MD17G1032000.v1.1

Polygalacturonase

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
Physical Location & Seq
Forward (+)
2327986 .. 2330273
2288 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1032000.v1.1.491

Sequence Viewer

Length: 1416 bp
ATGAGGACGTTTAACCTAAAAACCCTCTCGTTCTTTGTTCTCATTGCGTTTTTTATCTCGTTTTCGAGTTTTCTCGAACCGTGTTATGCTCGAAAAGGAGGCAATAAGCAGCACTGGAGGAAGAAACAAAAGGGTTATGGTGGTGATCATCGCCGCTCTGCGAGGGAAGACAGTTACATCACACCGGAAGAAACTGCGGTGACACTTGGAGAAAACAGCGGCGGGGTTTCGAACGTGTTTAATGTGTTGGACTATGGTGCTAAAGGTGATGGAAAAGCCGATGACACCAAGGCATTCGAGGCGGCGTGGGCAGCAGCTTGCAAAGTGCAGGCATCAACTATGAGTGTTCCATCCGGGTCTGTGTTCCTTGTCAAACCAATCTCTTTCTCCGGCCCTAATTGCGAAGCAAATATCGTGTTTCAGTTAGATGGTAAAATCATAGCTCCAACAAGCTCAGGGGATTGGGGTTCAGGTCTTTTACAATGGATTGAATTCACAAAACTAAAAGGGATTTCGATCAAAGGCAGCGGCGTAATTGATGGACAAGGCTCGGTTTGGTGGAATGACTCGCCGAAATACAATCCTGCAAAAGAATCAACGTATAGCAGTCTCGACGATTTGGCTCTTAGGTTCTATGGAAGCGATGGCGTTAGTGTCACTGGCATAACACTCCAAAACAGCCCTCAGGCGCACCTCAAGTTCGACGACTGCACAAATGTCCAGGTTTCCGATATAAGTATTTCATCCCCTGGAAACAGCCCCAATACGGATGGAATCCACCTCCAAAACTCCCAAAATGCTGTCATTTCCGCCACCAGTATCGCTTGTGGAGATGACTGTATATCAATACAAACAGGATGCTCGAACGTAAACATACACAACGTAAATTGTGGACCAGGTCATGGAGTCAGCATTGGAGGGCTCGGGAAGGACAACACGAAAGCTTGTGTTTCGAACGTCACTGTCCGAGACGTTCAAATGCACAACACACTCACTGGAGTCAGAATAAAGACATGGCAGGGAGGATCGGGGTCGGTCCAAAACATAATGTTCTCAAACATCCAACTAACAGAAGTTGAAACCCCAATCATGATTGACCAGTTCTACTGCGACAAGAGTAAATGCCAAAATCAGAGCTCCGCTGTGGCGGTTTCGGGTGTGAATTACGTAAACATACAAGGAACCTACACGTCCAAGCCCGTGCATTTCGCATGCAGTGACAGCTCTCCGTGCACCGGTGTGTCTCTGGATACCATAGAGTTGAAATCAGTTGATGAAGGGAAGCAGTTGTACGACCCTTTCTGTTGGGAGGCGTACGGAGTGCTCAAAACAAGCACAGTTCCTCAAATCGACTGCTTGAAGAAGGGGAAGCCGAGCACAATAACTCAATCCGGAAGTAGTGATTCGTCTTGCTGA

Protein Analysis

472

Amino Acids

50.37

Weight (kDa)

6.08

Isoelectric Point (pI)

