Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0012709

Physical Location & Seq

Genomic Coordinates Forward (+)

86669251 .. 86673299

Gene Structure 4049 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG647700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 990 bp

ATGGCTTCAGCTGGTCCGGCGGCTCCGGCAGTAGCGCCGGCTTCGAGTGTTGAAAATCCGAATGGTAACAAGGCAAGGTTTGCTGATAAGCTACCGGAGGAAATTAATGAGATGAAGATCAAAGATGAGAAGGAAATAGAAGCAGCTGTGGTGGATGGGAATGGGACTGAAACCGGCCACATTATTGTGACTACGATCGGTGGTCGAAATGGTCAGCCTAAACAGACTGTAAGTTACATGGCAGAGCGTGTTGTTGGGCAGGGCTCATTCGGTATTGTCTTTCAGGCTAAATGCCTTGAAACTGGAGAAACTGTTGCAATCAAGAAGGTTTTGCAGGACAAGAGATACAAGAATCGTGAGTTGCAAACAATGCGCCTTCTTGATCATCCTAATGTTGTTGCACTCAAACACTGCTTCTTTTCGACCACGGATAAAGATGAGCTCTATCTAAATCTGGTGCTTGAATATGTACCTGAGACTGTTTACCGTGTGGCAAAACACTACAGCAAGGCAAATCAGCGGATGCCTATGATTTATGTTAAACTCTATACGTATCAGATTTGCAGAGCTCTGGCATATATTCACGGAGGCATAGGAGTATGCCACAGGGACATTAAGCCACAGAACCTCTTGGTTAATCCCCATACTCATCAAGTCAAGTTGTGTGATTTTGGAAGTGCAAAAGTTCTGGTGAAAGGCGAACCAAATATATCATACATTTGTTCACGTTATTATCGAGCACCTGAACTCATATTTGGGGCAACTGAATACACTACTGCCATTGACATCTGGTCTGTGGGTTGCGTGCTTGCTGAACTGCTTCTTGGACAGCCTCTCTTCCCAGGTGAGAGTGGAGTTGATCAGCTTGTTGAGATTATTAAGGTACTCGGCACCCCAACTCGTGAGGAAATCAAATGCATGAACCCGAATTATACAGAATTCAAATTTCCACAAATCAAGGCCCACCCTTGGCACAAAGTGAGTTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0006972 GO:0008150 GO:0008152 GO:0009628 GO:0009651 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046777 GO:0050896 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko01521 ko04012 ko04062 ko04110 ko04150 ko04151 ko04310 ko04340 ko04341 ko04360 ko04390 ko04510 ko04550 ko04657 ko04660 ko04662 ko04711 ko04722 ko04728 ko04910 ko04916 ko04917 ko04919 ko04931 ko04932 ko04934 ko05010 ko05160 ko05162 ko05164 ko05165 ko05166 ko05167 ko05169 ko05200 ko05210 ko05213 ko05215 ko05217 ko05224 ko05225 ko05226 map01521 map04012 map04062 map04110 map04150 map04151 map04310 map04340 map04341 map04360 map04390 map04510 map04550 map04657 map04660 map04662 map04711 map04722 map04728 map04910 map04916 map04917 map04919 map04931 map04932 map04934 map05010 map05160 map05162 map05164 map05165 map05166 map05167 map05169 map05200 map05210 map05213 map05215 map05217 map05224 map05225 map05226

Pfam Domains

Protein Families

Pkinase

Protein Analysis

329

Amino Acids

36.73

Weight (kDa)

8.3

Isoelectric Point (pI)

