Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0009157

Physical Location & Seq

Genomic Coordinates Reverse (-)

79107463 .. 79109409

Gene Structure 1947 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG614600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1158 bp

ATGAGTACTTTCAAACTAAGCAGCCTGGCATTGATTGTGCTCATTGCCTTTTCTATTTGGTCTTCGAGCTTGTTGGAGACTTGTGAAGCTAGAAAAGGCAAGCATCATCAATGGAGGAAAAACCGAGGGGTGAAAAGGGATTATGGCGGTCATCATCAACATCATCACCCTTCAGGCCACACTCTGTCGGCTTTGAAAAGTGACAATTACATCACACCGGAAGATATTGCTGTGAGTGCAGCACAGAAGAATAGTGCCGTCTACAATGTGTTGGACTACGGTGCTAAAGGAGATGGAAAGGCAGATGACACAAAGGCATTCGCAGCAGCATGGGCAGCAGCGTGCAAAGTGCAAGCATCAACCGTAACTGTTCCATCTGGGTCTGTATTCCTTGTCAAACCTATCTCTTTCTCCGGCCCTAATTGTCAAACAGACATTGTATTTCAGTTAGATGGAAAAATCATAGCCCCGACAGGTGCGGGAGCGTGGGGTTCAGGCCTTCTACAATGGCTTGAGTTCACAAAGCTTCAAAGACTTACCATCAGAGGTAAAGGTGTGATTGATGGACAAGGTGCAGTTTGGTGGAATGACTCGCCCACATACGATCCTACAGATGAAACAGCAGACAACAGTACAGAAGATTCGCAGACCGTAGACAGTTACAGTGGAAAAATGCCAAGCACAAAACCAACAGCGCTTAGGTTCTATGGAAGCAACGGTGTGACAGTCACTGGCATAACAATTCAAAACAGCCCTCAAACCCACCTCAAGTTTGACTCCTGCACTAATGTACAAGTTTCTGCCGTAACTATTTCATCCCCCGGCAACAGCCCCAACACTGATGGAATCCACCTTCAAAACTCCCAGGATGTGGTCATTTCCGGCGCAAGCCTTGCTTGTGGAGATGATTGTATATCAATACAAACTGGCTGCTCAAACGTATTCATACACAATGTAAACTGTGGACCTGGACATGGAGTCAGCATTGGAGGGCTAGGAAAGGATGGCACCAAAGCTTGTGTGTCAAACATCACCGTCCGAGATGTTAAAATGCAAAATACACTGAACGGAGTCAGAATAAAGACCTGGCAGGTATATACTCTTAGATTATTCCATCCAAACTTAATTGTGGACCTCATACTAGTTATAAGGCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004650 GO:0005575 GO:0005618 GO:0005623 GO:0008150 GO:0009664 GO:0009825 GO:0009827 GO:0009831 GO:0009987 GO:0016043 GO:0016049 GO:0016787 GO:0016798 GO:0030312 GO:0040007 GO:0042545 GO:0042547 GO:0044464 GO:0045229 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00040 ko01100 map00040 map01100

Pfam Domains

Protein Families

Glyco_hydro_28

Protein Analysis

385

Amino Acids

41.21

Weight (kDa)

8.31

Isoelectric Point (pI)

28.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pect-lyase_RHGA_epim	PF12708	88 - 135	1.2e-06	Rhamnogalacturonase A/epimerase, pectate lyase-like
Glyco_hydro_28	PF00295	117 - 367	5.8e-56	Glycosyl hydrolases family 28