43.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pect-lyase_RHGA_epim PF12708 80 - 127 5.2e-06 Rhamnogalacturonase A/epimerase, pectate lyase-like
Glyco_hydro_28 PF00295 109 - 424 2.5e-84 Glycosyl hydrolases family 28
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 902
AccBSI CCGCTC 1 cut(s) 156
AccIII TCCGGA 1 cut(s) 1391
AciI CCGC 9 cut(s) 154, 197, 219, 222, 302, 528, 810, 1140, 1148
AclWI GGATC 1 cut(s) 1033
AcsI RAATTY 1 cut(s) 491
AfaI GTAC 2 cut(s) 1292, 1316
AfiI CCNNNNNNNGG 3 cut(s) 766, 902, 1235
AflIII ACRYGT 2 cut(s) 234, 1188
AgeI ACCGGT 1 cut(s) 1235
AgsI TTSAA 5 cut(s) 491, 977, 1079, 1264, 1360
AjiI CACGTC 1 cut(s) 1191
AjnI CCWGG 3 cut(s) 720, 748, 895
AleI CACNNNNGTG 1 cut(s) 1238
AluBI AGCT 6 cut(s) 317, 443, 453, 944, 1137, 1224
AluI AGCT 6 cut(s) 317, 443, 453, 944, 1137, 1224
Alw21I GWGCWC 4 cut(s) 1139, 1235, 1326, 1379
Alw26I GTCTC 3 cut(s) 614, 963, 1248
Alw44I GTGCAC 1 cut(s) 1231
AlwI GGATC 1 cut(s) 1033
Ama87I CYCGRG 1 cut(s) 923
Aor13HI TCCGGA 1 cut(s) 1391
AoxI GGCC 1 cut(s) 391
ApaLI GTGCAC 1 cut(s) 1231
ApeKI GCWGC 4 cut(s) 109, 311, 314, 525
ApoI RAATTY 1 cut(s) 491
AsiGI ACCGGT 1 cut(s) 1235
AspLEI GCGC 1 cut(s) 691
AspS9I GGNCC 3 cut(s) 392, 893, 1036
AsuC2I CCSGG 1 cut(s) 355
AsuHPI GGTGA 3 cut(s) 155, 211, 278
AsuII TTCGAA 2 cut(s) 230, 953
AvaI CYCGRG 1 cut(s) 923
AvaII GGWCC 2 cut(s) 893, 1036
AxyI CCTNAGG 1 cut(s) 684
BaeGI GKGCMC 1 cut(s) 1235
BanII GRGCYC 2 cut(s) 924, 1139
BarI GAAGNNNNNNTAC 2 cut(s) 1274, 1306
BbsI GAAGAC 1 cut(s) 174
Bbv12I GWGCWC 4 cut(s) 1139, 1235, 1326, 1379
BbvI GCAGC 4 cut(s) 121, 323, 326, 537
BccI CCATC 6 cut(s) 263, 358, 422, 533, 638, 764
BciT130I CCWGG 3 cut(s) 722, 750, 897
BciVI GTATCC 1 cut(s) 1243
BclI TGATCA 1 cut(s) 145
BcnI CCSGG 1 cut(s) 355
BcoDI GTCTC 3 cut(s) 614, 963, 1248
BfuI GTATCC 1 cut(s) 1243
BisI GCNGC 8 cut(s) 110, 154, 220, 303, 312, 315, 526, 529
BlsI GCNGC 8 cut(s) 111, 155, 221, 304, 313, 316, 527, 530
Bme1390I CCNGG 4 cut(s) 355, 722, 750, 897
Bme18I GGWCC 2 cut(s) 893, 1036
BmeT110I CYCGRG 1 cut(s) 923
BmgBI CACGTC 1 cut(s) 1191
BmgT120I GGNCC 3 cut(s) 392, 893, 1036
BmiI GGNNCC 1 cut(s) 1183
BmrFI CCNGG 4 cut(s) 355, 722, 750, 897
BmsI GCATC 2 cut(s) 341, 848