30.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	80 - 302	2.4e-55	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	82 - 279	1.3e-25	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012709)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G14640 AT5G14640
fragaria_vesca	FvH4_6g50970 FvH4_6g50970
malus_domestica	MD09G1030000.v1.1
prunus_persica	Prupe.3G287300_v2.0.a1 Prupe.3G287300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0172371
rosa_laevigata	RLG00000022108
rosa_multiflora	Rmu_sc0000467.1_g000008
rosa_roxburghii	Rroxscaffold_2G00079940
rosa_rugosa	Rorug02G0558800 Rorug02G0558800
rosa_samantha	Rh2AG634000 Rh2BG647700 Rh2CG614700 Rh2DG662500
rosa_wichuraiana	Rw2G052510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	890
AciI	CCGC	2 cut(s)	20, 520
AcoI	YGGCCR	1 cut(s)	175
AcsI	RAATTY	2 cut(s)	938, 944
AdeI	CACNNNGTG	1 cut(s)	979
AfaI	GTAC	2 cut(s)	471, 885
AfiI	CCNNNNNNNGG	1 cut(s)	969
AgsI	TTSAA	4 cut(s)	53, 299, 464, 943
AhdI	GACNNNNNGTC	1 cut(s)	790
AjnI	CCWGG	1 cut(s)	841
AjuI	GAANNNNNNNTTGG	4 cut(s)	738, 770, 807, 839
AluBI	AGCT	6 cut(s)	11, 91, 146, 442, 569, 865
AluI	AGCT	6 cut(s)	11, 91, 146, 442, 569, 865
Alw21I	GWGCWC	3 cut(s)	444, 571, 742
Alw26I	GTCTC	1 cut(s)	470
AoxI	GGCC	2 cut(s)	175, 960
ApeKI	GCWGC	1 cut(s)	143
ApoI	RAATTY	2 cut(s)	938, 944
AseI	ATTAAT	1 cut(s)	105
Asp700I	GAANNNNTTC	1 cut(s)	819
AspLEI	GCGC	2 cut(s)	37, 375
AspS9I	GGNCC	2 cut(s)	14, 961
AsuHPI	GGTGA	2 cut(s)	703, 857
AvaII	GGWCC	1 cut(s)	14
BanI	GGYRCC	1 cut(s)	890
BanII	GRGCYC	3 cut(s)	266, 444, 571
BauI	CACGAG	1 cut(s)	900
Bbv12I	GWGCWC	3 cut(s)	444, 571, 742
BbvI	GCAGC	1 cut(s)	155
BccI	CCATC	1 cut(s)	149
BciT130I	CCWGG	1 cut(s)	843
BclI	TGATCA	2 cut(s)	382, 859
BcoDI	GTCTC	1 cut(s)	470
BfaI	CTAG	1 cut(s)	988
BfmI	CTRYAG	1 cut(s)	502
BfoI	RGCGCY	1 cut(s)	38
BisI	GCNGC	2 cut(s)	21, 144
BlsI	GCNGC	2 cut(s)	22, 145
Bme1390I	CCNGG	1 cut(s)	843
Bme18I	GGWCC	1 cut(s)	14
BmeRI	GACNNNNNGTC	1 cut(s)	790
BmgT120I	GGNCC	2 cut(s)	14, 961
BmiI	GGNNCC	2 cut(s)	24, 892
BmrFI	CCNGG	1 cut(s)	843
BmsI	GCATC	1 cut(s)	513
BpmI	CTGGAG	1 cut(s)	324
BsaAI	YACGTR	1 cut(s)	552
BsaBI	GATNNNNATC	1 cut(s)	116
BsaJI	CCNNGG	3 cut(s)	426, 841, 968
BsaWI	WCCGGW	1 cut(s)	94
BsaXI	ACNNNNNCTCC	2 cut(s)	297, 327
