Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0012709

Physical Location & Seq

Genomic Coordinates Forward (+)

85978205 .. 85980211

Gene Structure 2007 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG634000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 879 bp

ATGCGCCTTCTTGATCATCCTAATGTTGTTGCACTCAAACACTGCTTCTTTTCGACCACGGATAAAGATGAGCTCTATCTAAATCTGGTGCTTGAATATGTACCTGAGACTGTTTACCGTGTGGCAAAACACTACAGCAAGGCAAATCAGCGGATGCCTATGATTTATGTTAAACTCTATACGTATCAGATTTGCAGAGCTCTGGCATATATTCACGGAGGCATAGGAGTATGCCACAGGGACATTAAGCCACAGAACCTCTTGGTTAATCCCCATACTCATCAAGTCAAGTTGTGTGATTTTGGAAGTGCAAAAGTTCTGGTGAAAGGCGAACCAAATATATCATACATTTGTTCACGTTATTATCGAGCACCTGAACTCATATTTGGGGCAACTGAATACACTACTGCCATTGACATCTGGTCTGTGGGTTGCGTGCTTGCTGAACTGCTTCTTGGACAGCCTCTCTTCCCAGGTGAGAGTGGAGTTGATCAGCTTGTTGAGATTATTAAGGTACTCGGCACCCCAACTCGTGAGGAAATCAAATGCATGAACCCGAATTATACAGAATTCAAATTTCCACAAATCAAGGCCCACCCTTGGCACAAAATATTCCATAAGCGCATGCCCCCAGAAGCAGTAGATCTTGTGTCAAGACTTCTTCAATATTCTCCCAGCCTAAGGTGTACTGCTCTTGAGGCTTGTGTCCACCCATTCTTCGATCAACTCCGTGATCCTAATACTCGTCTCCCTAATGGACGACCTTTGCCTCCTCTCTTCAACTTCAAGCCTCAAGAGCTGAAGGGGGCAACTATTGAGCTTTTATCCAGACTGATACCTGAGCACGCGAGAAAGCAATGTGCCTTTCTAGGTACCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0006972 GO:0008150 GO:0008152 GO:0009628 GO:0009651 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046777 GO:0050896 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko01521 ko04012 ko04062 ko04110 ko04150 ko04151 ko04310 ko04340 ko04341 ko04360 ko04390 ko04510 ko04550 ko04657 ko04660 ko04662 ko04711 ko04722 ko04728 ko04910 ko04916 ko04917 ko04919 ko04931 ko04932 ko04934 ko05010 ko05160 ko05162 ko05164 ko05165 ko05166 ko05167 ko05169 ko05200 ko05210 ko05213 ko05215 ko05217 ko05224 ko05225 ko05226 map01521 map04012 map04062 map04110 map04150 map04151 map04310 map04340 map04341 map04360 map04390 map04510 map04550 map04657 map04660 map04662 map04711 map04722 map04728 map04910 map04916 map04917 map04919 map04931 map04932 map04934 map05010 map05160 map05162 map05164 map05165 map05166 map05167 map05169 map05200 map05210 map05213 map05215 map05217 map05224 map05225 map05226

Pfam Domains

Protein Families

Pkinase

Protein Analysis

292

Amino Acids

33.42

Weight (kDa)

8.83

Isoelectric Point (pI)