BpiI GAAGAC 1 cut(s) 174
BpmI CTGGAG 2 cut(s) 136, 1017
Bpu10I CCTNAGC 1 cut(s) 454
Bpu14I TTCGAA 2 cut(s) 230, 953
BpuEI CTTGAG 1 cut(s) 680
BpuMI CCSGG 1 cut(s) 355
BsaAI YACGTR 1 cut(s) 1168
BsaBI GATNNNNATC 1 cut(s) 515
BsaJI CCNNGG 2 cut(s) 288, 748
BsaWI WCCGGW 3 cut(s) 184, 1235, 1391
Bsc4I CCNNNNNNNGG 3 cut(s) 766, 902, 1235
Bse118I RCCGGY 1 cut(s) 1235
Bse1I ACTGG 5 cut(s) 119, 664, 816, 1000, 1099
Bse21I CCTNAGG 1 cut(s) 684
Bse3DI GCAATG 1 cut(s) 42
Bse8I GATNNNNATC 1 cut(s) 515
BseAI TCCGGA 1 cut(s) 1391
BseBI CCWGG 3 cut(s) 722, 750, 897
BseDI CCNNGG 2 cut(s) 288, 748
BseGI GGATG 5 cut(s) 350, 743, 775, 863, 1059
BseJI GATNNNNATC 1 cut(s) 515
BseLI CCNNNNNNNGG 3 cut(s) 766, 902, 1235
BseMI GCAATG 1 cut(s) 42
BseMII CTCAG 2 cut(s) 468, 698
BseNI ACTGG 5 cut(s) 119, 664, 816, 1000, 1099
BseSI GKGCMC 1 cut(s) 1235
BseXI GCAGC 4 cut(s) 121, 323, 326, 537
BsgI GTGCAG 2 cut(s) 347, 694
BshFI GGCC 1 cut(s) 393
BshTI ACCGGT 1 cut(s) 1235
BsiHKAI GWGCWC 4 cut(s) 1139, 1235, 1326, 1379
BsiHKCI CYCGRG 1 cut(s) 923
BsiSI CCGG 5 cut(s) 185, 354, 390, 1236, 1392
BsiWI CGTACG 1 cut(s) 1314
BslI CCNNNNNNNGG 3 cut(s) 766, 902, 1235
BsmAI GTCTC 3 cut(s) 614, 963, 1248
BsmBI CGTCTC 1 cut(s) 963
BsmI GAATGC 1 cut(s) 293
BsnI GGCC 1 cut(s) 393
BsoBI CYCGRG 1 cut(s) 923
Bsp119I TTCGAA 2 cut(s) 230, 953
Bsp1286I GDGCHC 5 cut(s) 924, 1139, 1235, 1326, 1379
Bsp13I TCCGGA 1 cut(s) 1391
Bsp143I GATC 3 cut(s) 145, 516, 1025
BspACI CCGC 9 cut(s) 154, 197, 219, 222, 302, 528, 810, 1140, 1148
BspANI GGCC 1 cut(s) 393
BspCNI CTCAG 2 cut(s) 467, 697
BspEI TCCGGA 1 cut(s) 1391
BspHI TCATGA 1 cut(s) 1089
BspLI GGNNCC 1 cut(s) 1183
BspPI GGATC 1 cut(s) 1033
BspT104I TTCGAA 2 cut(s) 230, 953
BsrBI CCGCTC 1 cut(s) 156
BsrDI GCAATG 1 cut(s) 42
BsrFI RCCGGY 1 cut(s) 1235
BsrI ACTGG 5 cut(s) 119, 664, 816, 1000, 1099
BssAI RCCGGY 1 cut(s) 1235
BssECI CCNNGG 2 cut(s) 288, 748
BssMI GATC 3 cut(s) 145, 516, 1025
BssT1I CCWWGG 1 cut(s) 288
Bst2UI CCWGG 3 cut(s) 722, 750, 897
Bst4CI ACNGT 5 cut(s) 81, 173, 839, 964, 1339
BstBAI YACGTR 1 cut(s) 1168
BstBI TTCGAA 2 cut(s) 230, 953
BstC8I GCNNGC 3 cut(s) 319, 330, 1213
BstDEI CTNAG 3 cut(s) 454, 626, 684
BstF5I GGATG 5 cut(s) 350, 743, 775, 863, 1059
