Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0009157

Physical Location & Seq

Genomic Coordinates Reverse (-)

80426151 .. 80428486

Gene Structure 2336 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G052500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1350 bp

ATGGAGGAAAAACCGAGGGGTGAAAAGGGATTATGGCGGTCATCATCAACATCATCACCCTTCAGGCCACACCTGTCGGCTTTGAAAAGTGACAATTACATCACACCAGAAGATATTGCTGTGAGTGCAGCACAGAAGAATAGTGCCGTCTACAATGTGTTGGACTACGGTGCTAAAGGAGATGGAAAGGCAGATGACACAAAGGCATTTGCAGCAGCATGGGCAGCAGCGTGCAAAGTGCAAGCATCAACCGTAACTGTTCCATCTGGGTCTGTATTCCTTGTCAAACCTATCTCTTTCTCCGGCCCTAATTGTCAAACAGACATTGTATTTCAGTTAGATGGAAAAATCATAGCCCCGACAGGCGCGGGAGCGTGGGGTTCAGGCCTTCTACAATGGCTTGAGTTCACAAAGCTTCAAAGACTTGCCATCAGAGGTAAAGGTGTGATTGATGGACAAGGTGCAGTTTGGTGGAATGACTCGCCCACATACGATCCTACAGATGAAACAGCAGACAACAGTACAGAAGATTCGACCGTAGACAGTTACAGTGGAAAAATGCCAAGCACAAAACCAACAGCGCTTAGGTTCTATGGAAGCAACGGTGTGACAGTCACTGGCATAACAATTCAAAACAGCCCTCAAACCCACCTCAAGTTTGACTCCTGCACTAATGTACAAGTTTCTGCCGTAACTATTTCATCCCCCGGCAACAGCCCCAACACTGATGGAATCCACCTTCAAAACTCCCAGGATGTGGTCATTTCCGGCGCAAGCCTTGCTTGTGGAGATGATTGTATATCAATACAAACTGGCTGCTCAAACGTATTCATACACAATGTAAACTGTGGACCTGGACATGGAGTCAGCATTGGAGGGCTAGGAAAGGATGGCACCAAAGCTTGTGTGTCAAACATCACCGTCCGAGATGTTAAAATGCAAAATACACTGAACGGAGTCAGAATAAAGACCTGGCAGGGAGGATCAGGGTCAGTAAGAAATGTCATGTTCGCAAACATTCAAGTTTCAGAAGTCGAGTTCCCTATCATGATTGATCAATACTACTGTGACAAGGGTTCGGGTATAAACTACGTAAACATTCAAGGAACCTATACATCAAAACCTGCACATTTTGCATGCAGTGACAGCATACCATGTACTGGTGTATCCCTAGACACCATAGACCTAAAATCGGTTCAATCAGGGAGGCACTTGTATGACCCTTTCTGTTGGGAGGCATATGGAGACCTCAAGACAAACACTGTCCCCCCAATTGATTGCTTGATGAAAGGAAAGCCATCTTCAAGCAGCAGCACAGTCCAGTCTCAAGGTGGTGGCTATTCTTGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004650 GO:0005575 GO:0005618 GO:0005623 GO:0008150 GO:0009664 GO:0009825 GO:0009827 GO:0009831 GO:0009987 GO:0016043 GO:0016049 GO:0016787 GO:0016798 GO:0030312 GO:0040007 GO:0042545 GO:0042547 GO:0044464 GO:0045229 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00040 ko01100 map00040 map01100

Pfam Domains

Protein Families

Glyco_hydro_28

Protein Analysis

449

Amino Acids

47.53

Weight (kDa)

5.82

Isoelectric Point (pI)

38.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pect-lyase_RHGA_epim	PF12708	51 - 98	1.5e-06	Rhamnogalacturonase A/epimerase, pectate lyase-like
Glyco_hydro_28	PF00295	80 - 398	2.6e-71	Glycosyl hydrolases family 28