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009157)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G14650 AT5G14650
fragaria_vesca	FvH4_6g50960 FvH4_6g50960 FvH4_6g50960 FvH4_6g50960 FvH4_6g50960
malus_domestica	MD09G1030100.v1.1 MD09G1030200.v1.1 MD17G1032000.v1.1
prunus_persica	Prupe.3G287200_v2.0.a1
pyrus_communis	pycom111g02420
rosa_chinensis	RchiOBHm_Chr2g0172361
rosa_laevigata	RLG00000022107
rosa_multiflora	Rmu_sc0000467.1_g000009
rosa_roxburghii	Rroxscaffold_2G00079950
rosa_rugosa	Rorug02G0558800
rosa_samantha	Rh2AG633800 Rh2BG647600 Rh2CG614600 Rh2DG662400
rosa_wichuraiana	Rw2G052500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1148
Acc36I	ACCTGC	1 cut(s)	1081
AccB1I	GGYRCC	1 cut(s)	1007
AccB7I	CCANNNNNTGG	1 cut(s)	871
AccI	GTMKAC	2 cut(s)	261, 654
AciI	CCGC	2 cut(s)	147, 479
AclWI	GGATC	1 cut(s)	599
AcuI	CTGAAG	1 cut(s)	156
AfaI	GTAC	3 cut(s)	7, 634, 792
AfeI	AGCGCT	1 cut(s)	696
AfiI	CCNNNNNNNGG	2 cut(s)	871, 974
AgsI	TTSAA	5 cut(s)	13, 196, 530, 746, 857
AhdI	GACNNNNNGTC	1 cut(s)	977
AhlI	ACTAGT	1 cut(s)	1141
AjnI	CCWGG	4 cut(s)	24, 864, 967, 1085
AluBI	AGCT	4 cut(s)	69, 89, 526, 1016
AluI	AGCT	4 cut(s)	69, 89, 526, 1016
Alw21I	GWGCWC	1 cut(s)	42
Alw26I	GTCTC	1 cut(s)	71
AlwI	GGATC	1 cut(s)	599
AlwNI	CAGNNNCTG	1 cut(s)	731
Aor51HI	AGCGCT	1 cut(s)	696
AoxI	GGCC	3 cut(s)	175, 415, 496
ApeKI	GCWGC	7 cut(s)	21, 239, 323, 326, 335, 338, 930
AspLEI	GCGC	2 cut(s)	697, 887
AspS9I	GGNCC	3 cut(s)	416, 965, 1132
AsuC2I	CCSGG	1 cut(s)	822
AsuHPI	GGTGA	3 cut(s)	142, 158, 1024
AvaII	GGWCC	2 cut(s)	965, 1132
BanI	GGYRCC	1 cut(s)	1007
BbsI	GAAGAC	1 cut(s)	54
Bbv12I	GWGCWC	1 cut(s)	42
BbvI	GCAGC	7 cut(s)	33, 251, 335, 338, 347, 350, 917
BccI	CCATC	8 cut(s)	287, 382, 446, 548, 557, 836, 998, 1122
BceAI	ACGGC	2 cut(s)	242, 788
BciT130I	CCWGG	4 cut(s)	26, 866, 969, 1087
BcnI	CCSGG	1 cut(s)	822
BcoDI	GTCTC	1 cut(s)	71
BcuI	ACTAGT	1 cut(s)	1141
BfaI	CTAG	3 cut(s)	90, 995, 1142
BfmI	CTRYAG	1 cut(s)	609
BfoI	RGCGCY	1 cut(s)	698
BfuAI	ACCTGC	1 cut(s)	1081
BisI	GCNGC	7 cut(s)	22, 240, 324, 327, 336, 339, 931
BlsI	GCNGC	7 cut(s)	23, 241, 325, 328, 337, 340, 932
BmcAI	AGTACT	1 cut(s)	7
Bme1390I	CCNGG	5 cut(s)	26, 822, 866, 969, 1087
Bme18I	GGWCC	2 cut(s)	965, 1132
