Polygalacturonase
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G14650 AT5G14650 |
| fragaria_vesca | FvH4_6g50960 FvH4_6g50960 FvH4_6g50960 FvH4_6g50960 FvH4_6g50960 |
| malus_domestica | MD09G1030100.v1.1 MD09G1030200.v1.1 MD17G1032000.v1.1 |
| prunus_persica | Prupe.3G287200_v2.0.a1 |
| pyrus_communis | pycom111g02420 |
| rosa_chinensis | RchiOBHm_Chr2g0172361 |
| rosa_laevigata | RLG00000022107 |
| rosa_multiflora | Rmu_sc0000467.1_g000009 |
| rosa_roxburghii | Rroxscaffold_2G00079950 |
| rosa_rugosa | Rorug02G0558800 |
| rosa_samantha | Rh2AG633800 Rh2BG647600 Rh2CG614600 Rh2DG662400 |
| rosa_wichuraiana | Rw2G052500 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 902 |
| AccBSI | CCGCTC | 1 cut(s) | 156 |
| AccIII | TCCGGA | 1 cut(s) | 1391 |
| AciI | CCGC | 9 cut(s) | 154, 197, 219, 222, 302, 528, 810, 1140, 1148 |
| AclWI | GGATC | 1 cut(s) | 1033 |
| AcsI | RAATTY | 1 cut(s) | 491 |
| AfaI | GTAC | 2 cut(s) | 1292, 1316 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 766, 902, 1235 |
| AflIII | ACRYGT | 2 cut(s) | 234, 1188 |
| AgeI | ACCGGT | 1 cut(s) | 1235 |
| AgsI | TTSAA | 5 cut(s) | 491, 977, 1079, 1264, 1360 |
| AjiI | CACGTC | 1 cut(s) | 1191 |
| AjnI | CCWGG | 3 cut(s) | 720, 748, 895 |
| AleI | CACNNNNGTG | 1 cut(s) | 1238 |
| AluBI | AGCT | 6 cut(s) | 317, 443, 453, 944, 1137, 1224 |
| AluI | AGCT | 6 cut(s) | 317, 443, 453, 944, 1137, 1224 |
| Alw21I | GWGCWC | 4 cut(s) | 1139, 1235, 1326, 1379 |
| Alw26I | GTCTC | 3 cut(s) | 614, 963, 1248 |
| Alw44I | GTGCAC | 1 cut(s) | 1231 |
| AlwI | GGATC | 1 cut(s) | 1033 |
| Ama87I | CYCGRG | 1 cut(s) | 923 |
| Aor13HI | TCCGGA | 1 cut(s) | 1391 |
| AoxI | GGCC | 1 cut(s) | 391 |
| ApaLI | GTGCAC | 1 cut(s) | 1231 |
| ApeKI | GCWGC | 4 cut(s) | 109, 311, 314, 525 |
| ApoI | RAATTY | 1 cut(s) | 491 |
| AsiGI | ACCGGT | 1 cut(s) | 1235 |
| AspLEI | GCGC | 1 cut(s) | 691 |
| AspS9I | GGNCC | 3 cut(s) | 392, 893, 1036 |
| AsuC2I | CCSGG | 1 cut(s) | 355 |
| AsuHPI | GGTGA | 3 cut(s) | 155, 211, 278 |
| AsuII | TTCGAA | 2 cut(s) | 230, 953 |
| AvaI | CYCGRG | 1 cut(s) | 923 |
| AvaII | GGWCC | 2 cut(s) | 893, 1036 |
| AxyI | CCTNAGG | 1 cut(s) | 684 |
| BaeGI | GKGCMC | 1 cut(s) | 1235 |
| BanII | GRGCYC | 2 cut(s) | 924, 1139 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1274, 1306 |
| BbsI | GAAGAC | 1 cut(s) | 174 |
| Bbv12I | GWGCWC | 4 cut(s) | 1139, 1235, 1326, 1379 |
| BbvI | GCAGC | 4 cut(s) | 121, 323, 326, 537 |
