Rw2G052510

Shaggy-related protein kinase epsilon

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
Physical Location & Seq
Forward (+)
80434207 .. 80438467
4261 bp
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UTR
Exon/CDS
Intron
Rw2G052510.1

Sequence Viewer

Length: 1308 bp
ATGCTACGTGTATACAGCAAGAAGAGGGCCCAAACCCCAGGATCAATGGCTTCAGCTGGTCCGGCGGCTTCGGCAGTAGCGCCGGCTTCGAGTGTTGAAAATCCGAATGGTAACAAGGCAAGGTTTGCTGATAAGCTACCGGAGGAAATTAATGAGATGAAGATCAAAGATGAGAAGGTGAAATTTACTTTGGAAATAGAAGCAGCTGTGGTGGATGGGAATGGGACTGAAACCGGCCACATTATTGTGACTACGATCGGTGGTCGAAATGGTCAGCCTAAACAGACTGTAAGTTACATGGCAGAGCGTGTTGTTGGGCAGGGCTCATTCGGTATTGTCTTTCAGGCTAAATGCCTTGAAACTGGAGAAACTGTTGCAATCAAGAAGGTTTTGCAGGACAAGAGATACAAGAATCGTGAGTTGCAAACAATGCGCCTTCTTGATCATCCTAATGTTGTTGCACTCAAACACTGCTTCTTTTCGACCACGGATAAGGATGAGCTCTATCTAAATCTGGTGCTTGAATATGTACCTGAGACTGTTTACCGTGTGGCAAAACACTACAGCAAGGCAAATCAGCGGATGCCTATGATTTATGTCAAACTCTATACGTATCAGATTTGCAGAGCTCTGGCATATATTCACGGAGGTATAGGAGTATGCCACAGGGACATTAAGCCACAGAACCTCTTGGTTAATCCCCATACTCATCAAGTCAAGTTGTGTGATTTTGGAAGTGCAAAAGTTCTGGTGAAAGGCGAACCAAATATATCATACATTTGTTCACGTTATTATCGAGCACCTGAACTCATATTTGGGGCAACTGAATACACTACTGCCATTGACATCTGGTCTGTGGGTTGCGTGCTTGCTGAACTGCTTCTTGGACAGCCTCTCTTCCCAGGTGAGAGTGGAGTTGATCAGCTTGTTGAGATTATTAAGGTACTCGGCACCCCAACTCGTGAGGAAATCAAATGCATGAACCCGAATTATACAGAATTCAAATTTCCACAAATCAAGGCCCACCCTTGGCACAAAATATTCCATAAGCGCATGCCCCCAGAAGCAGTAGATCTTGTGTCAAGACTTCTTCAATATTCTCCCAGCCTAAGGTGTACTGCTCTTGAGGCTTGTGTCCACCCATTCTTCGATCAACTCCGTGATCCTAATACTCGTCTCCCTAATGGACGACCTTTGCCTCCTCTCTTCAACTTCAAGCCTCAAGAGCTGAAGGGGGCAACTATTGAGCTTTTATCCAGACTGATACCTGAGCACGCGAGAAAGCAATGTGCCTTTCTAGGTACCTAG

Protein Analysis

435

Amino Acids

48.82

Weight (kDa)

9.06

Isoelectric Point (pI)