Bsc4I	CCNNNNNNNGG	1 cut(s)	969
Bse118I	RCCGGY	2 cut(s)	37, 173
Bse1I	ACTGG	1 cut(s)	307
Bse8I	GATNNNNATC	1 cut(s)	116
BseBI	CCWGG	1 cut(s)	843
BseDI	CCNNGG	3 cut(s)	426, 841, 968
BseGI	GGATG	3 cut(s)	160, 385, 528
BseJI	GATNNNNATC	1 cut(s)	116
BseLI	CCNNNNNNNGG	1 cut(s)	969
BseMII	CTCAG	1 cut(s)	465
BseNI	ACTGG	1 cut(s)	307
BseXI	GCAGC	1 cut(s)	155
Bsh1285I	CGRYCG	1 cut(s)	198
BshFI	GGCC	2 cut(s)	177, 962
BshNI	GGYRCC	1 cut(s)	890
BsiEI	CGRYCG	1 cut(s)	198
BsiHKAI	GWGCWC	3 cut(s)	444, 571, 742
BsiSI	CCGG	5 cut(s)	17, 26, 38, 95, 174
BslFI	GGGAC	2 cut(s)	178, 623
BslI	CCNNNNNNNGG	1 cut(s)	969
BsmAI	GTCTC	1 cut(s)	470
BsmFI	GGGAC	2 cut(s)	178, 623
BsnI	GGCC	2 cut(s)	177, 962
Bsp1286I	GDGCHC	4 cut(s)	266, 444, 571, 742
Bsp143I	GATC	4 cut(s)	117, 195, 382, 859
BspACI	CCGC	2 cut(s)	20, 520
BspANI	GGCC	2 cut(s)	177, 962
BspCNI	CTCAG	1 cut(s)	466
BspLI	GGNNCC	2 cut(s)	24, 892
BspT107I	GGYRCC	1 cut(s)	890
BsrFI	RCCGGY	2 cut(s)	37, 173
BsrI	ACTGG	1 cut(s)	307
BssAI	RCCGGY	2 cut(s)	37, 173
BssECI	CCNNGG	3 cut(s)	426, 841, 968
BssMI	GATC	4 cut(s)	117, 195, 382, 859
BssSI	CACGAG	1 cut(s)	900
BssT1I	CCWWGG	1 cut(s)	968
Bst2BI	CACGAG	1 cut(s)	900
Bst2UI	CCWGG	1 cut(s)	843
Bst4CI	ACNGT	4 cut(s)	229, 313, 481, 488
Bst6I	CTCTTC	1 cut(s)	842
BstAPI	GCANNNNNTGC	2 cut(s)	80, 370
BstBAI	YACGTR	1 cut(s)	552
BstC8I	GCNNGC	3 cut(s)	39, 806, 810
BstDEI	CTNAG	1 cut(s)	474
BstDSI	CCRYGG	1 cut(s)	426
BstF5I	GGATG	3 cut(s)	160, 385, 528
BstH2I	RGCGCY	1 cut(s)	38
BstHHI	GCGC	2 cut(s)	37, 375
BstKTI	GATC	4 cut(s)	120, 198, 385, 862
BstMAI	GTCTC	1 cut(s)	470
BstMBI	GATC	4 cut(s)	117, 195, 382, 859
BstMCI	CGRYCG	1 cut(s)	198
BstMWI	GCNNNNNNNGC	4 cut(s)	17, 26, 80, 370
BstNI	CCWGG	1 cut(s)	843
BstSCI	CCNGG	1 cut(s)	841
BstSFI	CTRYAG	1 cut(s)	502
BstSNI	TACGTA	1 cut(s)	552
BstV1I	GCAGC	1 cut(s)	155
BsuRI	GGCC	2 cut(s)	177, 962
BtgI	CCRYGG	1 cut(s)	426
BtsCI	GGATG	3 cut(s)	160, 385, 528
BtsI	GCAGTG	1 cut(s)	409
BtsIMutI	CAGTG	1 cut(s)	409
Cac8I	GCNNGC	3 cut(s)	39, 806, 810
CfoI	GCGC	2 cut(s)	37, 375
Cfr10I	RCCGGY	2 cut(s)	37, 173
Cfr13I	GGNCC	2 cut(s)	14, 961
Csp6I	GTAC	2 cut(s)	470, 884
CviAII	CATG	2 cut(s)	238, 919
CviQI	GTAC	2 cut(s)	470, 884
DdeI	CTNAG	1 cut(s)	474
DpnI	GATC	4 cut(s)	119, 197, 384, 861
DpnII	GATC	4 cut(s)	117, 195, 382, 859