| BccI | CCATC | 6 cut(s) | 263, 358, 422, 533, 638, 764 |
| BciT130I | CCWGG | 3 cut(s) | 722, 750, 897 |
| BciVI | GTATCC | 1 cut(s) | 1243 |
| BclI | TGATCA | 1 cut(s) | 145 |
| BcnI | CCSGG | 1 cut(s) | 355 |
| BcoDI | GTCTC | 3 cut(s) | 614, 963, 1248 |
| BfuI | GTATCC | 1 cut(s) | 1243 |
| BisI | GCNGC | 8 cut(s) | 110, 154, 220, 303, 312, 315, 526, 529 |
| BlsI | GCNGC | 8 cut(s) | 111, 155, 221, 304, 313, 316, 527, 530 |
| Bme1390I | CCNGG | 4 cut(s) | 355, 722, 750, 897 |
| Bme18I | GGWCC | 2 cut(s) | 893, 1036 |
| BmeT110I | CYCGRG | 1 cut(s) | 923 |
| BmgBI | CACGTC | 1 cut(s) | 1191 |
| BmgT120I | GGNCC | 3 cut(s) | 392, 893, 1036 |
| BmiI | GGNNCC | 1 cut(s) | 1183 |
| BmrFI | CCNGG | 4 cut(s) | 355, 722, 750, 897 |
| BmsI | GCATC | 2 cut(s) | 341, 848 |
| BpiI | GAAGAC | 1 cut(s) | 174 |
| BpmI | CTGGAG | 2 cut(s) | 136, 1017 |
| Bpu10I | CCTNAGC | 1 cut(s) | 454 |
| Bpu14I | TTCGAA | 2 cut(s) | 230, 953 |
| BpuEI | CTTGAG | 1 cut(s) | 680 |
| BpuMI | CCSGG | 1 cut(s) | 355 |
| BsaAI | YACGTR | 1 cut(s) | 1168 |
| BsaBI | GATNNNNATC | 1 cut(s) | 515 |
| BsaJI | CCNNGG | 2 cut(s) | 288, 748 |
| BsaWI | WCCGGW | 3 cut(s) | 184, 1235, 1391 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 766, 902, 1235 |
| Bse118I | RCCGGY | 1 cut(s) | 1235 |
| Bse1I | ACTGG | 5 cut(s) | 119, 664, 816, 1000, 1099 |
| Bse21I | CCTNAGG | 1 cut(s) | 684 |
| Bse3DI | GCAATG | 1 cut(s) | 42 |
| Bse8I | GATNNNNATC | 1 cut(s) | 515 |
| BseAI | TCCGGA | 1 cut(s) | 1391 |
| BseBI | CCWGG | 3 cut(s) | 722, 750, 897 |
| BseDI | CCNNGG | 2 cut(s) | 288, 748 |
| BseGI | GGATG | 5 cut(s) | 350, 743, 775, 863, 1059 |
| BseJI | GATNNNNATC | 1 cut(s) | 515 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 766, 902, 1235 |
| BseMI | GCAATG | 1 cut(s) | 42 |
| BseMII | CTCAG | 2 cut(s) | 468, 698 |
| BseNI | ACTGG | 5 cut(s) | 119, 664, 816, 1000, 1099 |
| BseSI | GKGCMC | 1 cut(s) | 1235 |
| BseXI | GCAGC | 4 cut(s) | 121, 323, 326, 537 |
| BsgI | GTGCAG | 2 cut(s) | 347, 694 |
| BshFI | GGCC | 1 cut(s) | 393 |
| BshTI | ACCGGT | 1 cut(s) | 1235 |
| BsiHKAI | GWGCWC | 4 cut(s) | 1139, 1235, 1326, 1379 |
| BsiHKCI | CYCGRG | 1 cut(s) | 923 |
| BsiSI | CCGG | 5 cut(s) | 185, 354, 390, 1236, 1392 |
| BsiWI | CGTACG | 1 cut(s) | 1314 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 766, 902, 1235 |
| BsmAI | GTCTC | 3 cut(s) | 614, 963, 1248 |
| BsmBI | CGTCTC | 1 cut(s) | 963 |
| BsmI | GAATGC | 1 cut(s) | 293 |