36.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 100 - 383 3.9e-62 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 102 - 301 2.1e-25 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0012709)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 1301
AccB1I GGYRCC 2 cut(s) 950, 1301
AccI GTMKAC 1 cut(s) 12
AccII CGCG 1 cut(s) 1277
AciI CCGC 2 cut(s) 65, 580
AclWI GGATC 2 cut(s) 49, 1157
AcoI YGGCCR 1 cut(s) 235
AcsI RAATTY 3 cut(s) 182, 998, 1004
AcuI CTGAAG 2 cut(s) 36, 1250
AfaI GTAC 4 cut(s) 531, 945, 1117, 1303
AfiI CCNNNNNNNGG 2 cut(s) 1029, 1110
AflIII ACRYGT 1 cut(s) 7
AgsI TTSAA 7 cut(s) 98, 359, 524, 1003, 1094, 1210, 1216
AhdI GACNNNNNGTC 1 cut(s) 850
AjnI CCWGG 2 cut(s) 37, 901
AjuI GAANNNNNNNTTGG 6 cut(s) 173, 205, 798, 830, 867, 899
AluBI AGCT 8 cut(s) 56, 136, 206, 502, 629, 925, 1228, 1249
AluI AGCT 8 cut(s) 56, 136, 206, 502, 629, 925, 1228, 1249
Alw21I GWGCWC 4 cut(s) 504, 631, 802, 1275
Alw26I GTCTC 2 cut(s) 530, 1181
AlwI GGATC 2 cut(s) 49, 1157
AoxI GGCC 3 cut(s) 27, 235, 1020
ApaI GGGCCC 1 cut(s) 31
ApeKI GCWGC 1 cut(s) 203
ApoI RAATTY 3 cut(s) 182, 998, 1004
AseI ATTAAT 1 cut(s) 150
Asp700I GAANNNNTTC 1 cut(s) 879
Asp718I GGTACC 1 cut(s) 1301
AspLEI GCGC 3 cut(s) 82, 435, 1053
AspS9I GGNCC 4 cut(s) 27, 28, 59, 1021
AsuHPI GGTGA 3 cut(s) 190, 763, 917
AvaII GGWCC 1 cut(s) 59
AxyI CCTNAGG 1 cut(s) 1109
BaeGI GKGCMC 1 cut(s) 31
BanI GGYRCC 2 cut(s) 950, 1301
BanII GRGCYC 4 cut(s) 31, 326, 504, 631
BauI CACGAG 1 cut(s) 960
Bbv12I GWGCWC 4 cut(s) 504, 631, 802, 1275
BbvI GCAGC 1 cut(s) 215
BccI CCATC 1 cut(s) 209
BciT130I CCWGG 2 cut(s) 39, 903
BclI TGATCA 2 cut(s) 442, 919
BcoDI GTCTC 2 cut(s) 530, 1181
BfaI CTAG 2 cut(s) 1298, 1306
BfmI CTRYAG 1 cut(s) 562
BfoI RGCGCY 1 cut(s) 83
BglII AGATCT 1 cut(s) 1072
BisI GCNGC 2 cut(s) 66, 204
BlsI GCNGC 2 cut(s) 67, 205
Bme1390I CCNGG 2 cut(s) 39, 903
Bme18I GGWCC 1 cut(s) 59
BmeRI GACNNNNNGTC 1 cut(s) 850
BmgT120I GGNCC 4 cut(s) 27, 28, 59, 1021
BmiI GGNNCC 3 cut(s) 29, 952, 1303
BmrFI CCNGG 2 cut(s) 39, 903
BmsI GCATC 1 cut(s) 573
BpmI CTGGAG 1 cut(s) 384
Bpu10I CCTNAGC 1 cut(s) 1269
BpuEI CTTGAG 2 cut(s) 1145, 1206
BsaAI YACGTR 2 cut(s) 8, 612
BsaBI GATNNNNATC 1 cut(s) 161