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009157)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G14650 AT5G14650
fragaria_vesca	FvH4_6g50960 FvH4_6g50960 FvH4_6g50960 FvH4_6g50960 FvH4_6g50960
malus_domestica	MD09G1030100.v1.1 MD09G1030200.v1.1 MD17G1032000.v1.1
prunus_persica	Prupe.3G287200_v2.0.a1
pyrus_communis	pycom111g02420
rosa_chinensis	RchiOBHm_Chr2g0172361
rosa_laevigata	RLG00000022107
rosa_multiflora	Rmu_sc0000467.1_g000009
rosa_roxburghii	Rroxscaffold_2G00079950
rosa_rugosa	Rorug02G0558800
rosa_samantha	Rh2AG633800 Rh2BG647600 Rh2CG614600 Rh2DG662400
rosa_wichuraiana	Rw2G052500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1132
AccB1I	GGYRCC	1 cut(s)	893
AccB7I	CCANNNNNTGG	2 cut(s)	757, 1160
AccI	GTMKAC	2 cut(s)	150, 540
AccII	CGCG	1 cut(s)	368
AciI	CCGC	2 cut(s)	37, 368
AclWI	GGATC	2 cut(s)	488, 991
AcuI	CTGAAG	1 cut(s)	46
AfaI	GTAC	3 cut(s)	523, 678, 1159
AfeI	AGCGCT	1 cut(s)	582
AfiI	CCNNNNNNNGG	4 cut(s)	757, 860, 1160, 1192
AgsI	TTSAA	8 cut(s)	85, 419, 632, 743, 1022, 1103, 1199, 1305
AhdI	GACNNNNNGTC	1 cut(s)	863
AjnI	CCWGG	3 cut(s)	750, 853, 971
AluBI	AGCT	2 cut(s)	415, 902
AluI	AGCT	2 cut(s)	415, 902
Alw26I	GTCTC	2 cut(s)	1239, 1329
AlwI	GGATC	2 cut(s)	488, 991
AlwNI	CAGNNNCTG	1 cut(s)	617
Aor51HI	AGCGCT	1 cut(s)	582
AoxI	GGCC	3 cut(s)	65, 304, 385
ApeKI	GCWGC	8 cut(s)	128, 212, 215, 224, 227, 816, 1308, 1311
AspLEI	GCGC	3 cut(s)	368, 583, 773
AspS9I	GGNCC	2 cut(s)	305, 851
AsuC2I	CCSGG	1 cut(s)	708
AsuHPI	GGTGA	3 cut(s)	32, 48, 910
AvaII	GGWCC	1 cut(s)	851
BaeI	ACNNNNGTAYC	2 cut(s)	1149, 1182
BanI	GGYRCC	1 cut(s)	893
BbvI	GCAGC	8 cut(s)	140, 224, 227, 236, 239, 803, 1320, 1323
BccI	CCATC	8 cut(s)	176, 271, 335, 437, 446, 722, 884, 1306
BceAI	ACGGC	2 cut(s)	131, 674
BciT130I	CCWGG	3 cut(s)	752, 855, 973
BciVI	GTATCC	1 cut(s)	1177
BclI	TGATCA	1 cut(s)	1054
BcnI	CCSGG	1 cut(s)	708
BcoDI	GTCTC	2 cut(s)	1239, 1329
BfaI	CTAG	2 cut(s)	881, 1172
BfmI	CTRYAG	1 cut(s)	498
BfoI	RGCGCY	1 cut(s)	584
BfuAI	ACCTGC	1 cut(s)	1132
BfuI	GTATCC	1 cut(s)	1177
BisI	GCNGC	8 cut(s)	129, 213, 216, 225, 228, 817, 1309, 1312
BlsI	GCNGC	8 cut(s)	130, 214, 217, 226, 229, 818, 1310, 1313
Bme1390I	CCNGG	4 cut(s)	708, 752, 855, 973
Bme18I	GGWCC	1 cut(s)	851
BmeRI	GACNNNNNGTC	1 cut(s)	863
BmgT120I	GGNCC	2 cut(s)	305, 851
BmiI	GGNNCC	2 cut(s)	895, 1108
BmrFI	CCNGG	4 cut(s)	708, 752, 855, 973
BmsI	GCATC	1 cut(s)	254
Bpu10I	CCTNAGC	1 cut(s)	584
BpuEI	CTTGAG	4 cut(s)	422, 638, 1235, 1311
BpuMI	CCSGG	1 cut(s)	708
BsaAI	YACGTR	1 cut(s)	1093