| BsnI | GGCC | 1 cut(s) | 393 |
| BsoBI | CYCGRG | 1 cut(s) | 923 |
| Bsp119I | TTCGAA | 2 cut(s) | 230, 953 |
| Bsp1286I | GDGCHC | 5 cut(s) | 924, 1139, 1235, 1326, 1379 |
| Bsp13I | TCCGGA | 1 cut(s) | 1391 |
| Bsp143I | GATC | 3 cut(s) | 145, 516, 1025 |
| BspACI | CCGC | 9 cut(s) | 154, 197, 219, 222, 302, 528, 810, 1140, 1148 |
| BspANI | GGCC | 1 cut(s) | 393 |
| BspCNI | CTCAG | 2 cut(s) | 467, 697 |
| BspEI | TCCGGA | 1 cut(s) | 1391 |
| BspHI | TCATGA | 1 cut(s) | 1089 |
| BspLI | GGNNCC | 1 cut(s) | 1183 |
| BspPI | GGATC | 1 cut(s) | 1033 |
| BspT104I | TTCGAA | 2 cut(s) | 230, 953 |
| BsrBI | CCGCTC | 1 cut(s) | 156 |
| BsrDI | GCAATG | 1 cut(s) | 42 |
| BsrFI | RCCGGY | 1 cut(s) | 1235 |
| BsrI | ACTGG | 5 cut(s) | 119, 664, 816, 1000, 1099 |
| BssAI | RCCGGY | 1 cut(s) | 1235 |
| BssECI | CCNNGG | 2 cut(s) | 288, 748 |
| BssMI | GATC | 3 cut(s) | 145, 516, 1025 |
| BssT1I | CCWWGG | 1 cut(s) | 288 |
| Bst2UI | CCWGG | 3 cut(s) | 722, 750, 897 |
| Bst4CI | ACNGT | 5 cut(s) | 81, 173, 839, 964, 1339 |
| BstBAI | YACGTR | 1 cut(s) | 1168 |
| BstBI | TTCGAA | 2 cut(s) | 230, 953 |
| BstC8I | GCNNGC | 3 cut(s) | 319, 330, 1213 |
| BstDEI | CTNAG | 3 cut(s) | 454, 626, 684 |
| BstF5I | GGATG | 5 cut(s) | 350, 743, 775, 863, 1059 |
| BstHHI | GCGC | 1 cut(s) | 691 |
| BstKTI | GATC | 3 cut(s) | 148, 519, 1028 |
| BstMAI | GTCTC | 3 cut(s) | 614, 963, 1248 |
| BstMBI | GATC | 3 cut(s) | 145, 516, 1025 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 299, 308, 311, 399, 1221, 1230 |
| BstNI | CCWGG | 3 cut(s) | 722, 750, 897 |
| BstNSI | RCATGY | 1 cut(s) | 1215 |
| BstSCI | CCNGG | 4 cut(s) | 353, 720, 748, 895 |
| BstSLI | GKGCMC | 1 cut(s) | 1235 |
| BstSNI | TACGTA | 1 cut(s) | 1168 |
| BstV1I | GCAGC | 4 cut(s) | 121, 323, 326, 537 |
| BstV2I | GAAGAC | 1 cut(s) | 174 |
| Bsu36I | CCTNAGG | 1 cut(s) | 684 |
| BsuI | GTATCC | 1 cut(s) | 1243 |
| BsuRI | GGCC | 1 cut(s) | 393 |
| BtgZI | GCGATG | 2 cut(s) | 134, 657 |
| BtrI | CACGTC | 1 cut(s) | 1191 |
| BtsCI | GGATG | 5 cut(s) | 350, 743, 775, 863, 1059 |
| BtsI | GCAGTG | 1 cut(s) | 1222 |
| BtsIMutI | CAGTG | 5 cut(s) | 112, 657, 960, 993, 1222 |
| Cac8I | GCNNGC | 3 cut(s) | 319, 330, 1213 |
| CciI | TCATGA | 1 cut(s) | 1089 |
| CfoI | GCGC | 1 cut(s) | 691 |
| Cfr10I | RCCGGY | 1 cut(s) | 1235 |
| Cfr13I | GGNCC | 3 cut(s) | 392, 893, 1036 |
| CsiI | ACCWGGT | 1 cut(s) | 895 |
| Csp6I | GTAC | 2 cut(s) | 1291, 1315 |