BmeRI	GACNNNNNGTC	1 cut(s)	977
BmgT120I	GGNCC	3 cut(s)	416, 965, 1132
BmiI	GGNNCC	1 cut(s)	1009
BmrFI	CCNGG	5 cut(s)	26, 822, 866, 969, 1087
BmsI	GCATC	2 cut(s)	112, 365
BpiI	GAAGAC	1 cut(s)	54
Bpu10I	CCTNAGC	1 cut(s)	698
BpuEI	CTTGAG	2 cut(s)	533, 752
BpuMI	CCSGG	1 cut(s)	822
BsaJI	CCNNGG	3 cut(s)	124, 820, 864
BsaWI	WCCGGW	1 cut(s)	217
Bsc4I	CCNNNNNNNGG	2 cut(s)	871, 974
Bse1I	ACTGG	2 cut(s)	736, 931
Bse3DI	GCAATG	1 cut(s)	42
BseBI	CCWGG	4 cut(s)	26, 866, 969, 1087
BseDI	CCNNGG	3 cut(s)	124, 820, 864
BseGI	GGATG	4 cut(s)	815, 874, 1009, 1114
BseLI	CCNNNNNNNGG	2 cut(s)	871, 974
BseMI	GCAATG	1 cut(s)	42
BseNI	ACTGG	2 cut(s)	736, 931
BseXI	GCAGC	7 cut(s)	33, 251, 335, 338, 347, 350, 917
BsgI	GTGCAG	3 cut(s)	258, 594, 766
BshFI	GGCC	3 cut(s)	177, 417, 498
BshNI	GGYRCC	1 cut(s)	1007
BsiHKAI	GWGCWC	1 cut(s)	42
BsiSI	CCGG	4 cut(s)	218, 414, 822, 882
BslI	CCNNNNNNNGG	2 cut(s)	871, 974
BsmAI	GTCTC	1 cut(s)	71
BsmI	GAATGC	1 cut(s)	317
BsnI	GGCC	3 cut(s)	177, 417, 498
Bsp1286I	GDGCHC	1 cut(s)	42
Bsp1407I	TGTACA	1 cut(s)	790
Bsp143I	GATC	1 cut(s)	604
BspACI	CCGC	2 cut(s)	147, 479
BspANI	GGCC	3 cut(s)	177, 417, 498
BspLI	GGNNCC	1 cut(s)	1009
BspMI	ACCTGC	1 cut(s)	1081
BspPI	GGATC	1 cut(s)	599
BspT107I	GGYRCC	1 cut(s)	1007
BsrDI	GCAATG	1 cut(s)	42
BsrGI	TGTACA	1 cut(s)	790
BsrI	ACTGG	2 cut(s)	736, 931
BssECI	CCNNGG	3 cut(s)	124, 820, 864
BssMI	GATC	1 cut(s)	604
Bst2UI	CCWGG	4 cut(s)	26, 866, 969, 1087
BstAPI	GCANNNNNTGC	1 cut(s)	893
BstAUI	TGTACA	1 cut(s)	790
BstC8I	GCNNGC	4 cut(s)	101, 343, 354, 889
BstDEI	CTNAG	3 cut(s)	17, 698, 1103
BstF5I	GGATG	4 cut(s)	815, 874, 1009, 1114
BstH2I	RGCGCY	1 cut(s)	698
BstHHI	GCGC	2 cut(s)	697, 887
BstKTI	GATC	1 cut(s)	607
BstMAI	GTCTC	1 cut(s)	71
BstMBI	GATC	1 cut(s)	604
BstMWI	GCNNNNNNNGC	5 cut(s)	236, 323, 332, 335, 893
BstNI	CCWGG	4 cut(s)	26, 866, 969, 1087
BstSCI	CCNGG	5 cut(s)	24, 820, 864, 967, 1085
BstSFI	CTRYAG	1 cut(s)	609
BstV1I	GCAGC	7 cut(s)	33, 251, 335, 338, 347, 350, 917
BstV2I	GAAGAC	1 cut(s)	54
BsuRI	GGCC	3 cut(s)	177, 417, 498
BtsCI	GGATG	4 cut(s)	815, 874, 1009, 1114
BtsIMutI	CAGTG	4 cut(s)	670, 729, 837, 1061
BveI	ACCTGC	1 cut(s)	1081
Cac8I	GCNNGC	4 cut(s)	101, 343, 354, 889
CaiI	CAGNNNCTG	1 cut(s)	731