BsaJI CCNNGG 4 cut(s) 37, 486, 901, 1028
BsaWI WCCGGW 1 cut(s) 139
BsaXI ACNNNNNCTCC 2 cut(s) 357, 387
Bsc4I CCNNNNNNNGG 2 cut(s) 1029, 1110
Bse118I RCCGGY 2 cut(s) 82, 233
Bse1I ACTGG 1 cut(s) 367
Bse21I CCTNAGG 1 cut(s) 1109
Bse3DI GCAATG 1 cut(s) 1292
Bse8I GATNNNNATC 1 cut(s) 161
BseBI CCWGG 2 cut(s) 39, 903
BseDI CCNNGG 4 cut(s) 37, 486, 901, 1028
BseGI GGATG 4 cut(s) 220, 445, 502, 588
BseJI GATNNNNATC 1 cut(s) 161
BseLI CCNNNNNNNGG 2 cut(s) 1029, 1110
BseMI GCAATG 1 cut(s) 1292
BseMII CTCAG 2 cut(s) 525, 1260
BseNI ACTGG 1 cut(s) 367
BseRI GAGGAG 1 cut(s) 1191
BseSI GKGCMC 1 cut(s) 31
BseXI GCAGC 1 cut(s) 215
BseYI CCCAGC 1 cut(s) 1103
Bsh1236I CGCG 1 cut(s) 1277
Bsh1285I CGRYCG 1 cut(s) 258
BshFI GGCC 3 cut(s) 29, 237, 1022
BshNI GGYRCC 2 cut(s) 950, 1301
BsiEI CGRYCG 1 cut(s) 258
BsiHKAI GWGCWC 4 cut(s) 504, 631, 802, 1275
BsiSI CCGG 4 cut(s) 62, 83, 140, 234
BslFI GGGAC 2 cut(s) 238, 683
BslI CCNNNNNNNGG 2 cut(s) 1029, 1110
BsmAI GTCTC 2 cut(s) 530, 1181
BsmBI CGTCTC 1 cut(s) 1181
BsmFI GGGAC 2 cut(s) 238, 683
BsnI GGCC 3 cut(s) 29, 237, 1022
Bsp120I GGGCCC 1 cut(s) 27
Bsp1286I GDGCHC 6 cut(s) 31, 326, 504, 631, 802, 1275
Bsp143I GATC 8 cut(s) 41, 162, 255, 442, 919, 1072, 1150, 1162
BspACI CCGC 2 cut(s) 65, 580
BspANI GGCC 3 cut(s) 29, 237, 1022
BspCNI CTCAG 2 cut(s) 526, 1261
BspFNI CGCG 1 cut(s) 1277
BspLI GGNNCC 3 cut(s) 29, 952, 1303
BspPI GGATC 2 cut(s) 49, 1157
BspT107I GGYRCC 2 cut(s) 950, 1301
BsrDI GCAATG 1 cut(s) 1292
BsrFI RCCGGY 2 cut(s) 82, 233
BsrI ACTGG 1 cut(s) 367
BssAI RCCGGY 2 cut(s) 82, 233
BssECI CCNNGG 4 cut(s) 37, 486, 901, 1028
BssMI GATC 8 cut(s) 41, 162, 255, 442, 919, 1072, 1150, 1162
BssNAI GTATAC 1 cut(s) 13
BssSI CACGAG 1 cut(s) 960
BssT1I CCWWGG 1 cut(s) 1028
Bst1107I GTATAC 1 cut(s) 13
Bst2BI CACGAG 1 cut(s) 960
Bst2UI CCWGG 2 cut(s) 39, 903
Bst4CI ACNGT 4 cut(s) 289, 373, 541, 548
Bst6I CTCTTC 3 cut(s) 17, 902, 1211
BstAPI GCANNNNNTGC 2 cut(s) 125, 430
BstBAI YACGTR 2 cut(s) 8, 612
BstC8I GCNNGC 5 cut(s) 84, 866, 870, 1055, 1275
BstDEI CTNAG 3 cut(s) 534, 1109, 1269
BstDSI CCRYGG 1 cut(s) 486
BstF5I GGATG 4 cut(s) 220, 445, 502, 588
BstFNI CGCG 1 cut(s) 1277
BstH2I RGCGCY 1 cut(s) 83
BstHHI GCGC 3 cut(s) 82, 435, 1053