BstHHI GCGC 1 cut(s) 691
BstKTI GATC 3 cut(s) 148, 519, 1028
BstMAI GTCTC 3 cut(s) 614, 963, 1248
BstMBI GATC 3 cut(s) 145, 516, 1025
BstMWI GCNNNNNNNGC 6 cut(s) 299, 308, 311, 399, 1221, 1230
BstNI CCWGG 3 cut(s) 722, 750, 897
BstNSI RCATGY 1 cut(s) 1215
BstSCI CCNGG 4 cut(s) 353, 720, 748, 895
BstSLI GKGCMC 1 cut(s) 1235
BstSNI TACGTA 1 cut(s) 1168
BstV1I GCAGC 4 cut(s) 121, 323, 326, 537
BstV2I GAAGAC 1 cut(s) 174
Bsu36I CCTNAGG 1 cut(s) 684
BsuI GTATCC 1 cut(s) 1243
BsuRI GGCC 1 cut(s) 393
BtgZI GCGATG 2 cut(s) 134, 657
BtrI CACGTC 1 cut(s) 1191
BtsCI GGATG 5 cut(s) 350, 743, 775, 863, 1059
BtsI GCAGTG 1 cut(s) 1222
BtsIMutI CAGTG 5 cut(s) 112, 657, 960, 993, 1222
Cac8I GCNNGC 3 cut(s) 319, 330, 1213
CciI TCATGA 1 cut(s) 1089
CfoI GCGC 1 cut(s) 691
Cfr10I RCCGGY 1 cut(s) 1235
Cfr13I GGNCC 3 cut(s) 392, 893, 1036
CsiI ACCWGGT 1 cut(s) 895
Csp6I GTAC 2 cut(s) 1291, 1315
CspAI ACCGGT 1 cut(s) 1235
CviAII CATG 4 cut(s) 902, 1014, 1090, 1212
CviQI GTAC 2 cut(s) 1291, 1315
DdeI CTNAG 3 cut(s) 454, 626, 684
DpnI GATC 3 cut(s) 147, 518, 1027
DpnII GATC 3 cut(s) 145, 516, 1025
EciI GGCGGA 1 cut(s) 799
Ecl136II GAGCTC 1 cut(s) 1137
Eco105I TACGTA 1 cut(s) 1168
Eco130I CCWWGG 1 cut(s) 288
Eco24I GRGCYC 2 cut(s) 924, 1139
Eco47I GGWCC 2 cut(s) 893, 1036
Eco53kI GAGCTC 1 cut(s) 1137
Eco81I CCTNAGG 1 cut(s) 684
Eco88I CYCGRG 1 cut(s) 923
EcoICRI GAGCTC 1 cut(s) 1137
EcoRI GAATTC 1 cut(s) 491
EcoRII CCWGG 3 cut(s) 720, 748, 895
EcoT14I CCWWGG 1 cut(s) 288
EcoT38I GRGCYC 2 cut(s) 924, 1139
ErhI CCWWGG 1 cut(s) 288
Esp3I CGTCTC 1 cut(s) 963
FaeI CATG 4 cut(s) 905, 1017, 1093, 1215
FatI CATG 4 cut(s) 901, 1013, 1089, 1211
FauI CCCGC 1 cut(s) 215
FbaI TGATCA 1 cut(s) 145
Fnu4HI GCNGC 8 cut(s) 110, 154, 220, 303, 312, 315, 526, 529
FokI GGATG 5 cut(s) 337, 730, 782, 870, 1046
FriOI GRGCYC 2 cut(s) 924, 1139
Fsp4HI GCNGC 8 cut(s) 110, 154, 220, 303, 312, 315, 526, 529
GlaI GCGC 1 cut(s) 690
GluI GCNGC 8 cut(s) 110, 154, 220, 303, 312, 315, 526, 529
GsuI CTGGAG 2 cut(s) 136, 1017
HaeIII GGCC 1 cut(s) 393
HapII CCGG 5 cut(s) 185, 354, 390, 1236, 1392
HhaI GCGC 1 cut(s) 691
Hin1II CATG 4 cut(s) 905, 1017, 1093, 1215
Hin6I GCGC 1 cut(s) 689
HinP1I GCGC 1 cut(s) 689