DraIII	CACNNNGTG	1 cut(s)	979
DriI	GACNNNNNGTC	1 cut(s)	790
EaeI	YGGCCR	1 cut(s)	175
Eam1104I	CTCTTC	1 cut(s)	842
Eam1105I	GACNNNNNGTC	1 cut(s)	790
EarI	CTCTTC	1 cut(s)	842
Ecl136II	GAGCTC	2 cut(s)	442, 569
Eco105I	TACGTA	1 cut(s)	552
Eco130I	CCWWGG	1 cut(s)	968
Eco24I	GRGCYC	3 cut(s)	266, 444, 571
Eco47I	GGWCC	1 cut(s)	14
Eco53kI	GAGCTC	2 cut(s)	442, 569
EcoICRI	GAGCTC	2 cut(s)	442, 569
EcoRI	GAATTC	1 cut(s)	938
EcoRII	CCWGG	1 cut(s)	841
EcoT14I	CCWWGG	1 cut(s)	968
EcoT22I	ATGCAT	1 cut(s)	920
EcoT38I	GRGCYC	3 cut(s)	266, 444, 571
ErhI	CCWWGG	1 cut(s)	968
FaeI	CATG	2 cut(s)	241, 922
FaqI	GGGAC	2 cut(s)	178, 623
FatI	CATG	2 cut(s)	237, 918
FbaI	TGATCA	2 cut(s)	382, 859
Fnu4HI	GCNGC	2 cut(s)	21, 144
FokI	GGATG	3 cut(s)	167, 372, 535
FriOI	GRGCYC	3 cut(s)	266, 444, 571
Fsp4HI	GCNGC	2 cut(s)	21, 144
FspBI	CTAG	1 cut(s)	988
GlaI	GCGC	2 cut(s)	36, 374
GluI	GCNGC	2 cut(s)	21, 144
GsuI	CTGGAG	1 cut(s)	324
HaeII	RGCGCY	1 cut(s)	38
HaeIII	GGCC	2 cut(s)	177, 962
HapII	CCGG	5 cut(s)	17, 26, 38, 95, 174
HhaI	GCGC	2 cut(s)	37, 375
Hin1II	CATG	2 cut(s)	241, 922
Hin6I	GCGC	2 cut(s)	35, 373
HinP1I	GCGC	2 cut(s)	35, 373
HinfI	GANTC	1 cut(s)	352
HpaII	CCGG	5 cut(s)	17, 26, 38, 95, 174
HphI	GGTGA	2 cut(s)	703, 857
Hpy166II	GTNNAC	2 cut(s)	484, 725
Hpy188I	TCNGA	2 cut(s)	60, 558
Hpy188III	TCNNGA	4 cut(s)	322, 356, 380, 902
Hpy8I	GTNNAC	2 cut(s)	484, 725
HpyAV	CCTTC	3 cut(s)	124, 319, 386
HpyCH4III	ACNGT	4 cut(s)	229, 313, 481, 488
HpyCH4IV	ACGT	2 cut(s)	551, 727
HpyCH4V	TGCA	7 cut(s)	317, 334, 364, 401, 564, 680, 918
HpyF10VI	GCNNNNNNNGC	4 cut(s)	17, 26, 80, 370
HpyF3I	CTNAG	1 cut(s)	474
HpySE526I	ACGT	2 cut(s)	551, 727
Hsp92II	CATG	2 cut(s)	241, 922
HspAI	GCGC	2 cut(s)	35, 373
KroI	GCCGGC	1 cut(s)	37
KroNI	GCCGGC	1 cut(s)	39
Ksp22I	TGATCA	2 cut(s)	382, 859
Kzo9I	GATC	4 cut(s)	117, 195, 382, 859
LmnI	GCTCC	1 cut(s)	28
Lsp1109I	GCAGC	1 cut(s)	155
LweI	GCATC	1 cut(s)	513
MaeI	CTAG	1 cut(s)	988
MaeII	ACGT	2 cut(s)	551, 727
MaeIII	GTNAC	3 cut(s)	65, 187, 233
MalI	GATC	4 cut(s)	119, 197, 384, 861
MboI	GATC	4 cut(s)	117, 195, 382, 859
MboII	GAAGA	2 cut(s)	127, 829
MhlI	GDGCHC	4 cut(s)	266, 444, 571, 742
MluCI	AATT	4 cut(s)	102, 928, 938, 944
MnlI	CCTC	5 cut(s)	91, 581, 638, 843, 898
Mph1103I	ATGCAT	1 cut(s)	920
MroNI	GCCGGC	1 cut(s)	37