BstKTI GATC 8 cut(s) 44, 165, 258, 445, 922, 1075, 1153, 1165
BstMAI GTCTC 2 cut(s) 530, 1181
BstMBI GATC 8 cut(s) 41, 162, 255, 442, 919, 1072, 1150, 1162
BstMCI CGRYCG 1 cut(s) 258
BstMWI GCNNNNNNNGC 6 cut(s) 62, 71, 125, 430, 1127, 1225
BstNI CCWGG 2 cut(s) 39, 903
BstNSI RCATGY 1 cut(s) 1057
BstSCI CCNGG 2 cut(s) 37, 901
BstSFI CTRYAG 1 cut(s) 562
BstSLI GKGCMC 1 cut(s) 31
BstSNI TACGTA 1 cut(s) 612
BstUI CGCG 1 cut(s) 1277
BstV1I GCAGC 1 cut(s) 215
BstX2I RGATCY 1 cut(s) 1072
BstYI RGATCY 1 cut(s) 1072
BstZ17I GTATAC 1 cut(s) 13
Bsu36I CCTNAGG 1 cut(s) 1109
BsuRI GGCC 3 cut(s) 29, 237, 1022
BtgI CCRYGG 1 cut(s) 486
BtsCI GGATG 4 cut(s) 220, 445, 502, 588
BtsI GCAGTG 1 cut(s) 469
BtsIMutI CAGTG 1 cut(s) 469
Cac8I GCNNGC 5 cut(s) 84, 866, 870, 1055, 1275
CfoI GCGC 3 cut(s) 82, 435, 1053
Cfr10I RCCGGY 2 cut(s) 82, 233
Cfr13I GGNCC 4 cut(s) 27, 28, 59, 1021
Csp6I GTAC 4 cut(s) 530, 944, 1116, 1302
CviAII CATG 3 cut(s) 298, 979, 1054
CviQI GTAC 4 cut(s) 530, 944, 1116, 1302
DdeI CTNAG 3 cut(s) 534, 1109, 1269
DpnI GATC 8 cut(s) 43, 164, 257, 444, 921, 1074, 1152, 1164
DpnII GATC 8 cut(s) 41, 162, 255, 442, 919, 1072, 1150, 1162
DriI GACNNNNNGTC 1 cut(s) 850
EaeI YGGCCR 1 cut(s) 235
Eam1104I CTCTTC 3 cut(s) 17, 902, 1211
Eam1105I GACNNNNNGTC 1 cut(s) 850
EarI CTCTTC 3 cut(s) 17, 902, 1211
Ecl136II GAGCTC 2 cut(s) 502, 629
Eco105I TACGTA 1 cut(s) 612
Eco130I CCWWGG 1 cut(s) 1028
Eco24I GRGCYC 4 cut(s) 31, 326, 504, 631
Eco47I GGWCC 1 cut(s) 59
Eco53kI GAGCTC 2 cut(s) 502, 629
Eco57I CTGAAG 2 cut(s) 36, 1250
Eco81I CCTNAGG 1 cut(s) 1109
EcoICRI GAGCTC 2 cut(s) 502, 629
EcoO109I RGGNCCY 1 cut(s) 27
EcoRI GAATTC 1 cut(s) 998
EcoRII CCWGG 2 cut(s) 37, 901
EcoT14I CCWWGG 1 cut(s) 1028
EcoT22I ATGCAT 1 cut(s) 980
EcoT38I GRGCYC 4 cut(s) 31, 326, 504, 631
ErhI CCWWGG 1 cut(s) 1028
Esp3I CGTCTC 1 cut(s) 1181
FaeI CATG 3 cut(s) 301, 982, 1057
FaqI GGGAC 2 cut(s) 238, 683
FatI CATG 3 cut(s) 297, 978, 1053
FbaI TGATCA 2 cut(s) 442, 919
FblI GTMKAC 1 cut(s) 12
Fnu4HI GCNGC 2 cut(s) 66, 204
FokI GGATG 4 cut(s) 227, 432, 509, 595
FriOI GRGCYC 4 cut(s) 31, 326, 504, 631
Fsp4HI GCNGC 2 cut(s) 66, 204
FspBI CTAG 2 cut(s) 1298, 1306
GlaI GCGC 3 cut(s) 81, 434, 1052
GluI GCNGC 2 cut(s) 66, 204