HindIII AAGCTT 1 cut(s) 942
HinfI GANTC 6 cut(s) 566, 593, 774, 906, 999, 1403
HpaII CCGG 5 cut(s) 185, 354, 390, 1236, 1392
HphI GGTGA 3 cut(s) 155, 211, 278
Hpy166II GTNNAC 4 cut(s) 871, 893, 1171, 1233
Hpy188I TCNGA 4 cut(s) 730, 968, 1004, 1134
Hpy188III TCNNGA 6 cut(s) 74, 611, 925, 1090, 1247, 1392
Hpy8I GTNNAC 4 cut(s) 871, 893, 1171, 1233
Hpy99I CGWCG 2 cut(s) 617, 707
HpyAV CCTTC 3 cut(s) 922, 1271, 1357
HpyCH4III ACNGT 5 cut(s) 81, 173, 839, 964, 1339
HpyCH4IV ACGT 9 cut(s) 8, 234, 599, 867, 882, 957, 972, 1167, 1190
HpyCH4V TGCA 8 cut(s) 321, 328, 587, 711, 982, 1204, 1215, 1233
HpyF10VI GCNNNNNNNGC 6 cut(s) 299, 308, 311, 399, 1221, 1230
HpyF3I CTNAG 3 cut(s) 454, 626, 684
HpySE526I ACGT 9 cut(s) 8, 234, 599, 867, 882, 957, 972, 1167, 1190
Hsp92II CATG 4 cut(s) 905, 1017, 1093, 1215
HspAI GCGC 1 cut(s) 689
Kpn2I TCCGGA 1 cut(s) 1391
Ksp22I TGATCA 1 cut(s) 145
Kzo9I GATC 3 cut(s) 145, 516, 1025
LmnI GCTCC 2 cut(s) 448, 1142
Lsp1109I GCAGC 4 cut(s) 121, 323, 326, 537
LweI GCATC 2 cut(s) 341, 848
MabI ACCWGGT 1 cut(s) 895
MaeII ACGT 9 cut(s) 8, 234, 599, 867, 882, 957, 972, 1167, 1190
MaeIII GTNAC 5 cut(s) 173, 199, 655, 958, 1217
MalI GATC 3 cut(s) 147, 518, 1027
MbiI CCGCTC 1 cut(s) 156
MboI GATC 3 cut(s) 145, 516, 1025
MboII GAAGA 4 cut(s) 133, 179, 200, 1372
MhlI GDGCHC 5 cut(s) 924, 1139, 1235, 1326, 1379
MluCI AATT 5 cut(s) 397, 491, 534, 886, 1162
MlyI GAGTC 3 cut(s) 560, 915, 1008
MmeI TCCRAC 3 cut(s) 228, 470, 1087
MroI TCCGGA 1 cut(s) 1391
MseI TTAA 2 cut(s) 12, 240
MslI CAYNNNNRTG 1 cut(s) 1238
MspA1I CMGCKG 3 cut(s) 219, 528, 1142
MspI CCGG 5 cut(s) 185, 354, 390, 1236, 1392
MspR9I CCNGG 4 cut(s) 355, 722, 750, 897
Mva1269I GAATGC 1 cut(s) 293
MvaI CCWGG 3 cut(s) 722, 750, 897
MwoI GCNNNNNNNGC 6 cut(s) 299, 308, 311, 399, 1221, 1230
NciI CCSGG 1 cut(s) 355
NdeII GATC 3 cut(s) 145, 516, 1025
NlaIII CATG 4 cut(s) 905, 1017, 1093, 1215
NlaIV GGNNCC 1 cut(s) 1183
NmeAIII GCCGAG 1 cut(s) 1398
NmuCI GTSAC 4 cut(s) 199, 655, 958, 1217
NspI RCATGY 1 cut(s) 1215
NspV TTCGAA 2 cut(s) 230, 953
OliI CACNNNNGTG 1 cut(s) 1238
PaeI GCATGC 1 cut(s) 1215
PagI TCATGA 1 cut(s) 1089
PctI GAATGC 1 cut(s) 293
PfeI GAWTC 3 cut(s) 593, 774, 1403
