FvH4_6g50960

Polygalacturonase

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Reverse (-)
37840437 .. 37843331
2895 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g50960.t3

Sequence Viewer

Length: 1500 bp
ATGAGAACTTTCAAACTAAGCAGCCTGGCATGGATTATGCTCATTGCCTTTTCTATTTGGTCTTCGAGCTTGTTGGAGACTTGTGAAGCTAGAAAAGGCAAGCATCATCAATGGAGGAAACACCGAGGGACGAAAAGGGGTAACGGGGGTCGGTGTCCGCATCATCATCACCCTTCAGGCCACTCTGTGTCTGTTTTGAGAAGTGACAATTACATCACAGAGGAAGATACTGAAGTGAGTGCAGCGCAGAAGAGTGGTGCCGTCTACAATGTATTGGACTATGGTGCTAAAGGTGATGGAAAGGCAGATGACACTAAGGCGTTCGTAGCAGCGTGGGCAGCGGCGTGCAAAGTGCAAGCATCAACTGTAACCGTTCCATCTGGGTCTGTATTCCTTGTCAAACCTATCTCCTTTTCCGGCCCTAATTGTCAACCACACATTGTATTTCAGCTAGACGGAAAAATCATAGCACCGACAGGTGCGGGAGCTTGGGGTTCAGGCCTCCTACAATGGCTTGAGTTCACAAAGCTTCAAAGACTTACAATCAGAGGTAAAGGAGTGATTGATGGACAAGGTGCAGTGTGGTGGAATGACTCTCCCACATACAATCCTACAGATGAAACAGCAGACAACAGTACAGAAGATTCGCAGACCGTAGACAGTTACAATGGAAAAATGCCAAGCACAAAACCAACAGCGCTTAGGTTCTATGGAAGCAATGGTGTGACAGTCACTGGCATAACAATTCAAAACAGCCCTCAAGCTCACCTCAAGTTTGACTCCTGCACAAATGTACAAGTGTCTGCCGTAACGATTTCATCCCCCGGCGACAGCCCCAACACCGATGGAATCCACCTTCAGAACTCCCAGGACGTGGCCATTTCTGGCGCAAGCCTTGCTTGTGGAGATGATTGCATATCAATACAAACCGGTTGTTCAAACGTATTCATACACAATGTAAACTGTGGACCTGGACATGGAGTCAGTATTGGAGGGCTAGGAAAGGATGGCACCAAAGCTTGTGTGTCAAACATCACCGTCCGAGATGTTAAACTGCAAAATACACTCAACGGAGTCAGAATAAAGACCTGGCAGGGAGGATCAGGGTCAGTGAAAAATGTCATGTTTGCAAACATTCAAGTCTCAGAAGTTGAATTCCCTATAATGATTGATCAATTCTACTGCGACAAGGGGCATTGCGCAAACAAAACCTCAGCTGTGGCCGTTTCGGGTATAAACTATGTAAACATTCAAGGAACCTACACATCGAAACCTGCACATTTTGCATGCAGTGACAGCATACCATGTACTGGTGTATCCCTAGACACCATACACCTAAAATCAGTTCAATCAGGGAAGCGCTTGTATGACCCTTTCTGCTGGGAGGCGTATGGAGAACTCAAGACGAACACTGTCCCACCGATTGATTGTTTGATGAAAGGAAAGCCGTCTTCAAGCAGCAGCTCAATCCAGTCTGAAGGTGGTGGCTATTCCTGCTAA

Protein Analysis

500

Amino Acids

53.2

Weight (kDa)

8.06

Isoelectric Point (pI)