GsaI CCCAGC 1 cut(s) 1107
GsuI CTGGAG 1 cut(s) 384
HaeII RGCGCY 1 cut(s) 83
HaeIII GGCC 3 cut(s) 29, 237, 1022
HapII CCGG 4 cut(s) 62, 83, 140, 234
HhaI GCGC 3 cut(s) 82, 435, 1053
Hin1II CATG 3 cut(s) 301, 982, 1057
Hin6I GCGC 3 cut(s) 80, 433, 1051
HinP1I GCGC 3 cut(s) 80, 433, 1051
HinfI GANTC 1 cut(s) 412
HpaII CCGG 4 cut(s) 62, 83, 140, 234
HphI GGTGA 3 cut(s) 190, 763, 917
Hpy166II GTNNAC 5 cut(s) 13, 544, 785, 1116, 1138
Hpy188I TCNGA 2 cut(s) 105, 618
Hpy188III TCNNGA 8 cut(s) 382, 416, 440, 962, 1083, 1124, 1223, 1257
Hpy8I GTNNAC 5 cut(s) 13, 544, 785, 1116, 1138
HpyAV CCTTC 4 cut(s) 169, 379, 446, 1225
HpyCH4III ACNGT 4 cut(s) 289, 373, 541, 548
HpyCH4IV ACGT 3 cut(s) 7, 611, 787
HpyCH4V TGCA 7 cut(s) 377, 394, 424, 461, 624, 740, 978
HpyF10VI GCNNNNNNNGC 6 cut(s) 62, 71, 125, 430, 1127, 1225
HpyF3I CTNAG 3 cut(s) 534, 1109, 1269
HpySE526I ACGT 3 cut(s) 7, 611, 787
Hsp92II CATG 3 cut(s) 301, 982, 1057
HspAI GCGC 3 cut(s) 80, 433, 1051
KpnI GGTACC 1 cut(s) 1305
KroI GCCGGC 1 cut(s) 82
KroNI GCCGGC 1 cut(s) 84
Ksp22I TGATCA 2 cut(s) 442, 919
Kzo9I GATC 8 cut(s) 41, 162, 255, 442, 919, 1072, 1150, 1162
Lsp1109I GCAGC 1 cut(s) 215
LweI GCATC 1 cut(s) 573
MaeI CTAG 2 cut(s) 1298, 1306
MaeII ACGT 3 cut(s) 7, 611, 787
MaeIII GTNAC 3 cut(s) 110, 247, 293
MalI GATC 8 cut(s) 43, 164, 257, 444, 921, 1074, 1152, 1164
MboI GATC 8 cut(s) 41, 162, 255, 442, 919, 1072, 1150, 1162
MboII GAAGA 6 cut(s) 34, 172, 889, 1082, 1138, 1198
MflI RGATCY 1 cut(s) 1072
MhlI GDGCHC 6 cut(s) 31, 326, 504, 631, 802, 1275
MluCI AATT 5 cut(s) 147, 182, 988, 998, 1004
Mph1103I ATGCAT 1 cut(s) 980
MroNI GCCGGC 1 cut(s) 82
MroXI GAANNNNTTC 1 cut(s) 879
MseI TTAA 4 cut(s) 150, 675, 696, 939
MslI CAYNNNNRTG 2 cut(s) 245, 450
MspA1I CMGCKG 3 cut(s) 56, 206, 580
MspI CCGG 4 cut(s) 62, 83, 140, 234
MspR9I CCNGG 2 cut(s) 39, 903
MvaI CCWGG 2 cut(s) 39, 903
MvnI CGCG 1 cut(s) 1277
MwoI GCNNNNNNNGC 6 cut(s) 62, 71, 125, 430, 1127, 1225
NaeI GCCGGC 1 cut(s) 84
NdeII GATC 8 cut(s) 41, 162, 255, 442, 919, 1072, 1150, 1162
NgoMIV GCCGGC 1 cut(s) 82
NlaIII CATG 3 cut(s) 301, 982, 1057
NlaIV GGNNCC 3 cut(s) 29, 952, 1303
NmeAIII GCCGAG 1 cut(s) 927
NmuCI GTSAC 1 cut(s) 247
NsiI ATGCAT 1 cut(s) 980