| CspAI | ACCGGT | 1 cut(s) | 1235 |
| CviAII | CATG | 4 cut(s) | 902, 1014, 1090, 1212 |
| CviQI | GTAC | 2 cut(s) | 1291, 1315 |
| DdeI | CTNAG | 3 cut(s) | 454, 626, 684 |
| DpnI | GATC | 3 cut(s) | 147, 518, 1027 |
| DpnII | GATC | 3 cut(s) | 145, 516, 1025 |
| EciI | GGCGGA | 1 cut(s) | 799 |
| Ecl136II | GAGCTC | 1 cut(s) | 1137 |
| Eco105I | TACGTA | 1 cut(s) | 1168 |
| Eco130I | CCWWGG | 1 cut(s) | 288 |
| Eco24I | GRGCYC | 2 cut(s) | 924, 1139 |
| Eco47I | GGWCC | 2 cut(s) | 893, 1036 |
| Eco53kI | GAGCTC | 1 cut(s) | 1137 |
| Eco81I | CCTNAGG | 1 cut(s) | 684 |
| Eco88I | CYCGRG | 1 cut(s) | 923 |
| EcoICRI | GAGCTC | 1 cut(s) | 1137 |
| EcoRI | GAATTC | 1 cut(s) | 491 |
| EcoRII | CCWGG | 3 cut(s) | 720, 748, 895 |
| EcoT14I | CCWWGG | 1 cut(s) | 288 |
| EcoT38I | GRGCYC | 2 cut(s) | 924, 1139 |
| ErhI | CCWWGG | 1 cut(s) | 288 |
| Esp3I | CGTCTC | 1 cut(s) | 963 |
| FaeI | CATG | 4 cut(s) | 905, 1017, 1093, 1215 |
| FatI | CATG | 4 cut(s) | 901, 1013, 1089, 1211 |
| FauI | CCCGC | 1 cut(s) | 215 |
| FbaI | TGATCA | 1 cut(s) | 145 |
| Fnu4HI | GCNGC | 8 cut(s) | 110, 154, 220, 303, 312, 315, 526, 529 |
| FokI | GGATG | 5 cut(s) | 337, 730, 782, 870, 1046 |
| FriOI | GRGCYC | 2 cut(s) | 924, 1139 |
| Fsp4HI | GCNGC | 8 cut(s) | 110, 154, 220, 303, 312, 315, 526, 529 |
| GlaI | GCGC | 1 cut(s) | 690 |
| GluI | GCNGC | 8 cut(s) | 110, 154, 220, 303, 312, 315, 526, 529 |
| GsuI | CTGGAG | 2 cut(s) | 136, 1017 |
| HaeIII | GGCC | 1 cut(s) | 393 |
| HapII | CCGG | 5 cut(s) | 185, 354, 390, 1236, 1392 |
| HhaI | GCGC | 1 cut(s) | 691 |
| Hin1II | CATG | 4 cut(s) | 905, 1017, 1093, 1215 |
| Hin6I | GCGC | 1 cut(s) | 689 |
| HinP1I | GCGC | 1 cut(s) | 689 |
| HindIII | AAGCTT | 1 cut(s) | 942 |
| HinfI | GANTC | 6 cut(s) | 566, 593, 774, 906, 999, 1403 |
| HpaII | CCGG | 5 cut(s) | 185, 354, 390, 1236, 1392 |
| HphI | GGTGA | 3 cut(s) | 155, 211, 278 |
| Hpy166II | GTNNAC | 4 cut(s) | 871, 893, 1171, 1233 |
| Hpy188I | TCNGA | 4 cut(s) | 730, 968, 1004, 1134 |
| Hpy188III | TCNNGA | 6 cut(s) | 74, 611, 925, 1090, 1247, 1392 |
| Hpy8I | GTNNAC | 4 cut(s) | 871, 893, 1171, 1233 |
| Hpy99I | CGWCG | 2 cut(s) | 617, 707 |
| HpyAV | CCTTC | 3 cut(s) | 922, 1271, 1357 |
| HpyCH4III | ACNGT | 5 cut(s) | 81, 173, 839, 964, 1339 |
| HpyCH4IV | ACGT | 9 cut(s) | 8, 234, 599, 867, 882, 957, 972, 1167, 1190 |
| HpyCH4V | TGCA | 8 cut(s) | 321, 328, 587, 711, 982, 1204, 1215, 1233 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 299, 308, 311, 399, 1221, 1230 |