CfoI	GCGC	2 cut(s)	697, 887
Cfr13I	GGNCC	3 cut(s)	416, 965, 1132
Csp6I	GTAC	3 cut(s)	6, 633, 791
CviAII	CATG	2 cut(s)	330, 974
CviQI	GTAC	3 cut(s)	6, 633, 791
DdeI	CTNAG	3 cut(s)	17, 698, 1103
DpnI	GATC	1 cut(s)	606
DpnII	GATC	1 cut(s)	604
DriI	GACNNNNNGTC	1 cut(s)	977
Eam1105I	GACNNNNNGTC	1 cut(s)	977
Eco147I	AGGCCT	1 cut(s)	498
Eco47I	GGWCC	2 cut(s)	965, 1132
Eco47III	AGCGCT	1 cut(s)	696
Eco57I	CTGAAG	1 cut(s)	156
EcoRII	CCWGG	4 cut(s)	24, 864, 967, 1085
FaeI	CATG	2 cut(s)	333, 977
FalI	AAGNNNNNCTT	2 cut(s)	880, 912
FatI	CATG	2 cut(s)	329, 973
FauI	CCCGC	1 cut(s)	472
FblI	GTMKAC	2 cut(s)	261, 654
Fnu4HI	GCNGC	7 cut(s)	22, 240, 324, 327, 336, 339, 931
FokI	GGATG	4 cut(s)	802, 881, 1016, 1101
Fsp4HI	GCNGC	7 cut(s)	22, 240, 324, 327, 336, 339, 931
FspBI	CTAG	3 cut(s)	90, 995, 1142
GlaI	GCGC	2 cut(s)	696, 886
GluI	GCNGC	7 cut(s)	22, 240, 324, 327, 336, 339, 931
HaeII	RGCGCY	1 cut(s)	698
HaeIII	GGCC	3 cut(s)	177, 417, 498
HapII	CCGG	4 cut(s)	218, 414, 822, 882
HhaI	GCGC	2 cut(s)	697, 887
Hin1II	CATG	2 cut(s)	333, 977
Hin6I	GCGC	2 cut(s)	695, 885
HinP1I	GCGC	2 cut(s)	695, 885
HindIII	AAGCTT	2 cut(s)	524, 1014
HinfI	GANTC	6 cut(s)	590, 641, 776, 846, 978, 1071
HpaII	CCGG	4 cut(s)	218, 414, 822, 882
HphI	GGTGA	3 cut(s)	142, 158, 1024
Hpy166II	GTNNAC	6 cut(s)	262, 519, 655, 958, 965, 1132
Hpy188I	TCNGA	3 cut(s)	545, 1040, 1076
Hpy8I	GTNNAC	6 cut(s)	262, 519, 655, 958, 965, 1132
HpyAV	CCTTC	3 cut(s)	180, 509, 863
HpyCH4IV	ACGT	1 cut(s)	939
HpyCH4V	TGCA	6 cut(s)	239, 345, 352, 575, 783, 1054
HpyF10VI	GCNNNNNNNGC	5 cut(s)	236, 323, 332, 335, 893
HpyF3I	CTNAG	3 cut(s)	17, 698, 1103
HpySE526I	ACGT	1 cut(s)	939
Hsp92II	CATG	2 cut(s)	333, 977
HspAI	GCGC	2 cut(s)	695, 885
Kzo9I	GATC	1 cut(s)	604
LmnI	GCTCC	1 cut(s)	482
Lsp1109I	GCAGC	7 cut(s)	33, 251, 335, 338, 347, 350, 917
LweI	GCATC	2 cut(s)	112, 365
MaeI	CTAG	3 cut(s)	90, 995, 1142
MaeII	ACGT	1 cut(s)	939
MaeIII	GTNAC	6 cut(s)	200, 364, 659, 721, 727, 805
MalI	GATC	1 cut(s)	606
MboI	GATC	1 cut(s)	604
MboII	GAAGA	4 cut(s)	54, 233, 259, 650
MhlI	GDGCHC	1 cut(s)	42
MluCI	AATT	4 cut(s)	205, 421, 741, 1125
MlyI	GAGTC	4 cut(s)	584, 770, 987, 1080
MmeI	TCCRAC	2 cut(s)	54, 252
MnlI	CCTC	7 cut(s)	108, 119, 539, 765, 776, 983, 1145