35.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	1 - 240	7.4e-51	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	1 - 159	2.4e-17	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012709)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G14640 AT5G14640
fragaria_vesca	FvH4_6g50970 FvH4_6g50970
malus_domestica	MD09G1030000.v1.1
prunus_persica	Prupe.3G287300_v2.0.a1 Prupe.3G287300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0172371
rosa_laevigata	RLG00000022108
rosa_multiflora	Rmu_sc0000467.1_g000008
rosa_roxburghii	Rroxscaffold_2G00079940
rosa_rugosa	Rorug02G0558800 Rorug02G0558800
rosa_samantha	Rh2AG634000 Rh2BG647700 Rh2CG614700 Rh2DG662500
rosa_wichuraiana	Rw2G052510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	872
AccB1I	GGYRCC	2 cut(s)	521, 872
AccII	CGCG	1 cut(s)	848
AciI	CCGC	1 cut(s)	151
AclWI	GGATC	1 cut(s)	728
AcsI	RAATTY	2 cut(s)	569, 575
AcuI	CTGAAG	1 cut(s)	821
AfaI	GTAC	4 cut(s)	102, 516, 688, 874
AfiI	CCNNNNNNNGG	2 cut(s)	600, 681
AgsI	TTSAA	5 cut(s)	95, 574, 665, 781, 787
AhdI	GACNNNNNGTC	1 cut(s)	421
AjnI	CCWGG	1 cut(s)	472
AjuI	GAANNNNNNNTTGG	4 cut(s)	369, 401, 438, 470
AluBI	AGCT	5 cut(s)	73, 200, 496, 799, 820
AluI	AGCT	5 cut(s)	73, 200, 496, 799, 820
Alw21I	GWGCWC	4 cut(s)	75, 202, 373, 846
Alw26I	GTCTC	2 cut(s)	101, 752
AlwI	GGATC	1 cut(s)	728
AoxI	GGCC	1 cut(s)	591
ApoI	RAATTY	2 cut(s)	569, 575
Asp700I	GAANNNNTTC	1 cut(s)	450
Asp718I	GGTACC	1 cut(s)	872
AspLEI	GCGC	2 cut(s)	6, 624
AspS9I	GGNCC	1 cut(s)	592
AsuHPI	GGTGA	2 cut(s)	334, 488
AxyI	CCTNAGG	1 cut(s)	680
BanI	GGYRCC	2 cut(s)	521, 872
BanII	GRGCYC	2 cut(s)	75, 202
BauI	CACGAG	1 cut(s)	531
Bbv12I	GWGCWC	4 cut(s)	75, 202, 373, 846
BciT130I	CCWGG	1 cut(s)	474
BclI	TGATCA	2 cut(s)	13, 490
BcoDI	GTCTC	2 cut(s)	101, 752
BfaI	CTAG	2 cut(s)	869, 877
BfmI	CTRYAG	1 cut(s)	133
BglII	AGATCT	1 cut(s)	643
Bme1390I	CCNGG	1 cut(s)	474
BmeRI	GACNNNNNGTC	1 cut(s)	421
BmgT120I	GGNCC	1 cut(s)	592
BmiI	GGNNCC	2 cut(s)	523, 874
BmrFI	CCNGG	1 cut(s)	474
BmsI	GCATC	1 cut(s)	144
Bpu10I	CCTNAGC	1 cut(s)	840
BpuEI	CTTGAG	2 cut(s)	716, 777
BsaAI	YACGTR	1 cut(s)	183
BsaJI	CCNNGG	3 cut(s)	57, 472, 599
Bsc4I	CCNNNNNNNGG	2 cut(s)	600, 681
Bse21I	CCTNAGG	1 cut(s)	680
Bse3DI	GCAATG	1 cut(s)	863
BseBI	CCWGG	1 cut(s)	474
BseDI	CCNNGG	3 cut(s)	57, 472, 599
BseGI	GGATG	2 cut(s)	16, 159
BseLI	CCNNNNNNNGG	2 cut(s)	600, 681
BseMI	GCAATG	1 cut(s)	863
BseMII	CTCAG	2 cut(s)	96, 831
BseRI	GAGGAG	1 cut(s)	762
BseYI	CCCAGC	1 cut(s)	674
Bsh1236I	CGCG	1 cut(s)	848
BshFI	GGCC	1 cut(s)	593
BshNI	GGYRCC	2 cut(s)	521, 872
BsiHKAI	GWGCWC	4 cut(s)	75, 202, 373, 846
BslFI	GGGAC	1 cut(s)	254
BslI	CCNNNNNNNGG	2 cut(s)	600, 681
BsmAI	GTCTC	2 cut(s)	101, 752
BsmBI	CGTCTC	1 cut(s)	752
BsmFI	GGGAC	1 cut(s)	254
BsnI	GGCC	1 cut(s)	593