37.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pect-lyase_RHGA_epim PF12708 89 - 136 2.8e-06 Rhamnogalacturonase A/epimerase, pectate lyase-like
Glyco_hydro_28 PF00295 118 - 300 5.8e-28 Glycosyl hydrolases family 28
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1201
Acc36I ACCTGC 1 cut(s) 1282
AccB1I GGYRCC 2 cut(s) 257, 1010
AccB7I CCANNNNNTGG 2 cut(s) 874, 1310
AccI GTMKAC 2 cut(s) 264, 657
AciI CCGC 3 cut(s) 158, 341, 482
AclWI GGATC 1 cut(s) 1108
AcoI YGGCCR 2 cut(s) 876, 1221
AcsI RAATTY 1 cut(s) 1154
AcuI CTGAAG 4 cut(s) 159, 252, 842, 1497
AdeI CACNNNGTG 1 cut(s) 187
AfaI GTAC 3 cut(s) 637, 795, 1309
AfeI AGCGCT 2 cut(s) 699, 1361
AfiI CCNNNNNNNGG 3 cut(s) 874, 977, 1310
AgeI ACCGGT 1 cut(s) 929
AgsI TTSAA 9 cut(s) 13, 533, 749, 939, 1139, 1154, 1253, 1349, 1455
AhdI GACNNNNNGTC 1 cut(s) 980
AjiI CACGTC 1 cut(s) 874
AjnI CCWGG 4 cut(s) 24, 867, 970, 1088
AluBI AGCT 9 cut(s) 69, 89, 451, 488, 529, 764, 1019, 1217, 1464
AluI AGCT 9 cut(s) 69, 89, 451, 488, 529, 764, 1019, 1217, 1464
Alw26I GTCTC 2 cut(s) 71, 1147
AlwI GGATC 1 cut(s) 1108
AlwNI CAGNNNCTG 1 cut(s) 734
Aor51HI AGCGCT 2 cut(s) 699, 1361
AoxI GGCC 5 cut(s) 178, 418, 499, 876, 1221
ApeKI GCWGC 6 cut(s) 21, 242, 329, 338, 1458, 1461
ApoI RAATTY 1 cut(s) 1154
AsiGI ACCGGT 1 cut(s) 929
AspLEI GCGC 5 cut(s) 247, 700, 890, 1202, 1362
AspS9I GGNCC 2 cut(s) 419, 968
AsuC2I CCSGG 1 cut(s) 825
AsuHPI GGTGA 4 cut(s) 161, 305, 758, 1027
AvaII GGWCC 1 cut(s) 968
BaeI ACNNNNGTAYC 4 cut(s) 219, 252, 1299, 1332
BalI TGGCCA 1 cut(s) 878
BanI GGYRCC 2 cut(s) 257, 1010
BbsI GAAGAC 2 cut(s) 54, 1443
BbvCI CCTCAGC 1 cut(s) 1213
BbvI GCAGC 6 cut(s) 33, 254, 341, 350, 1470, 1473
BccI CCATC 5 cut(s) 290, 385, 560, 839, 1001
BceAI ACGGC 4 cut(s) 245, 791, 1208, 1432
BciT130I CCWGG 4 cut(s) 26, 869, 972, 1090
BciVI GTATCC 1 cut(s) 1327
BclI TGATCA 1 cut(s) 1171
BcnI CCSGG 1 cut(s) 825
BcoDI GTCTC 2 cut(s) 71, 1147
BfaI CTAG 4 cut(s) 90, 452, 998, 1322
BfmI CTRYAG 1 cut(s) 612
BfoI RGCGCY 2 cut(s) 701, 1363
BfuAI ACCTGC 1 cut(s) 1282
BfuI GTATCC 1 cut(s) 1327
BisI GCNGC 7 cut(s) 22, 243, 330, 339, 342, 1459, 1462
BlsI GCNGC 7 cut(s) 23, 244, 331, 340, 343, 1460, 1463
