24, 867, 970, 1088 |
| FaeI | CATG | 5 cut(s) | 33, 980, 1126, 1290, 1308 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 883, 915 |
| FaqI | GGGAC | 2 cut(s) | 142, 1400 |
| FatI | CATG | 5 cut(s) | 29, 976, 1122, 1286, 1304 |
| FauI | CCCGC | 1 cut(s) | 475 |
| FbaI | TGATCA | 1 cut(s) | 1171 |
| FblI | GTMKAC | 2 cut(s) | 264, 657 |
| Fnu4HI | GCNGC | 7 cut(s) | 22, 243, 330, 339, 342, 1459, 1462 |
| FokI | GGATG | 2 cut(s) | 805, 1019 |
| Fsp4HI | GCNGC | 7 cut(s) | 22, 243, 330, 339, 342, 1459, 1462 |
| FspBI | CTAG | 4 cut(s) | 90, 452, 998, 1322 |
| FspI | TGCGCA | 1 cut(s) | 1201 |
| GlaI | GCGC | 5 cut(s) | 246, 699, 889, 1201, 1361 |
| GluI | GCNGC | 7 cut(s) | 22, 243, 330, 339, 342, 1459, 1462 |
| GsaI | CCCAGC | 1 cut(s) | 1384 |
| HaeII | RGCGCY | 2 cut(s) | 701, 1363 |
| HaeIII | GGCC | 5 cut(s) | 180, 420, 501, 878, 1223 |
| HapII | CCGG | 3 cut(s) | 417, 825, 930 |
| HhaI | GCGC | 5 cut(s) | 247, 700, 890, 1202, 1362 |
| Hin1II | CATG | 5 cut(s) | 33, 980, 1126, 1290, 1308 |
| Hin6I | GCGC | 5 cut(s) | 245, 698, 888, 1200, 1360 |
| HinP1I | GCGC | 5 cut(s) | 245, 698, 888, 1200, 1360 |
| HincII | GTYRAC | 1 cut(s) | 431 |
| HindII | GTYRAC | 1 cut(s) | 431 |
| HindIII | AAGCTT | 2 cut(s) | 527, 1017 |
| HinfI | GANTC | 6 cut(s) | 593, 644, 779, 849, 981, 1074 |
| HpaII | CCGG | 3 cut(s) | 417, 825, 930 |
| HphI | GGTGA | 4 cut(s) | 161, 305, 758, 1027 |
| Hpy166II | GTNNAC | 7 cut(s) | 265, 431, 522, 658, 961, 968, 1246 |
| Hpy188I | TCNGA | 6 cut(s) | 548, 861, 1043, 1079, 1147, 1477 |
| Hpy188III | TCNNGA | 1 cut(s) | 1402 |
| Hpy8I | GTNNAC | 7 cut(s) | 265, 431, 522, 658, 961, 968, 1246 |
| HpyAV | CCTTC | 3 cut(s) | 183, 866, 1472 |
| HpyCH4III | ACNGT | 9 cut(s) | 367, 373, 635, 655, 662, 730, 965, 1039, 1414 |
| HpyCH4IV | ACGT | 2 cut(s) | 873, 942 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 326, 335, 338, 896, 1283, 1296, 1494 |
| HpyF3I | CTNAG | 5 cut(s) | 17, 315, 701, 1144, 1213 |
| HpySE526I | ACGT | 2 cut(s) | 873, 942 |
| Hsp92II | CATG | 5 cut(s) | 33, 980, 1126, 1290, 1308 |
| HspAI | GCGC | 5 cut(s) | 245, 698, 888, 1200, 1360 |
| Ksp22I | TGATCA | 1 cut(s) | 1171 |
| Kzo9I | GATC | 2 cut(s) | 1100, 1171 |
| LmnI | GCTCC | 1 cut(s) | 485 |
| Lsp1109I | GCAGC | 6 cut(s) | 33, 254, 341, 350, 1470, 1473 |
| LweI | GCATC | 3 cut(s) | 112, 169, 368 |
| MaeI | CTAG | 4 cut(s) | 90, 452, 998, 1322 |
| MaeII | ACGT | 2 cut(s) | 873, 942 |
| MaeIII | GTNAC | 8 cut(s) | 140, 203, 367, 662, 724, 730, 808, 1292 |
| MalI | GATC | 2 cut(s) | 1102, 1173 |
| MboI | GATC | 2 cut(s) | 1100, 1171 |
| MboII | GAAGA | 5 cut(s) | 54, 236, 262, 653, 1443 |
| MlsI | TGGCCA | 1 cut(s) | 878 |
| MluCI | AATT | 5 cut(s) | 208, 424, 744, 1154, 1175 |
| MluNI | TGGCCA | 1 cut(s) | 878 |
| MlyI | GAGTC | 4 cut(s) | 587, 773, 990, 1083 |
| MmeI | TCCRAC | 1 cut(s) | 54 |
| Mox20I | TGGCCA | 1 cut(s) | 878 |
| MscI | TGGCCA | 1 cut(s) | 878 |
| MseI | TTAA | 1 cut(s) | 1050 |
| Msp20I | TGGCCA | 1 cut(s) | 878 |
| MspA1I | CMGCKG | 2 cut(s) | 341, 1217 |
| MspI | CCGG | 3 cut(s) | 417, 825, 930 |
| MspR9I | CCNGG | 5 cut(s) | 26, 825, 869, 972, 1090 |