| HpyF3I | CTNAG | 3 cut(s) | 454, 626, 684 |
| HpySE526I | ACGT | 9 cut(s) | 8, 234, 599, 867, 882, 957, 972, 1167, 1190 |
| Hsp92II | CATG | 4 cut(s) | 905, 1017, 1093, 1215 |
| HspAI | GCGC | 1 cut(s) | 689 |
| Kpn2I | TCCGGA | 1 cut(s) | 1391 |
| Ksp22I | TGATCA | 1 cut(s) | 145 |
| Kzo9I | GATC | 3 cut(s) | 145, 516, 1025 |
| LmnI | GCTCC | 2 cut(s) | 448, 1142 |
| Lsp1109I | GCAGC | 4 cut(s) | 121, 323, 326, 537 |
| LweI | GCATC | 2 cut(s) | 341, 848 |
| MabI | ACCWGGT | 1 cut(s) | 895 |
| MaeII | ACGT | 9 cut(s) | 8, 234, 599, 867, 882, 957, 972, 1167, 1190 |
| MaeIII | GTNAC | 5 cut(s) | 173, 199, 655, 958, 1217 |
| MalI | GATC | 3 cut(s) | 147, 518, 1027 |
| MbiI | CCGCTC | 1 cut(s) | 156 |
| MboI | GATC | 3 cut(s) | 145, 516, 1025 |
| MboII | GAAGA | 4 cut(s) | 133, 179, 200, 1372 |
| MhlI | GDGCHC | 5 cut(s) | 924, 1139, 1235, 1326, 1379 |
| MluCI | AATT | 5 cut(s) | 397, 491, 534, 886, 1162 |
| MlyI | GAGTC | 3 cut(s) | 560, 915, 1008 |
| MmeI | TCCRAC | 3 cut(s) | 228, 470, 1087 |
| MroI | TCCGGA | 1 cut(s) | 1391 |
| MseI | TTAA | 2 cut(s) | 12, 240 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1238 |
| MspA1I | CMGCKG | 3 cut(s) | 219, 528, 1142 |
| MspI | CCGG | 5 cut(s) | 185, 354, 390, 1236, 1392 |
| MspR9I | CCNGG | 4 cut(s) | 355, 722, 750, 897 |
| Mva1269I | GAATGC | 1 cut(s) | 293 |
| MvaI | CCWGG | 3 cut(s) | 722, 750, 897 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 299, 308, 311, 399, 1221, 1230 |
| NciI | CCSGG | 1 cut(s) | 355 |
| NdeII | GATC | 3 cut(s) | 145, 516, 1025 |
| NlaIII | CATG | 4 cut(s) | 905, 1017, 1093, 1215 |
| NlaIV | GGNNCC | 1 cut(s) | 1183 |
| NmeAIII | GCCGAG | 1 cut(s) | 1398 |
| NmuCI | GTSAC | 4 cut(s) | 199, 655, 958, 1217 |
| NspI | RCATGY | 1 cut(s) | 1215 |
| NspV | TTCGAA | 2 cut(s) | 230, 953 |
| OliI | CACNNNNGTG | 1 cut(s) | 1238 |
| PaeI | GCATGC | 1 cut(s) | 1215 |
| PagI | TCATGA | 1 cut(s) | 1089 |
| PctI | GAATGC | 1 cut(s) | 293 |
| PfeI | GAWTC | 3 cut(s) | 593, 774, 1403 |
| Pfl23II | CGTACG | 1 cut(s) | 1314 |
| PflFI | GACNNNGTC | 1 cut(s) | 897 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 902 |
| PinAI | ACCGGT | 1 cut(s) | 1235 |
| PkrI | GCNGC | 8 cut(s) | 111, 155, 221, 304, 313, 316, 527, 530 |
| PleI | GAGTC | 3 cut(s) | 560, 914, 1007 |
| PpsI | GAGTC | 3 cut(s) | 560, 914, 1007 |
| Ppu21I | YACGTR | 1 cut(s) | 1168 |
| Psp124BI | GAGCTC | 1 cut(s) | 1139 |