Bme1390I CCNGG 5 cut(s) 26, 825, 869, 972, 1090
Bme18I GGWCC 1 cut(s) 968
BmeRI GACNNNNNGTC 1 cut(s) 980
BmgBI CACGTC 1 cut(s) 874
BmgT120I GGNCC 2 cut(s) 419, 968
BmiI GGNNCC 3 cut(s) 259, 1012, 1258
BmrFI CCNGG 5 cut(s) 26, 825, 869, 972, 1090
BmsI GCATC 3 cut(s) 112, 169, 368
BpiI GAAGAC 2 cut(s) 54, 1443
Bpu10I CCTNAGC 2 cut(s) 701, 1213
BpuEI CTTGAG 4 cut(s) 536, 744, 755, 1385
BpuMI CCSGG 1 cut(s) 825
BsaJI CCNNGG 3 cut(s) 124, 823, 867
BsaWI WCCGGW 1 cut(s) 929
Bsc4I CCNNNNNNNGG 3 cut(s) 874, 977, 1310
Bse118I RCCGGY 1 cut(s) 929
Bse1I ACTGG 3 cut(s) 739, 1315, 1471
Bse3DI GCAATG 3 cut(s) 42, 724, 1195
BseBI CCWGG 4 cut(s) 26, 869, 972, 1090
BseDI CCNNGG 3 cut(s) 124, 823, 867
BseGI GGATG 2 cut(s) 818, 1012
BseLI CCNNNNNNNGG 3 cut(s) 874, 977, 1310
BseMI GCAATG 3 cut(s) 42, 724, 1195
BseMII CTCAG 2 cut(s) 1158, 1227
BseNI ACTGG 3 cut(s) 739, 1315, 1471
BseXI GCAGC 6 cut(s) 33, 254, 341, 350, 1470, 1473
BseYI CCCAGC 1 cut(s) 1380
BsgI GTGCAG 4 cut(s) 261, 597, 769, 1260
BshFI GGCC 5 cut(s) 180, 420, 501, 878, 1223
BshNI GGYRCC 2 cut(s) 257, 1010
BshTI ACCGGT 1 cut(s) 929
BsiSI CCGG 3 cut(s) 417, 825, 930
BslFI GGGAC 2 cut(s) 142, 1400
BslI CCNNNNNNNGG 3 cut(s) 874, 977, 1310
BsmAI GTCTC 2 cut(s) 71, 1147
BsmFI GGGAC 2 cut(s) 142, 1400
BsnI GGCC 5 cut(s) 180, 420, 501, 878, 1223
Bsp1407I TGTACA 1 cut(s) 793
Bsp143I GATC 2 cut(s) 1100, 1171
BspACI CCGC 3 cut(s) 158, 341, 482
BspANI GGCC 5 cut(s) 180, 420, 501, 878, 1223
BspCNI CTCAG 2 cut(s) 1157, 1226
BspLI GGNNCC 3 cut(s) 259, 1012, 1258
BspMI ACCTGC 1 cut(s) 1282
BspPI GGATC 1 cut(s) 1108
BspT107I GGYRCC 2 cut(s) 257, 1010
BsrDI GCAATG 3 cut(s) 42, 724, 1195
BsrFI RCCGGY 1 cut(s) 929
BsrGI TGTACA 1 cut(s) 793
BsrI ACTGG 3 cut(s) 739, 1315, 1471
BssAI RCCGGY 1 cut(s) 929
BssECI CCNNGG 3 cut(s) 124, 823, 867
BssMI GATC 2 cut(s) 1100, 1171
Bst2UI CCWGG 4 cut(s) 26, 869, 972, 1090
Bst4CI ACNGT 9 cut(s) 367, 373, 635, 655, 662, 730, 965, 1039, 1414
Bst6I CTCTTC 1 cut(s) 245
BstAPI GCANNNNNTGC 2 cut(s) 896, 1283
BstAUI TGTACA 1 cut(s) 793
BstC8I GCNNGC 5 cut(s) 101, 346, 357, 892, 1288
BstDEI CTNAG 5 cut(s) 17, 315, 701, 1144, 1213