NspI RCATGY 1 cut(s) 1057
PaeI GCATGC 1 cut(s) 1057
PcsI WCGNNNNNNNCGW 1 cut(s) 793
PdiI GCCGGC 1 cut(s) 84
PdmI GAANNNNTTC 1 cut(s) 879
PfeI GAWTC 1 cut(s) 412
PkrI GCNGC 2 cut(s) 67, 205
Ple19I CGATCG 1 cut(s) 258
Ppu21I YACGTR 2 cut(s) 8, 612
PshBI ATTAAT 1 cut(s) 150
Psp124BI GAGCTC 2 cut(s) 504, 631
Psp6I CCWGG 2 cut(s) 37, 901
PspFI CCCAGC 1 cut(s) 1103
PspGI CCWGG 2 cut(s) 37, 901
PspN4I GGNNCC 3 cut(s) 29, 952, 1303
PspOMI GGGCCC 1 cut(s) 27
PspPI GGNCC 4 cut(s) 27, 28, 59, 1021
PsuI RGATCY 1 cut(s) 1072
PvuI CGATCG 1 cut(s) 258
PvuII CAGCTG 2 cut(s) 56, 206
RsaI GTAC 4 cut(s) 531, 945, 1117, 1303
RsaNI GTAC 4 cut(s) 530, 944, 1116, 1302
RseI CAYNNNNRTG 2 cut(s) 245, 450
SacI GAGCTC 2 cut(s) 504, 631
SaqAI TTAA 4 cut(s) 150, 675, 696, 939
SatI GCNGC 2 cut(s) 66, 204
Sau3AI GATC 8 cut(s) 41, 162, 255, 442, 919, 1072, 1150, 1162
Sau96I GGNCC 4 cut(s) 27, 28, 59, 1021
ScrFI CCNGG 2 cut(s) 39, 903
SduI GDGCHC 6 cut(s) 31, 326, 504, 631, 802, 1275
SfaNI GCATC 1 cut(s) 573
SfcI CTRYAG 1 cut(s) 562
SinI GGWCC 1 cut(s) 59
SmiMI CAYNNNNRTG 2 cut(s) 245, 450
SmlI CTYRAG 2 cut(s) 1124, 1221
SmoI CTYRAG 2 cut(s) 1124, 1221
SnaBI TACGTA 1 cut(s) 612
SphI GCATGC 1 cut(s) 1057
Sse9I AATT 5 cut(s) 147, 182, 988, 998, 1004
SsiI CCGC 2 cut(s) 65, 580
SspI AATATT 2 cut(s) 1041, 1097
SspMI CTAG 2 cut(s) 1298, 1306
SstI GAGCTC 2 cut(s) 504, 631
StyD4I CCNGG 2 cut(s) 37, 901
StyI CCWWGG 1 cut(s) 1028
TaaI ACNGT 4 cut(s) 289, 373, 541, 548
TaiI ACGT 3 cut(s) 10, 614, 790
TaqI TCGA 5 cut(s) 89, 265, 482, 796, 1149
TasI AATT 5 cut(s) 147, 182, 988, 998, 1004
TatI WGTACW 1 cut(s) 1115
TauI GCSGC 1 cut(s) 68
TfiI GAWTC 1 cut(s) 412
Tru1I TTAA 4 cut(s) 150, 675, 696, 939
Tru9I TTAA 4 cut(s) 150, 675, 696, 939
TscAI CASTG 1 cut(s) 476
TseFI GTSAC 1 cut(s) 247
TseI GCWGC 1 cut(s) 203
Tsp45I GTSAC 1 cut(s) 247
TspDTI ATGAA 2 cut(s) 173, 995
TspGWI ACGGA 3 cut(s) 503, 660, 1148
TspRI CASTG 1 cut(s) 476
VpaK11BI GGWCC 1 cut(s) 59
VspI ATTAAT 1 cut(s) 150
XapI RAATTY 3 cut(s) 182, 998, 1004
XceI RCATGY 1 cut(s) 1057
XmiI GTMKAC 1 cut(s) 12
XmnI GAANNNNTTC 1 cut(s) 879
XspI CTAG 2 cut(s) 1298, 1306
Zsp2I ATGCAT 1 cut(s) 980
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.