| Psp6I | CCWGG | 3 cut(s) | 720, 748, 895 |
| PspGI | CCWGG | 3 cut(s) | 720, 748, 895 |
| PspLI | CGTACG | 1 cut(s) | 1314 |
| PspN4I | GGNNCC | 1 cut(s) | 1183 |
| PspPI | GGNCC | 3 cut(s) | 392, 893, 1036 |
| PsyI | GACNNNGTC | 1 cut(s) | 897 |
| RsaI | GTAC | 2 cut(s) | 1292, 1316 |
| RsaNI | GTAC | 2 cut(s) | 1291, 1315 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1238 |
| SacI | GAGCTC | 1 cut(s) | 1139 |
| SaqAI | TTAA | 2 cut(s) | 12, 240 |
| SatI | GCNGC | 8 cut(s) | 110, 154, 220, 303, 312, 315, 526, 529 |
| Sau3AI | GATC | 3 cut(s) | 145, 516, 1025 |
| Sau96I | GGNCC | 3 cut(s) | 392, 893, 1036 |
| SchI | GAGTC | 3 cut(s) | 560, 915, 1008 |
| ScrFI | CCNGG | 4 cut(s) | 355, 722, 750, 897 |
| SduI | GDGCHC | 5 cut(s) | 924, 1139, 1235, 1326, 1379 |
| SexAI | ACCWGGT | 1 cut(s) | 895 |
| SfaNI | GCATC | 2 cut(s) | 341, 848 |
| SfuI | TTCGAA | 2 cut(s) | 230, 953 |
| SgrAI | CRCCGGYG | 1 cut(s) | 1235 |
| SinI | GGWCC | 2 cut(s) | 893, 1036 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1238 |
| SmlI | CTYRAG | 1 cut(s) | 695 |
| SmoI | CTYRAG | 1 cut(s) | 695 |
| SnaBI | TACGTA | 1 cut(s) | 1168 |
| SphI | GCATGC | 1 cut(s) | 1215 |
| Sse9I | AATT | 5 cut(s) | 397, 491, 534, 886, 1162 |
| SsiI | CCGC | 9 cut(s) | 154, 197, 219, 222, 302, 528, 810, 1140, 1148 |
| SstI | GAGCTC | 1 cut(s) | 1139 |
| StyD4I | CCNGG | 4 cut(s) | 353, 720, 748, 895 |
| StyI | CCWWGG | 1 cut(s) | 288 |
| TaaI | ACNGT | 5 cut(s) | 81, 173, 839, 964, 1339 |
| TaiI | ACGT | 9 cut(s) | 11, 237, 602, 870, 885, 960, 975, 1170, 1193 |
| TaqII | GACCGA | 1 cut(s) | 1024 |
| TasI | AATT | 5 cut(s) | 397, 491, 534, 886, 1162 |
| TauI | GCSGC | 4 cut(s) | 156, 222, 305, 531 |
| TfiI | GAWTC | 3 cut(s) | 593, 774, 1403 |
| Tru1I | TTAA | 2 cut(s) | 12, 240 |
| Tru9I | TTAA | 2 cut(s) | 12, 240 |
| TscAI | CASTG | 5 cut(s) | 119, 664, 967, 1000, 1222 |
| TseFI | GTSAC | 4 cut(s) | 199, 655, 958, 1217 |
| TseI | GCWGC | 4 cut(s) | 109, 311, 314, 525 |
| Tsp45I | GTSAC | 4 cut(s) | 199, 655, 958, 1217 |
| TspDTI | ATGAA | 2 cut(s) | 732, 1290 |
| TspGWI | ACGGA | 3 cut(s) | 782, 1218, 1332 |
| TspRI | CASTG | 5 cut(s) | 119, 664, 967, 1000, 1222 |
| Tth111I | GACNNNGTC | 1 cut(s) | 897 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 902 |
| VneI | GTGCAC | 1 cut(s) | 1231 |
| VpaK11BI | GGWCC | 2 cut(s) | 893, 1036 |
| XapI | RAATTY | 1 cut(s) | 491 |
| XceI | RCATGY | 1 cut(s) | 1215 |