BstF5I GGATG 2 cut(s) 818, 1012
BstH2I RGCGCY 2 cut(s) 701, 1363
BstHHI GCGC 5 cut(s) 247, 700, 890, 1202, 1362
BstKTI GATC 2 cut(s) 1103, 1174
BstMAI GTCTC 2 cut(s) 71, 1147
BstMBI GATC 2 cut(s) 1100, 1171
BstMWI GCNNNNNNNGC 7 cut(s) 326, 335, 338, 896, 1283, 1296, 1494
BstNI CCWGG 4 cut(s) 26, 869, 972, 1090
BstNSI RCATGY 1 cut(s) 1290
BstSCI CCNGG 5 cut(s) 24, 823, 867, 970, 1088
BstSFI CTRYAG 1 cut(s) 612
BstV1I GCAGC 6 cut(s) 33, 254, 341, 350, 1470, 1473
BstV2I GAAGAC 2 cut(s) 54, 1443
BsuI GTATCC 1 cut(s) 1327
BsuRI GGCC 5 cut(s) 180, 420, 501, 878, 1223
BtrI CACGTC 1 cut(s) 874
BtsCI GGATG 2 cut(s) 818, 1012
BtsI GCAGTG 2 cut(s) 585, 1297
BtsIMutI CAGTG 5 cut(s) 585, 732, 1116, 1297, 1410
BveI ACCTGC 1 cut(s) 1282
Cac8I GCNNGC 5 cut(s) 101, 346, 357, 892, 1288
CaiI CAGNNNCTG 1 cut(s) 734
CfoI GCGC 5 cut(s) 247, 700, 890, 1202, 1362
Cfr10I RCCGGY 1 cut(s) 929
Cfr13I GGNCC 2 cut(s) 419, 968
Csp6I GTAC 3 cut(s) 636, 794, 1308
CspAI ACCGGT 1 cut(s) 929
CviAII CATG 5 cut(s) 30, 977, 1123, 1287, 1305
CviQI GTAC 3 cut(s) 636, 794, 1308
DdeI CTNAG 5 cut(s) 17, 315, 701, 1144, 1213
DpnI GATC 2 cut(s) 1102, 1173
DpnII GATC 2 cut(s) 1100, 1171
DraIII CACNNNGTG 1 cut(s) 187
DriI GACNNNNNGTC 1 cut(s) 980
EaeI YGGCCR 2 cut(s) 876, 1221
Eam1104I CTCTTC 1 cut(s) 245
Eam1105I GACNNNNNGTC 1 cut(s) 980
EarI CTCTTC 1 cut(s) 245
Eco147I AGGCCT 1 cut(s) 501
Eco47I GGWCC 1 cut(s) 968
Eco47III AGCGCT 2 cut(s) 699, 1361
Eco57I CTGAAG 4 cut(s) 159, 252, 842, 1497
EcoRI GAATTC 1 cut(s) 1154
EcoRII CCWGG 4 cut(s) 24, 867, 970, 1088
FaeI CATG 5 cut(s) 33, 980, 1126, 1290, 1308
FalI AAGNNNNNCTT 2 cut(s) 883, 915
FaqI GGGAC 2 cut(s) 142, 1400
FatI CATG 5 cut(s) 29, 976, 1122, 1286, 1304
FauI CCCGC 1 cut(s) 475
FbaI TGATCA 1 cut(s) 1171
FblI GTMKAC 2 cut(s) 264, 657
Fnu4HI GCNGC 7 cut(s) 22, 243, 330, 339, 342, 1459, 1462
FokI GGATG 2 cut(s) 805, 1019
Fsp4HI GCNGC 7 cut(s) 22, 243, 330, 339, 342, 1459, 1462
FspBI CTAG 4 cut(s) 90, 452, 998, 1322
FspI TGCGCA 1 cut(s) 1201
GlaI GCGC 5 cut(s) 246, 699, 889, 1201, 1361
GluI GCNGC 7 cut(s) 22, 243, 330, 339, 342, 1459, 1462
GsaI CCCAGC 1 cut(s) 1384
HaeII RGCGCY 2 cut(s) 701, 1363