BsaI	GGTCTC	1 cut(s)	1239
BsaJI	CCNNGG	3 cut(s)	14, 706, 750
Bsc4I	CCNNNNNNNGG	4 cut(s)	757, 860, 1160, 1192
Bse1I	ACTGG	4 cut(s)	622, 817, 1165, 1321
BseBI	CCWGG	3 cut(s)	752, 855, 973
BseDI	CCNNGG	3 cut(s)	14, 706, 750
BseGI	GGATG	3 cut(s)	701, 760, 895
BseLI	CCNNNNNNNGG	4 cut(s)	757, 860, 1160, 1192
BseNI	ACTGG	4 cut(s)	622, 817, 1165, 1321
BseXI	GCAGC	8 cut(s)	140, 224, 227, 236, 239, 803, 1320, 1323
BsgI	GTGCAG	4 cut(s)	147, 483, 652, 1110
Bsh1236I	CGCG	1 cut(s)	368
Bsh1285I	CGRYCG	1 cut(s)	537
BshFI	GGCC	3 cut(s)	67, 306, 387
BshNI	GGYRCC	1 cut(s)	893
BsiEI	CGRYCG	1 cut(s)	537
BsiSI	CCGG	3 cut(s)	303, 708, 768
BslFI	GGGAC	1 cut(s)	1250
BslI	CCNNNNNNNGG	4 cut(s)	757, 860, 1160, 1192
BsmAI	GTCTC	2 cut(s)	1239, 1329
BsmFI	GGGAC	1 cut(s)	1250
BsnI	GGCC	3 cut(s)	67, 306, 387
Bso31I	GGTCTC	1 cut(s)	1239
Bsp1407I	TGTACA	1 cut(s)	676
Bsp143I	GATC	3 cut(s)	493, 983, 1054
BspACI	CCGC	2 cut(s)	37, 368
BspANI	GGCC	3 cut(s)	67, 306, 387
BspFNI	CGCG	1 cut(s)	368
BspHI	TCATGA	1 cut(s)	1047
BspLI	GGNNCC	2 cut(s)	895, 1108
BspMI	ACCTGC	1 cut(s)	1132
BspPI	GGATC	2 cut(s)	488, 991
BspT107I	GGYRCC	1 cut(s)	893
BspTNI	GGTCTC	1 cut(s)	1239
BsrGI	TGTACA	1 cut(s)	676
BsrI	ACTGG	4 cut(s)	622, 817, 1165, 1321
BssECI	CCNNGG	3 cut(s)	14, 706, 750
BssMI	GATC	3 cut(s)	493, 983, 1054
Bst2UI	CCWGG	3 cut(s)	752, 855, 973
BstAPI	GCANNNNNTGC	2 cut(s)	779, 1133
BstAUI	TGTACA	1 cut(s)	676
BstBAI	YACGTR	1 cut(s)	1093
BstC8I	GCNNGC	4 cut(s)	232, 243, 775, 1138
BstDEI	CTNAG	1 cut(s)	584
BstF5I	GGATG	3 cut(s)	701, 760, 895
BstFNI	CGCG	1 cut(s)	368
BstH2I	RGCGCY	1 cut(s)	584
BstHHI	GCGC	3 cut(s)	368, 583, 773
BstKTI	GATC	3 cut(s)	496, 986, 1057
BstMAI	GTCTC	2 cut(s)	1239, 1329
BstMBI	GATC	3 cut(s)	493, 983, 1054
BstMCI	CGRYCG	1 cut(s)	537
BstMWI	GCNNNNNNNGC	8 cut(s)	125, 212, 221, 224, 779, 1133, 1146, 1344
BstNI	CCWGG	3 cut(s)	752, 855, 973
BstNSI	RCATGY	1 cut(s)	1140
BstSCI	CCNGG	4 cut(s)	706, 750, 853, 971
BstSFI	CTRYAG	1 cut(s)	498
BstSNI	TACGTA	1 cut(s)	1093
BstUI	CGCG	1 cut(s)	368
BstV1I	GCAGC	8 cut(s)	140, 224, 227, 236, 239, 803, 1320, 1323
BsuI	GTATCC	1 cut(s)	1177
BsuRI	GGCC	3 cut(s)	67, 306, 387
BtsCI	GGATG	3 cut(s)	701, 760, 895
BtsI	GCAGTG	1 cut(s)	1147
BtsIMutI	CAGTG	6 cut(s)	556, 615, 723, 947, 1147, 1260
BveI	ACCTGC	1 cut(s)	1132
Cac8I	GCNNGC	4 cut(s)	232, 243, 775, 1138
CaiI	CAGNNNCTG	1 cut(s)	617
CciI	TCATGA	1 cut(s)	1047
CfoI	GCGC	3 cut(s)	368, 583, 773
Cfr13I	GGNCC	2 cut(s)	305, 851
Csp6I	GTAC	3 cut(s)	522, 677, 1158
CviAII	CATG	6 cut(s)	219, 860, 1006, 1048, 1137, 1155