MseI	TTAA	2 cut(s)	1047, 1124
MspI	CCGG	4 cut(s)	218, 414, 822, 882
MspR9I	CCNGG	5 cut(s)	26, 822, 866, 969, 1087
Mva1269I	GAATGC	1 cut(s)	317
MvaI	CCWGG	4 cut(s)	26, 866, 969, 1087
MwoI	GCNNNNNNNGC	5 cut(s)	236, 323, 332, 335, 893
NciI	CCSGG	1 cut(s)	822
NdeII	GATC	1 cut(s)	604
NlaIII	CATG	2 cut(s)	333, 977
NlaIV	GGNNCC	1 cut(s)	1009
NmuCI	GTSAC	3 cut(s)	200, 721, 727
PceI	AGGCCT	1 cut(s)	498
PctI	GAATGC	1 cut(s)	317
PfeI	GAWTC	2 cut(s)	641, 846
PflMI	CCANNNNNTGG	1 cut(s)	871
PkrI	GCNGC	7 cut(s)	23, 241, 325, 328, 337, 340, 932
PleI	GAGTC	4 cut(s)	584, 770, 986, 1079
PpsI	GAGTC	4 cut(s)	584, 770, 986, 1079
PsiI	TTATAA	1 cut(s)	1148
Psp6I	CCWGG	4 cut(s)	24, 864, 967, 1085
PspGI	CCWGG	4 cut(s)	24, 864, 967, 1085
PspN4I	GGNNCC	1 cut(s)	1009
PspPI	GGNCC	3 cut(s)	416, 965, 1132
PstNI	CAGNNNCTG	1 cut(s)	731
RsaI	GTAC	3 cut(s)	7, 634, 792
RsaNI	GTAC	3 cut(s)	6, 633, 791
SaqAI	TTAA	2 cut(s)	1047, 1124
SatI	GCNGC	7 cut(s)	22, 240, 324, 327, 336, 339, 931
Sau3AI	GATC	1 cut(s)	604
Sau96I	GGNCC	3 cut(s)	416, 965, 1132
ScaI	AGTACT	1 cut(s)	7
SchI	GAGTC	4 cut(s)	584, 770, 987, 1080
ScrFI	CCNGG	5 cut(s)	26, 822, 866, 969, 1087
SduI	GDGCHC	1 cut(s)	42
SfaNI	GCATC	2 cut(s)	112, 365
SfcI	CTRYAG	1 cut(s)	609
SinI	GGWCC	2 cut(s)	965, 1132
SmlI	CTYRAG	2 cut(s)	512, 767
SmoI	CTYRAG	2 cut(s)	512, 767
SpeI	ACTAGT	1 cut(s)	1141
Sse9I	AATT	4 cut(s)	205, 421, 741, 1125
SseBI	AGGCCT	1 cut(s)	498
SsiI	CCGC	2 cut(s)	147, 479
SspMI	CTAG	3 cut(s)	90, 995, 1142
StuI	AGGCCT	1 cut(s)	498
StyD4I	CCNGG	5 cut(s)	24, 820, 864, 967, 1085
TaiI	ACGT	1 cut(s)	942
TaqI	TCGA	1 cut(s)	65
TasI	AATT	4 cut(s)	205, 421, 741, 1125
TatI	WGTACW	3 cut(s)	5, 632, 790
TfiI	GAWTC	2 cut(s)	641, 846
Tru1I	TTAA	2 cut(s)	1047, 1124
Tru9I	TTAA	2 cut(s)	1047, 1124
TscAI	CASTG	4 cut(s)	670, 736, 844, 1068
TseFI	GTSAC	3 cut(s)	200, 721, 727
TseI	GCWGC	7 cut(s)	21, 239, 323, 326, 335, 338, 930
Tsp45I	GTSAC	3 cut(s)	200, 721, 727
TspDTI	ATGAA	3 cut(s)	630, 804, 934
TspGWI	ACGGA	1 cut(s)	1083
TspRI	CASTG	4 cut(s)	670, 736, 844, 1068
Van91I	CCANNNNNTGG	1 cut(s)	871
VpaK11BI	GGWCC	2 cut(s)	965, 1132
XmiI	GTMKAC	2 cut(s)	261, 654
XspI	CTAG	3 cut(s)	90, 995, 1142
ZrmI	AGTACT	1 cut(s)	7

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.