MroXI	GAANNNNTTC	1 cut(s)	819
MseI	TTAA	5 cut(s)	105, 540, 615, 636, 879
MslI	CAYNNNNRTG	2 cut(s)	185, 390
MspA1I	CMGCKG	3 cut(s)	11, 146, 520
MspI	CCGG	5 cut(s)	17, 26, 38, 95, 174
MspR9I	CCNGG	1 cut(s)	843
MvaI	CCWGG	1 cut(s)	843
MwoI	GCNNNNNNNGC	4 cut(s)	17, 26, 80, 370
NaeI	GCCGGC	1 cut(s)	39
NdeII	GATC	4 cut(s)	117, 195, 382, 859
NgoMIV	GCCGGC	1 cut(s)	37
NlaIII	CATG	2 cut(s)	241, 922
NlaIV	GGNNCC	2 cut(s)	24, 892
NmeAIII	GCCGAG	1 cut(s)	867
NmuCI	GTSAC	1 cut(s)	187
NsiI	ATGCAT	1 cut(s)	920
PcsI	WCGNNNNNNNCGW	1 cut(s)	733
PdiI	GCCGGC	1 cut(s)	39
PdmI	GAANNNNTTC	1 cut(s)	819
PfeI	GAWTC	1 cut(s)	352
PkrI	GCNGC	2 cut(s)	22, 145
Ple19I	CGATCG	1 cut(s)	198
Ppu21I	YACGTR	1 cut(s)	552
PshBI	ATTAAT	1 cut(s)	105
Psp124BI	GAGCTC	2 cut(s)	444, 571
Psp6I	CCWGG	1 cut(s)	841
PspGI	CCWGG	1 cut(s)	841
PspN4I	GGNNCC	2 cut(s)	24, 892
PspPI	GGNCC	2 cut(s)	14, 961
PvuI	CGATCG	1 cut(s)	198
PvuII	CAGCTG	2 cut(s)	11, 146
RsaI	GTAC	2 cut(s)	471, 885
RsaNI	GTAC	2 cut(s)	470, 884
RseI	CAYNNNNRTG	2 cut(s)	185, 390
SacI	GAGCTC	2 cut(s)	444, 571
SaqAI	TTAA	5 cut(s)	105, 540, 615, 636, 879
SatI	GCNGC	2 cut(s)	21, 144
Sau3AI	GATC	4 cut(s)	117, 195, 382, 859
Sau96I	GGNCC	2 cut(s)	14, 961
ScrFI	CCNGG	1 cut(s)	843
SduI	GDGCHC	4 cut(s)	266, 444, 571, 742
SfaNI	GCATC	1 cut(s)	513
SfcI	CTRYAG	1 cut(s)	502
SinI	GGWCC	1 cut(s)	14
SmiMI	CAYNNNNRTG	2 cut(s)	185, 390
SnaBI	TACGTA	1 cut(s)	552
Sse9I	AATT	4 cut(s)	102, 928, 938, 944
SsiI	CCGC	2 cut(s)	20, 520
SspMI	CTAG	1 cut(s)	988
SstI	GAGCTC	2 cut(s)	444, 571
StyD4I	CCNGG	1 cut(s)	841
StyI	CCWWGG	1 cut(s)	968
TaaI	ACNGT	4 cut(s)	229, 313, 481, 488
TaiI	ACGT	2 cut(s)	554, 730
TaqI	TCGA	4 cut(s)	44, 205, 422, 736
TasI	AATT	4 cut(s)	102, 928, 938, 944
TauI	GCSGC	1 cut(s)	23
TfiI	GAWTC	1 cut(s)	352
Tru1I	TTAA	5 cut(s)	105, 540, 615, 636, 879
Tru9I	TTAA	5 cut(s)	105, 540, 615, 636, 879
TscAI	CASTG	1 cut(s)	416
TseFI	GTSAC	1 cut(s)	187
TseI	GCWGC	1 cut(s)	143
Tsp45I	GTSAC	1 cut(s)	187
TspDTI	ATGAA	2 cut(s)	128, 935
TspGWI	ACGGA	2 cut(s)	443, 600
TspRI	CASTG	1 cut(s)	416
VpaK11BI	GGWCC	1 cut(s)	14
VspI	ATTAAT	1 cut(s)	105
XapI	RAATTY	2 cut(s)	938, 944
XmnI	GAANNNNTTC	1 cut(s)	819
XspI	CTAG	1 cut(s)	988
Zsp2I	ATGCAT	1 cut(s)	920

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.