HaeIII GGCC 5 cut(s) 180, 420, 501, 878, 1223
HapII CCGG 3 cut(s) 417, 825, 930
HhaI GCGC 5 cut(s) 247, 700, 890, 1202, 1362
Hin1II CATG 5 cut(s) 33, 980, 1126, 1290, 1308
Hin6I GCGC 5 cut(s) 245, 698, 888, 1200, 1360
HinP1I GCGC 5 cut(s) 245, 698, 888, 1200, 1360
HincII GTYRAC 1 cut(s) 431
HindII GTYRAC 1 cut(s) 431
HindIII AAGCTT 2 cut(s) 527, 1017
HinfI GANTC 6 cut(s) 593, 644, 779, 849, 981, 1074
HpaII CCGG 3 cut(s) 417, 825, 930
HphI GGTGA 4 cut(s) 161, 305, 758, 1027
Hpy166II GTNNAC 7 cut(s) 265, 431, 522, 658, 961, 968, 1246
Hpy188I TCNGA 6 cut(s) 548, 861, 1043, 1079, 1147, 1477
Hpy188III TCNNGA 1 cut(s) 1402
Hpy8I GTNNAC 7 cut(s) 265, 431, 522, 658, 961, 968, 1246
HpyAV CCTTC 3 cut(s) 183, 866, 1472
HpyCH4III ACNGT 9 cut(s) 367, 373, 635, 655, 662, 730, 965, 1039, 1414
HpyCH4IV ACGT 2 cut(s) 873, 942
HpyF10VI GCNNNNNNNGC 7 cut(s) 326, 335, 338, 896, 1283, 1296, 1494
HpyF3I CTNAG 5 cut(s) 17, 315, 701, 1144, 1213
HpySE526I ACGT 2 cut(s) 873, 942
Hsp92II CATG 5 cut(s) 33, 980, 1126, 1290, 1308
HspAI GCGC 5 cut(s) 245, 698, 888, 1200, 1360
Ksp22I TGATCA 1 cut(s) 1171
Kzo9I GATC 2 cut(s) 1100, 1171
LmnI GCTCC 1 cut(s) 485
Lsp1109I GCAGC 6 cut(s) 33, 254, 341, 350, 1470, 1473
LweI GCATC 3 cut(s) 112, 169, 368
MaeI CTAG 4 cut(s) 90, 452, 998, 1322
MaeII ACGT 2 cut(s) 873, 942
MaeIII GTNAC 8 cut(s) 140, 203, 367, 662, 724, 730, 808, 1292
MalI GATC 2 cut(s) 1102, 1173
MboI GATC 2 cut(s) 1100, 1171
MboII GAAGA 5 cut(s) 54, 236, 262, 653, 1443
MlsI TGGCCA 1 cut(s) 878
MluCI AATT 5 cut(s) 208, 424, 744, 1154, 1175
MluNI TGGCCA 1 cut(s) 878
MlyI GAGTC 4 cut(s) 587, 773, 990, 1083
MmeI TCCRAC 1 cut(s) 54
Mox20I TGGCCA 1 cut(s) 878
MscI TGGCCA 1 cut(s) 878
MseI TTAA 1 cut(s) 1050
Msp20I TGGCCA 1 cut(s) 878
MspA1I CMGCKG 2 cut(s) 341, 1217
MspI CCGG 3 cut(s) 417, 825, 930
MspR9I CCNGG 5 cut(s) 26, 825, 869, 972, 1090
MvaI CCWGG 4 cut(s) 26, 869, 972, 1090
MwoI GCNNNNNNNGC 7 cut(s) 326, 335, 338, 896, 1283, 1296, 1494
NciI CCSGG 1 cut(s) 825
NdeII GATC 2 cut(s) 1100, 1171
NlaIII CATG 5 cut(s) 33, 980, 1126, 1290, 1308
NlaIV GGNNCC 3 cut(s) 259, 1012, 1258
NmuCI GTSAC 4 cut(s) 203, 724, 730, 1292