CviQI	GTAC	3 cut(s)	522, 677, 1158
DdeI	CTNAG	1 cut(s)	584
DpnI	GATC	3 cut(s)	495, 985, 1056
DpnII	GATC	3 cut(s)	493, 983, 1054
DriI	GACNNNNNGTC	1 cut(s)	863
Eam1105I	GACNNNNNGTC	1 cut(s)	863
Eco105I	TACGTA	1 cut(s)	1093
Eco147I	AGGCCT	1 cut(s)	387
Eco31I	GGTCTC	1 cut(s)	1239
Eco47I	GGWCC	1 cut(s)	851
Eco47III	AGCGCT	1 cut(s)	582
Eco57I	CTGAAG	1 cut(s)	46
EcoRII	CCWGG	3 cut(s)	750, 853, 971
FaeI	CATG	6 cut(s)	222, 863, 1009, 1051, 1140, 1158
FalI	AAGNNNNNCTT	2 cut(s)	766, 798
FaqI	GGGAC	1 cut(s)	1250
FatI	CATG	6 cut(s)	218, 859, 1005, 1047, 1136, 1154
FauI	CCCGC	1 cut(s)	361
FauNDI	CATATG	1 cut(s)	1240
FbaI	TGATCA	1 cut(s)	1054
FblI	GTMKAC	2 cut(s)	150, 540
Fnu4HI	GCNGC	8 cut(s)	129, 213, 216, 225, 228, 817, 1309, 1312
FokI	GGATG	3 cut(s)	688, 767, 902
Fsp4HI	GCNGC	8 cut(s)	129, 213, 216, 225, 228, 817, 1309, 1312
FspBI	CTAG	2 cut(s)	881, 1172
GlaI	GCGC	3 cut(s)	367, 582, 772
GluI	GCNGC	8 cut(s)	129, 213, 216, 225, 228, 817, 1309, 1312
HaeII	RGCGCY	1 cut(s)	584
HaeIII	GGCC	3 cut(s)	67, 306, 387
HapII	CCGG	3 cut(s)	303, 708, 768
HhaI	GCGC	3 cut(s)	368, 583, 773
Hin1II	CATG	6 cut(s)	222, 863, 1009, 1051, 1140, 1158
Hin6I	GCGC	3 cut(s)	366, 581, 771
HinP1I	GCGC	3 cut(s)	366, 581, 771
HindIII	AAGCTT	2 cut(s)	413, 900
HinfI	GANTC	6 cut(s)	479, 530, 662, 732, 864, 957
HpaII	CCGG	3 cut(s)	303, 708, 768
HphI	GGTGA	3 cut(s)	32, 48, 910
Hpy166II	GTNNAC	6 cut(s)	151, 408, 541, 844, 851, 1096
Hpy188I	TCNGA	4 cut(s)	434, 926, 962, 1030
Hpy188III	TCNNGA	2 cut(s)	1048, 1252
Hpy8I	GTNNAC	6 cut(s)	151, 408, 541, 844, 851, 1096
HpyAV	CCTTC	3 cut(s)	70, 398, 749
HpyCH4IV	ACGT	2 cut(s)	825, 1092
HpyF10VI	GCNNNNNNNGC	8 cut(s)	125, 212, 221, 224, 779, 1133, 1146, 1344
HpyF3I	CTNAG	1 cut(s)	584
HpySE526I	ACGT	2 cut(s)	825, 1092
Hsp92II	CATG	6 cut(s)	222, 863, 1009, 1051, 1140, 1158
HspAI	GCGC	3 cut(s)	366, 581, 771
Ksp22I	TGATCA	1 cut(s)	1054
Kzo9I	GATC	3 cut(s)	493, 983, 1054
LmnI	GCTCC	1 cut(s)	371
Lsp1109I	GCAGC	8 cut(s)	140, 224, 227, 236, 239, 803, 1320, 1323
LweI	GCATC	1 cut(s)	254
MaeI	CTAG	2 cut(s)	881, 1172
MaeII	ACGT	2 cut(s)	825, 1092
MaeIII	GTNAC	8 cut(s)	89, 253, 545, 607, 613, 691, 1067, 1142
MalI	GATC	3 cut(s)	495, 985, 1056
MboI	GATC	3 cut(s)	493, 983, 1054
MboII	GAAGA	4 cut(s)	122, 148, 539, 1293
MfeI	CAATTG	1 cut(s)	1272
MluCI	AATT	4 cut(s)	94, 310, 627, 1272
MlyI	GAGTC	4 cut(s)	473, 656, 873, 966
MmeI	TCCRAC	1 cut(s)	141
MnlI	CCTC	9 cut(s)	9, 428, 651, 662, 869, 974, 1200, 1228, 1259
MseI	TTAA	1 cut(s)	933
MslI	CAYNNNNRTG	1 cut(s)	1215
