FvH4_6g51300

LOB domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0013925
Physical Location & Seq
Forward (+)
38040643 .. 38042826
2184 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g51300.t1

Sequence Viewer

Length: 480 bp
ATGGCTTCGTCTAGTAGTTACTCATCATCATCCTGCAATTCTCCATGTGCTGCGTGCAAGTTTTTGAGGAGAAAATGCATGCCGGATTGTGTGTTCGCTCCCTACTTCCCACCGGAGGAGCCGCACAAGTTTGCCAACGTTCACAAGATATTTGGGGCAAGCAATGTTAGTAAGCTTCTCAACGAAGTGCTCCCTCATCAGAGAGAAGATGCAGTGAACTCTCTTGCCTACGAGGCCGAGGCAAGAATCAAAGATCCGGTGTACGGCTGCGTTGGAGCTATCTCAGTCCTGCAGAGGCAAGTCCTTCGACTTCAGAAGGAACTCGACGCCACTAATGCCGATCTCCTCCGTTATGCCGGCGCTAGCTGTAACCGTGGAACTGGAAGAGGGTCTCATCATGTTGGTCAAAATCCGGGTTTGTATAGCTTCTCTTCTCCATGGAGTACTACTGATGACCCTTATGGAGATCATAGAAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOB

Protein Analysis

160

Amino Acids

17.44

Weight (kDa)

8.17

Isoelectric Point (pI)