Bsp1286I	GDGCHC	4 cut(s)	75, 202, 373, 846
Bsp143I	GATC	5 cut(s)	13, 490, 643, 721, 733
BspACI	CCGC	1 cut(s)	151
BspANI	GGCC	1 cut(s)	593
BspCNI	CTCAG	2 cut(s)	97, 832
BspFNI	CGCG	1 cut(s)	848
BspLI	GGNNCC	2 cut(s)	523, 874
BspPI	GGATC	1 cut(s)	728
BspT107I	GGYRCC	2 cut(s)	521, 872
BsrDI	GCAATG	1 cut(s)	863
BssECI	CCNNGG	3 cut(s)	57, 472, 599
BssMI	GATC	5 cut(s)	13, 490, 643, 721, 733
BssSI	CACGAG	1 cut(s)	531
BssT1I	CCWWGG	1 cut(s)	599
Bst2BI	CACGAG	1 cut(s)	531
Bst2UI	CCWGG	1 cut(s)	474
Bst4CI	ACNGT	2 cut(s)	112, 119
Bst6I	CTCTTC	2 cut(s)	473, 782
BstBAI	YACGTR	1 cut(s)	183
BstC8I	GCNNGC	4 cut(s)	437, 441, 626, 846
BstDEI	CTNAG	3 cut(s)	105, 680, 840
BstDSI	CCRYGG	1 cut(s)	57
BstF5I	GGATG	2 cut(s)	16, 159
BstFNI	CGCG	1 cut(s)	848
BstHHI	GCGC	2 cut(s)	6, 624
BstKTI	GATC	5 cut(s)	16, 493, 646, 724, 736
BstMAI	GTCTC	2 cut(s)	101, 752
BstMBI	GATC	5 cut(s)	13, 490, 643, 721, 733
BstMWI	GCNNNNNNNGC	2 cut(s)	698, 796
BstNI	CCWGG	1 cut(s)	474
BstNSI	RCATGY	1 cut(s)	628
BstSCI	CCNGG	1 cut(s)	472
BstSFI	CTRYAG	1 cut(s)	133
BstSNI	TACGTA	1 cut(s)	183
BstUI	CGCG	1 cut(s)	848
BstX2I	RGATCY	1 cut(s)	643
BstYI	RGATCY	1 cut(s)	643
Bsu36I	CCTNAGG	1 cut(s)	680
BsuRI	GGCC	1 cut(s)	593
BtgI	CCRYGG	1 cut(s)	57
BtsCI	GGATG	2 cut(s)	16, 159
BtsI	GCAGTG	1 cut(s)	40
BtsIMutI	CAGTG	1 cut(s)	40
Cac8I	GCNNGC	4 cut(s)	437, 441, 626, 846
CfoI	GCGC	2 cut(s)	6, 624
Cfr13I	GGNCC	1 cut(s)	592
Csp6I	GTAC	4 cut(s)	101, 515, 687, 873
CviAII	CATG	2 cut(s)	550, 625
CviQI	GTAC	4 cut(s)	101, 515, 687, 873
DdeI	CTNAG	3 cut(s)	105, 680, 840
DpnI	GATC	5 cut(s)	15, 492, 645, 723, 735
DpnII	GATC	5 cut(s)	13, 490, 643, 721, 733
DriI	GACNNNNNGTC	1 cut(s)	421
Eam1104I	CTCTTC	2 cut(s)	473, 782
Eam1105I	GACNNNNNGTC	1 cut(s)	421
EarI	CTCTTC	2 cut(s)	473, 782
Ecl136II	GAGCTC	2 cut(s)	73, 200
Eco105I	TACGTA	1 cut(s)	183
Eco130I	CCWWGG	1 cut(s)	599
Eco24I	GRGCYC	2 cut(s)	75, 202
Eco53kI	GAGCTC	2 cut(s)	73, 200
Eco57I	CTGAAG	1 cut(s)	821
Eco81I	CCTNAGG	1 cut(s)	680
EcoICRI	GAGCTC	2 cut(s)	73, 200
EcoRI	GAATTC	1 cut(s)	569
EcoRII	CCWGG	1 cut(s)	472
EcoT14I	CCWWGG	1 cut(s)	599
EcoT22I	ATGCAT	1 cut(s)	551
EcoT38I	GRGCYC	2 cut(s)	75, 202
ErhI	CCWWGG	1 cut(s)	599
Esp3I	CGTCTC	1 cut(s)	752
FaeI	CATG	2 cut(s)	553, 628
FaqI	GGGAC	1 cut(s)	254
FatI	CATG	2 cut(s)	549, 624
FbaI	TGATCA	2 cut(s)	13, 490
FokI	GGATG	2 cut(s)	3, 166
FriOI	GRGCYC	2 cut(s)	75, 202
FspBI	CTAG	2 cut(s)	869, 877
GlaI	GCGC	2 cut(s)	5, 623
GsaI	CCCAGC	1 cut(s)	678
HaeIII	GGCC	1 cut(s)	593
HhaI	GCGC	2 cut(s)	6, 624
Hin1II	CATG	2 cut(s)	553, 628
Hin6I	GCGC	2 cut(s)	4, 622
HinP1I	GCGC	2 cut(s)	4, 622
HphI	GGTGA	2 cut(s)	334, 488
Hpy166II	GTNNAC	4 cut(s)	115, 356, 687, 709
Hpy188I	TCNGA	1 cut(s)	189
Hpy188III	TCNNGA	6 cut(s)	11, 533, 654, 695, 794, 828
Hpy8I	GTNNAC	4 cut(s)	115, 356, 687, 709