Pfl23II CGTACG 1 cut(s) 1314
PflFI GACNNNGTC 1 cut(s) 897
PflMI CCANNNNNTGG 1 cut(s) 902
PinAI ACCGGT 1 cut(s) 1235
PkrI GCNGC 8 cut(s) 111, 155, 221, 304, 313, 316, 527, 530
PleI GAGTC 3 cut(s) 560, 914, 1007
PpsI GAGTC 3 cut(s) 560, 914, 1007
Ppu21I YACGTR 1 cut(s) 1168
Psp124BI GAGCTC 1 cut(s) 1139
Psp6I CCWGG 3 cut(s) 720, 748, 895
PspGI CCWGG 3 cut(s) 720, 748, 895
PspLI CGTACG 1 cut(s) 1314
PspN4I GGNNCC 1 cut(s) 1183
PspPI GGNCC 3 cut(s) 392, 893, 1036
PsyI GACNNNGTC 1 cut(s) 897
RsaI GTAC 2 cut(s) 1292, 1316
RsaNI GTAC 2 cut(s) 1291, 1315
RseI CAYNNNNRTG 1 cut(s) 1238
SacI GAGCTC 1 cut(s) 1139
SaqAI TTAA 2 cut(s) 12, 240
SatI GCNGC 8 cut(s) 110, 154, 220, 303, 312, 315, 526, 529
Sau3AI GATC 3 cut(s) 145, 516, 1025
Sau96I GGNCC 3 cut(s) 392, 893, 1036
SchI GAGTC 3 cut(s) 560, 915, 1008
ScrFI CCNGG 4 cut(s) 355, 722, 750, 897
SduI GDGCHC 5 cut(s) 924, 1139, 1235, 1326, 1379
SexAI ACCWGGT 1 cut(s) 895
SfaNI GCATC 2 cut(s) 341, 848
SfuI TTCGAA 2 cut(s) 230, 953
SgrAI CRCCGGYG 1 cut(s) 1235
SinI GGWCC 2 cut(s) 893, 1036
SmiMI CAYNNNNRTG 1 cut(s) 1238
SmlI CTYRAG 1 cut(s) 695
SmoI CTYRAG 1 cut(s) 695
SnaBI TACGTA 1 cut(s) 1168
SphI GCATGC 1 cut(s) 1215
Sse9I AATT 5 cut(s) 397, 491, 534, 886, 1162
SsiI CCGC 9 cut(s) 154, 197, 219, 222, 302, 528, 810, 1140, 1148
SstI GAGCTC 1 cut(s) 1139
StyD4I CCNGG 4 cut(s) 353, 720, 748, 895
StyI CCWWGG 1 cut(s) 288
TaaI ACNGT 5 cut(s) 81, 173, 839, 964, 1339
TaiI ACGT 9 cut(s) 11, 237, 602, 870, 885, 960, 975, 1170, 1193
TaqII GACCGA 1 cut(s) 1024
TasI AATT 5 cut(s) 397, 491, 534, 886, 1162
TauI GCSGC 4 cut(s) 156, 222, 305, 531
TfiI GAWTC 3 cut(s) 593, 774, 1403
Tru1I TTAA 2 cut(s) 12, 240
Tru9I TTAA 2 cut(s) 12, 240
TscAI CASTG 5 cut(s) 119, 664, 967, 1000, 1222
TseFI GTSAC 4 cut(s) 199, 655, 958, 1217
TseI GCWGC 4 cut(s) 109, 311, 314, 525
Tsp45I GTSAC 4 cut(s) 199, 655, 958, 1217
TspDTI ATGAA 2 cut(s) 732, 1290
TspGWI ACGGA 3 cut(s) 782, 1218, 1332
TspRI CASTG 5 cut(s) 119, 664, 967, 1000, 1222
Tth111I GACNNNGTC 1 cut(s) 897
Van91I CCANNNNNTGG 1 cut(s) 902
VneI GTGCAC 1 cut(s) 1231
VpaK11BI GGWCC 2 cut(s) 893, 1036
XapI RAATTY 1 cut(s) 491
XceI RCATGY 1 cut(s) 1215
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.