NsbI TGCGCA 1 cut(s) 1201
NspI RCATGY 1 cut(s) 1290
PaeI GCATGC 1 cut(s) 1290
PceI AGGCCT 1 cut(s) 501
PfeI GAWTC 2 cut(s) 644, 849
PflMI CCANNNNNTGG 2 cut(s) 874, 1310
PinAI ACCGGT 1 cut(s) 929
PkrI GCNGC 7 cut(s) 23, 244, 331, 340, 343, 1460, 1463
PleI GAGTC 4 cut(s) 587, 773, 989, 1082
PpsI GAGTC 4 cut(s) 587, 773, 989, 1082
Psp6I CCWGG 4 cut(s) 24, 867, 970, 1088
PspFI CCCAGC 1 cut(s) 1380
PspGI CCWGG 4 cut(s) 24, 867, 970, 1088
PspN4I GGNNCC 3 cut(s) 259, 1012, 1258
PspPI GGNCC 2 cut(s) 419, 968
PstNI CAGNNNCTG 1 cut(s) 734
PvuII CAGCTG 1 cut(s) 1217
RsaI GTAC 3 cut(s) 637, 795, 1309
RsaNI GTAC 3 cut(s) 636, 794, 1308
SaqAI TTAA 1 cut(s) 1050
SatI GCNGC 7 cut(s) 22, 243, 330, 339, 342, 1459, 1462
Sau3AI GATC 2 cut(s) 1100, 1171
Sau96I GGNCC 2 cut(s) 419, 968
SchI GAGTC 4 cut(s) 587, 773, 990, 1083
ScrFI CCNGG 5 cut(s) 26, 825, 869, 972, 1090
SfaNI GCATC 3 cut(s) 112, 169, 368
SfcI CTRYAG 1 cut(s) 612
SinI GGWCC 1 cut(s) 968
SmlI CTYRAG 4 cut(s) 515, 759, 770, 1400
SmoI CTYRAG 4 cut(s) 515, 759, 770, 1400
SphI GCATGC 1 cut(s) 1290
Sse9I AATT 5 cut(s) 208, 424, 744, 1154, 1175
SseBI AGGCCT 1 cut(s) 501
SsiI CCGC 3 cut(s) 158, 341, 482
SspMI CTAG 4 cut(s) 90, 452, 998, 1322
StuI AGGCCT 1 cut(s) 501
StyD4I CCNGG 5 cut(s) 24, 823, 867, 970, 1088
TaaI ACNGT 9 cut(s) 367, 373, 635, 655, 662, 730, 965, 1039, 1414
TaiI ACGT 2 cut(s) 876, 945
TaqI TCGA 2 cut(s) 65, 1268
TasI AATT 5 cut(s) 208, 424, 744, 1154, 1175
TatI WGTACW 3 cut(s) 635, 793, 1307
TauI GCSGC 1 cut(s) 344
TfiI GAWTC 2 cut(s) 644, 849
Tru1I TTAA 1 cut(s) 1050
Tru9I TTAA 1 cut(s) 1050
TscAI CASTG 5 cut(s) 585, 739, 1116, 1297, 1417
TseFI GTSAC 4 cut(s) 203, 724, 730, 1292
TseI GCWGC 6 cut(s) 21, 242, 329, 338, 1458, 1461
Tsp45I GTSAC 4 cut(s) 203, 724, 730, 1292
TspDTI ATGAA 4 cut(s) 633, 807, 937, 1451
TspGWI ACGGA 2 cut(s) 471, 1086
TspRI CASTG 5 cut(s) 585, 739, 1116, 1297, 1417
Van91I CCANNNNNTGG 2 cut(s) 874, 1310
VpaK11BI GGWCC 1 cut(s) 968
XapI RAATTY 1 cut(s) 1154
XceI RCATGY 1 cut(s) 1290
XcmI CCANNNNNNNNNTGG 1 cut(s) 1478
XmiI GTMKAC 2 cut(s) 264, 657
XspI CTAG 4 cut(s) 90, 452, 998, 1322
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.