HpyAV	CCTTC	2 cut(s)	17, 796
HpyCH4III	ACNGT	2 cut(s)	112, 119
HpyCH4IV	ACGT	2 cut(s)	182, 358
HpyCH4V	TGCA	4 cut(s)	32, 195, 311, 549
HpyF10VI	GCNNNNNNNGC	2 cut(s)	698, 796
HpyF3I	CTNAG	3 cut(s)	105, 680, 840
HpySE526I	ACGT	2 cut(s)	182, 358
Hsp92II	CATG	2 cut(s)	553, 628
HspAI	GCGC	2 cut(s)	4, 622
KpnI	GGTACC	1 cut(s)	876
Ksp22I	TGATCA	2 cut(s)	13, 490
Kzo9I	GATC	5 cut(s)	13, 490, 643, 721, 733
LweI	GCATC	1 cut(s)	144
MaeI	CTAG	2 cut(s)	869, 877
MaeII	ACGT	2 cut(s)	182, 358
MalI	GATC	5 cut(s)	15, 492, 645, 723, 735
MboI	GATC	5 cut(s)	13, 490, 643, 721, 733
MboII	GAAGA	4 cut(s)	460, 653, 709, 769
MflI	RGATCY	1 cut(s)	643
MhlI	GDGCHC	4 cut(s)	75, 202, 373, 846
MluCI	AATT	3 cut(s)	559, 569, 575
MnlI	CCTC	8 cut(s)	212, 269, 474, 529, 691, 780, 783, 801
Mph1103I	ATGCAT	1 cut(s)	551
MroXI	GAANNNNTTC	1 cut(s)	450
MseI	TTAA	4 cut(s)	171, 246, 267, 510
MslI	CAYNNNNRTG	1 cut(s)	21
MspA1I	CMGCKG	1 cut(s)	151
MspR9I	CCNGG	1 cut(s)	474
MvaI	CCWGG	1 cut(s)	474
MvnI	CGCG	1 cut(s)	848
MwoI	GCNNNNNNNGC	2 cut(s)	698, 796
NdeII	GATC	5 cut(s)	13, 490, 643, 721, 733
NlaIII	CATG	2 cut(s)	553, 628
NlaIV	GGNNCC	2 cut(s)	523, 874
NmeAIII	GCCGAG	1 cut(s)	498
NsiI	ATGCAT	1 cut(s)	551
NspI	RCATGY	1 cut(s)	628
PaeI	GCATGC	1 cut(s)	628
PcsI	WCGNNNNNNNCGW	1 cut(s)	364
PdmI	GAANNNNTTC	1 cut(s)	450
Ppu21I	YACGTR	1 cut(s)	183
Psp124BI	GAGCTC	2 cut(s)	75, 202
Psp6I	CCWGG	1 cut(s)	472
PspFI	CCCAGC	1 cut(s)	674
PspGI	CCWGG	1 cut(s)	472
PspN4I	GGNNCC	2 cut(s)	523, 874
PspPI	GGNCC	1 cut(s)	592
PsuI	RGATCY	1 cut(s)	643
RsaI	GTAC	4 cut(s)	102, 516, 688, 874
RsaNI	GTAC	4 cut(s)	101, 515, 687, 873
RseI	CAYNNNNRTG	1 cut(s)	21
SacI	GAGCTC	2 cut(s)	75, 202
SaqAI	TTAA	4 cut(s)	171, 246, 267, 510
Sau3AI	GATC	5 cut(s)	13, 490, 643, 721, 733
Sau96I	GGNCC	1 cut(s)	592
ScrFI	CCNGG	1 cut(s)	474
SduI	GDGCHC	4 cut(s)	75, 202, 373, 846
SfaNI	GCATC	1 cut(s)	144
SfcI	CTRYAG	1 cut(s)	133
SmiMI	CAYNNNNRTG	1 cut(s)	21
SmlI	CTYRAG	2 cut(s)	695, 792
SmoI	CTYRAG	2 cut(s)	695, 792
SnaBI	TACGTA	1 cut(s)	183
SphI	GCATGC	1 cut(s)	628
Sse9I	AATT	3 cut(s)	559, 569, 575
SsiI	CCGC	1 cut(s)	151
SspI	AATATT	2 cut(s)	612, 668
SspMI	CTAG	2 cut(s)	869, 877
SstI	GAGCTC	2 cut(s)	75, 202
StyD4I	CCNGG	1 cut(s)	472
StyI	CCWWGG	1 cut(s)	599
TaaI	ACNGT	2 cut(s)	112, 119
TaiI	ACGT	2 cut(s)	185, 361
TaqI	TCGA	3 cut(s)	53, 367, 720
TasI	AATT	3 cut(s)	559, 569, 575
TatI	WGTACW	1 cut(s)	686
Tru1I	TTAA	4 cut(s)	171, 246, 267, 510
Tru9I	TTAA	4 cut(s)	171, 246, 267, 510
TscAI	CASTG	1 cut(s)	47
TspDTI	ATGAA	1 cut(s)	566
TspGWI	ACGGA	3 cut(s)	74, 231, 719
TspRI	CASTG	1 cut(s)	47
XapI	RAATTY	2 cut(s)	569, 575
XceI	RCATGY	1 cut(s)	628
XmnI	GAANNNNTTC	1 cut(s)	450
XspI	CTAG	2 cut(s)	869, 877
Zsp2I	ATGCAT	1 cut(s)	551

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.