MspI	CCGG	3 cut(s)	303, 708, 768
MspR9I	CCNGG	4 cut(s)	708, 752, 855, 973
MunI	CAATTG	1 cut(s)	1272
MvaI	CCWGG	3 cut(s)	752, 855, 973
MvnI	CGCG	1 cut(s)	368
MwoI	GCNNNNNNNGC	8 cut(s)	125, 212, 221, 224, 779, 1133, 1146, 1344
NciI	CCSGG	1 cut(s)	708
NdeI	CATATG	1 cut(s)	1240
NdeII	GATC	3 cut(s)	493, 983, 1054
NlaIII	CATG	6 cut(s)	222, 863, 1009, 1051, 1140, 1158
NlaIV	GGNNCC	2 cut(s)	895, 1108
NmuCI	GTSAC	5 cut(s)	89, 607, 613, 1067, 1142
NspI	RCATGY	1 cut(s)	1140
PaeI	GCATGC	1 cut(s)	1140
PagI	TCATGA	1 cut(s)	1047
PceI	AGGCCT	1 cut(s)	387
PfeI	GAWTC	2 cut(s)	530, 732
PflMI	CCANNNNNTGG	2 cut(s)	757, 1160
PkrI	GCNGC	8 cut(s)	130, 214, 217, 226, 229, 818, 1310, 1313
PleI	GAGTC	4 cut(s)	473, 656, 872, 965
PpsI	GAGTC	4 cut(s)	473, 656, 872, 965
Ppu21I	YACGTR	1 cut(s)	1093
Psp6I	CCWGG	3 cut(s)	750, 853, 971
PspGI	CCWGG	3 cut(s)	750, 853, 971
PspN4I	GGNNCC	2 cut(s)	895, 1108
PspPI	GGNCC	2 cut(s)	305, 851
PstNI	CAGNNNCTG	1 cut(s)	617
RsaI	GTAC	3 cut(s)	523, 678, 1159
RsaNI	GTAC	3 cut(s)	522, 677, 1158
RseI	CAYNNNNRTG	1 cut(s)	1215
SaqAI	TTAA	1 cut(s)	933
SatI	GCNGC	8 cut(s)	129, 213, 216, 225, 228, 817, 1309, 1312
Sau3AI	GATC	3 cut(s)	493, 983, 1054
Sau96I	GGNCC	2 cut(s)	305, 851
SchI	GAGTC	4 cut(s)	473, 656, 873, 966
ScrFI	CCNGG	4 cut(s)	708, 752, 855, 973
SfaNI	GCATC	1 cut(s)	254
SfcI	CTRYAG	1 cut(s)	498
SinI	GGWCC	1 cut(s)	851
SmiMI	CAYNNNNRTG	1 cut(s)	1215
SmlI	CTYRAG	4 cut(s)	401, 653, 1250, 1326
SmoI	CTYRAG	4 cut(s)	401, 653, 1250, 1326
SnaBI	TACGTA	1 cut(s)	1093
SphI	GCATGC	1 cut(s)	1140
Sse9I	AATT	4 cut(s)	94, 310, 627, 1272
SseBI	AGGCCT	1 cut(s)	387
SsiI	CCGC	2 cut(s)	37, 368
SspMI	CTAG	2 cut(s)	881, 1172
StuI	AGGCCT	1 cut(s)	387
StyD4I	CCNGG	4 cut(s)	706, 750, 853, 971
TaiI	ACGT	2 cut(s)	828, 1095
TaqI	TCGA	2 cut(s)	533, 1035
TasI	AATT	4 cut(s)	94, 310, 627, 1272
TatI	WGTACW	3 cut(s)	521, 676, 1157
TfiI	GAWTC	2 cut(s)	530, 732
Tru1I	TTAA	1 cut(s)	933
Tru9I	TTAA	1 cut(s)	933
TscAI	CASTG	6 cut(s)	556, 622, 730, 954, 1147, 1267
TseFI	GTSAC	5 cut(s)	89, 607, 613, 1067, 1142
TseI	GCWGC	8 cut(s)	128, 212, 215, 224, 227, 816, 1308, 1311
Tsp45I	GTSAC	5 cut(s)	89, 607, 613, 1067, 1142
TspDTI	ATGAA	4 cut(s)	519, 690, 820, 1301
TspGWI	ACGGA	1 cut(s)	969
TspRI	CASTG	6 cut(s)	556, 622, 730, 954, 1147, 1267
Van91I	CCANNNNNTGG	2 cut(s)	757, 1160
VpaK11BI	GGWCC	1 cut(s)	851
XceI	RCATGY	1 cut(s)	1140
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1328
XmiI	GTMKAC	2 cut(s)	150, 540
XspI	CTAG	2 cut(s)	881, 1172

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.