52.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOB PF03195 15 - 112 6.3e-42 Lateral organ boundaries (LOB) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013925)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G27650
fragaria_vesca FvH4_6g51300 FvH4_6g51300 FvH4_6g51300
malus_domestica MD17G1029300.v1.1
prunus_persica Prupe.3G290800_v2.0.a1
pyrus_communis pycom17g02650
rosa_chinensis RchiOBHm_Chr2g0172921
rosa_laevigata RLG00000022142
rosa_multiflora Rmu_sc0009727.1_g000002
rosa_roxburghii Rroxscaffold_2G00079420
rosa_rugosa Rorug02G0563600
rosa_samantha Rh2AG640400 Rh2BG653900 Rh2CG619500 Rh2DG667500
rosa_wichuraiana Rw2G052860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 122
AclI AACGTT 1 cut(s) 138
AclWI GGATC 1 cut(s) 248
AcuI CTGAAG 1 cut(s) 296
AcyI GRCGYC 1 cut(s) 327
AfaI GTAC 2 cut(s) 263, 445
AfiI CCNNNNNNNGG 2 cut(s) 115, 263
AloI GAACNNNNNNTCC 2 cut(s) 77, 109
AluBI AGCT 4 cut(s) 175, 278, 366, 426
AluI AGCT 4 cut(s) 175, 278, 366, 426
Alw21I GWGCWC 1 cut(s) 192
Alw26I GTCTC 1 cut(s) 396
AlwI GGATC 1 cut(s) 248
AoxI GGCC 1 cut(s) 234
ApeKI GCWGC 2 cut(s) 50, 267
AspLEI GCGC 1 cut(s) 362
AsuC2I CCSGG 1 cut(s) 414
AsuNHI GCTAGC 1 cut(s) 362
Bbv12I GWGCWC 1 cut(s) 192
BbvI GCAGC 2 cut(s) 37, 254
BceAI ACGGC 1 cut(s) 280
BcgI CGANNNNNNTGC 2 cut(s) 287, 321
BcnI CCSGG 1 cut(s) 414
BcoDI GTCTC 1 cut(s) 396
BfaI CTAG 2 cut(s) 12, 363
BfmI CTRYAG 1 cut(s) 290
BfoI RGCGCY 1 cut(s) 363
BglI GCCNNNNNGGC 1 cut(s) 233
BisI GCNGC 3 cut(s) 51, 122, 268
BlsI GCNGC 3 cut(s) 52, 123, 269
BmcAI AGTACT 1 cut(s) 445
Bme1390I CCNGG 1 cut(s) 414
BmiI GGNNCC 1 cut(s) 120
BmrFI CCNGG 1 cut(s) 414
BmsI GCATC 1 cut(s) 199
BmtI GCTAGC 1 cut(s) 366
BpuMI CCSGG 1 cut(s) 414
BsaHI GRCGYC 1 cut(s) 327
BsaI GGTCTC 1 cut(s) 396
BsaJI CCNNGG 3 cut(s) 237, 373, 437
BsaWI WCCGGW 2 cut(s) 112, 256
Bsc4I CCNNNNNNNGG 2 cut(s) 115, 263
Bse118I RCCGGY 1 cut(s) 356
Bse1I ACTGG 1 cut(s) 385
Bse3DI GCAATG 1 cut(s) 169
BseDI CCNNGG 3 cut(s) 237, 373, 437
BseGI GGATG 1 cut(s) 29
BseLI CCNNNNNNNGG 2 cut(s) 115, 263
BseMI GCAATG 1 cut(s) 169
BseMII CTCAG 1 cut(s) 297
BseNI ACTGG 1 cut(s) 385
BseRI GAGGAG 3 cut(s) 82, 131, 335
BseXI GCAGC 2 cut(s) 37, 254
BshFI GGCC 1 cut(s) 236
BsiHKAI GWGCWC 1 cut(s) 192
BsiSI CCGG 5 cut(s) 83, 113, 257, 357, 413
BslI CCNNNNNNNGG 2 cut(s) 115, 263
BsmAI GTCTC 1 cut(s) 396
BsnI GGCC 1 cut(s) 236
Bso31I GGTCTC 1 cut(s) 396
Bsp1286I GDGCHC 1 cut(s) 192
Bsp143I GATC 3 cut(s) 253, 340, 466
Bsp19I CCATGG 1 cut(s) 437
BspACI CCGC 1 cut(s) 122
BspANI GGCC 1 cut(s) 236
BspCNI CTCAG 1 cut(s) 296
BspLI GGNNCC 1 cut(s) 120
BspMAI CTGCAG 1 cut(s) 294
BspOI GCTAGC 1 cut(s) 366
BspPI GGATC 1 cut(s) 248
BspTNI GGTCTC 1 cut(s) 396
BsrDI GCAATG 1 cut(s) 169
BsrFI RCCGGY 1 cut(s) 356
BsrI ACTGG 1 cut(s) 385
BssAI RCCGGY 1 cut(s) 356
BssECI CCNNGG 3 cut(s) 237, 373, 437
BssMI GATC 3 cut(s) 253, 340, 466
BssNI GRCGYC 1 cut(s) 327
BssT1I CCWWGG 1 cut(s) 437
Bst4CI ACNGT 1 cut(s) 374
Bst6I CTCTTC 2 cut(s) 379, 436
BstACI GRCGYC 1 cut(s) 327
BstC8I GCNNGC 5 cut(s) 55, 80, 160, 358, 364
BstDEI CTNAG 1 cut(s) 283
BstDSI CCRYGG 2 cut(s) 373, 437
BstF5I GGATG 1 cut(s) 29
BstH2I RGCGCY 1 cut(s) 363
BstHHI GCGC 1 cut(s) 362
BstKTI GATC 3 cut(s) 256, 343, 469
BstMAI GTCTC 1 cut(s) 396
BstMBI GATC 3 cut(s) 253, 340, 466