| MvaI | CCWGG | 4 cut(s) | 26, 869, 972, 1090 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 326, 335, 338, 896, 1283, 1296, 1494 |
| NciI | CCSGG | 1 cut(s) | 825 |
| NdeII | GATC | 2 cut(s) | 1100, 1171 |
| NlaIII | CATG | 5 cut(s) | 33, 980, 1126, 1290, 1308 |
| NlaIV | GGNNCC | 3 cut(s) | 259, 1012, 1258 |
| NmuCI | GTSAC | 4 cut(s) | 203, 724, 730, 1292 |
| NsbI | TGCGCA | 1 cut(s) | 1201 |
| NspI | RCATGY | 1 cut(s) | 1290 |
| PaeI | GCATGC | 1 cut(s) | 1290 |
| PceI | AGGCCT | 1 cut(s) | 501 |
| PfeI | GAWTC | 2 cut(s) | 644, 849 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 874, 1310 |
| PinAI | ACCGGT | 1 cut(s) | 929 |
| PkrI | GCNGC | 7 cut(s) | 23, 244, 331, 340, 343, 1460, 1463 |
| PleI | GAGTC | 4 cut(s) | 587, 773, 989, 1082 |
| PpsI | GAGTC | 4 cut(s) | 587, 773, 989, 1082 |
| Psp6I | CCWGG | 4 cut(s) | 24, 867, 970, 1088 |
| PspFI | CCCAGC | 1 cut(s) | 1380 |
| PspGI | CCWGG | 4 cut(s) | 24, 867, 970, 1088 |
| PspN4I | GGNNCC | 3 cut(s) | 259, 1012, 1258 |
| PspPI | GGNCC | 2 cut(s) | 419, 968 |
| PstNI | CAGNNNCTG | 1 cut(s) | 734 |
| PvuII | CAGCTG | 1 cut(s) | 1217 |
| RsaI | GTAC | 3 cut(s) | 637, 795, 1309 |
| RsaNI | GTAC | 3 cut(s) | 636, 794, 1308 |
| SaqAI | TTAA | 1 cut(s) | 1050 |
| SatI | GCNGC | 7 cut(s) | 22, 243, 330, 339, 342, 1459, 1462 |
| Sau3AI | GATC | 2 cut(s) | 1100, 1171 |
| Sau96I | GGNCC | 2 cut(s) | 419, 968 |
| SchI | GAGTC | 4 cut(s) | 587, 773, 990, 1083 |
| ScrFI | CCNGG | 5 cut(s) | 26, 825, 869, 972, 1090 |
| SfaNI | GCATC | 3 cut(s) | 112, 169, 368 |
| SfcI | CTRYAG | 1 cut(s) | 612 |
| SinI | GGWCC | 1 cut(s) | 968 |
| SmlI | CTYRAG | 4 cut(s) | 515, 759, 770, 1400 |
| SmoI | CTYRAG | 4 cut(s) | 515, 759, 770, 1400 |
| SphI | GCATGC | 1 cut(s) | 1290 |
| Sse9I | AATT | 5 cut(s) | 208, 424, 744, 1154, 1175 |
| SseBI | AGGCCT | 1 cut(s) | 501 |
| SsiI | CCGC | 3 cut(s) | 158, 341, 482 |
| SspMI | CTAG | 4 cut(s) | 90, 452, 998, 1322 |
| StuI | AGGCCT | 1 cut(s) | 501 |
| StyD4I | CCNGG | 5 cut(s) | 24, 823, 867, 970, 1088 |
| TaaI | ACNGT | 9 cut(s) | 367, 373, 635, 655, 662, 730, 965, 1039, 1414 |
| TaiI | ACGT | 2 cut(s) | 876, 945 |
| TaqI | TCGA | 2 cut(s) | 65, 1268 |
| TasI | AATT | 5 cut(s) | 208, 424, 744, 1154, 1175 |
| TatI | WGTACW | 3 cut(s) | 635, 793, 1307 |
| TauI | GCSGC | 1 cut(s) | 344 |
| TfiI | GAWTC | 2 cut(s) | 644, 849 |
| Tru1I | TTAA | 1 cut(s) | 1050 |
| Tru9I | TTAA | 1 cut(s) | 1050 |
| TscAI | CASTG | 5 cut(s) | 585, 739, 1116, 1297, 1417 |
| TseFI | GTSAC | 4 cut(s) | 203, 724, 730, 1292 |
| TseI | GCWGC | 6 cut(s) | 21, 242, 329, 338, 1458, 1461 |
| Tsp45I | GTSAC | 4 cut(s) | 203, 724, 730, 1292 |
| TspDTI | ATGAA | 4 cut(s) | 633, 807, 937, 1451 |
| TspGWI | ACGGA | 2 cut(s) | 471, 1086 |
| TspRI | CASTG | 5 cut(s) | 585, 739, 1116, 1297, 1417 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 874, 1310 |
| VpaK11BI | GGWCC | 1 cut(s) | 968 |
| XapI | RAATTY | 1 cut(s) | 1154 |
| XceI | RCATGY | 1 cut(s) | 1290 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1478 |
| XmiI | GTMKAC | 2 cut(s) | 264, 657 |
| XspI | CTAG | 4 cut(s) | 90, 452, 998, 1322 |