BstMWI GCNNNNNNNGC 2 cut(s) 233, 335
BstNSI RCATGY 1 cut(s) 82
BstSCI CCNGG 1 cut(s) 412
BstSFI CTRYAG 1 cut(s) 290
BstV1I GCAGC 2 cut(s) 37, 254
BstX2I RGATCY 1 cut(s) 253
BstYI RGATCY 1 cut(s) 253
BsuRI GGCC 1 cut(s) 236
BtgI CCRYGG 2 cut(s) 373, 437
BtsCI GGATG 1 cut(s) 29
BtsI GCAGTG 1 cut(s) 219
BtsIMutI CAGTG 1 cut(s) 219
Cac8I GCNNGC 5 cut(s) 55, 80, 160, 358, 364
CfoI GCGC 1 cut(s) 362
Cfr10I RCCGGY 1 cut(s) 356
CseI GACGC 1 cut(s) 335
Csp6I GTAC 2 cut(s) 262, 444
CviAII CATG 4 cut(s) 45, 79, 398, 438
CviJI RGCY 8 cut(s) 5, 121, 175, 236, 267, 278, 366, 426
CviKI_1 RGCY 8 cut(s) 5, 121, 175, 236, 267, 278, 366, 426
CviQI GTAC 2 cut(s) 262, 444
DdeI CTNAG 1 cut(s) 283
DpnI GATC 3 cut(s) 255, 342, 468
DpnII GATC 3 cut(s) 253, 340, 466
Eam1104I CTCTTC 2 cut(s) 379, 436
EarI CTCTTC 2 cut(s) 379, 436
Eco130I CCWWGG 1 cut(s) 437
Eco31I GGTCTC 1 cut(s) 396
Eco57I CTGAAG 1 cut(s) 296
EcoT14I CCWWGG 1 cut(s) 437
EcoT22I ATGCAT 1 cut(s) 80
ErhI CCWWGG 1 cut(s) 437
FaeI CATG 4 cut(s) 48, 82, 401, 441
FaiI YATR 8 cut(s) 46, 80, 354, 399, 423, 439, 462, 471
FatI CATG 4 cut(s) 44, 78, 397, 437
Fnu4HI GCNGC 3 cut(s) 51, 122, 268
FokI GGATG 1 cut(s) 16
Fsp4HI GCNGC 3 cut(s) 51, 122, 268
FspBI CTAG 2 cut(s) 12, 363
GlaI GCGC 1 cut(s) 361
GluI GCNGC 3 cut(s) 51, 122, 268
HaeII RGCGCY 1 cut(s) 363
HaeIII GGCC 1 cut(s) 236
HapII CCGG 5 cut(s) 83, 113, 257, 357, 413
HgaI GACGC 1 cut(s) 335
HhaI GCGC 1 cut(s) 362
Hin1I GRCGYC 1 cut(s) 327
Hin1II CATG 4 cut(s) 48, 82, 401, 441
Hin6I GCGC 1 cut(s) 360
HinP1I GCGC 1 cut(s) 360
HindIII AAGCTT 1 cut(s) 173
HinfI GANTC 1 cut(s) 246
HpaII CCGG 5 cut(s) 83, 113, 257, 357, 413
Hpy166II GTNNAC 3 cut(s) 142, 217, 262
Hpy188I TCNGA 2 cut(s) 201, 315
Hpy8I GTNNAC 3 cut(s) 142, 217, 262
Hpy99I CGWCG 1 cut(s) 329
HpyAV CCTTC 2 cut(s) 310, 314
HpyCH4III ACNGT 1 cut(s) 374
HpyCH4IV ACGT 1 cut(s) 138
HpyCH4V TGCA 5 cut(s) 36, 57, 78, 212, 292
HpyF10VI GCNNNNNNNGC 2 cut(s) 233, 335
HpyF3I CTNAG 1 cut(s) 283
HpySE526I ACGT 1 cut(s) 138
Hsp92I GRCGYC 1 cut(s) 327
Hsp92II CATG 4 cut(s) 48, 82, 401, 441
HspAI GCGC 1 cut(s) 360
KroI GCCGGC 1 cut(s) 356
KroNI GCCGGC 1 cut(s) 358
Kzo9I GATC 3 cut(s) 253, 340, 466
LmnI GCTCC 4 cut(s) 103, 118, 195, 275
LpnPI CCDG 8 cut(s) 46, 96, 126, 270, 302, 366, 370, 426
Lsp1109I GCAGC 2 cut(s) 37, 254
LweI GCATC 1 cut(s) 199
MaeI CTAG 2 cut(s) 12, 363
MaeII ACGT 1 cut(s) 138
MaeIII GTNAC 2 cut(s) 17, 368
MalI GATC 3 cut(s) 255, 342, 468
MboI GATC 3 cut(s) 253, 340, 466
MboII GAAGA 3 cut(s) 218, 396, 423
MflI RGATCY 1 cut(s) 253
MhlI GDGCHC 1 cut(s) 192
MluCI AATT 1 cut(s) 37
MmeI TCCRAC 1 cut(s) 253
MnlI CCTC 8 cut(s) 60, 109, 204, 226, 232, 288, 356, 380
Mph1103I ATGCAT 1 cut(s) 80
MroNI GCCGGC 1 cut(s) 356
MspI CCGG 5 cut(s) 83, 113, 257, 357, 413
MspR9I CCNGG 1 cut(s) 414
MwoI GCNNNNNNNGC 2 cut(s) 233, 335
NaeI GCCGGC 1 cut(s) 358
NciI CCSGG 1 cut(s) 414
NcoI CCATGG 1 cut(s) 437
NdeII GATC 3 cut(s) 253, 340, 466
NgoMIV GCCGGC 1 cut(s) 356
NheI GCTAGC 1 cut(s) 362
NlaIII CATG 4 cut(s) 48, 82, 401, 441
NlaIV GGNNCC 1 cut(s) 120
NmeAIII GCCGAG 1 cut(s) 262
NsiI ATGCAT 1 cut(s) 80
NspI RCATGY 1 cut(s) 82
PaeI GCATGC 1 cut(s) 82
PdiI GCCGGC 1 cut(s) 358
PfeI GAWTC 1 cut(s) 246
PkrI GCNGC 3 cut(s) 52, 123, 269
Psp1406I AACGTT 1 cut(s) 138
PspN4I GGNNCC 1 cut(s) 120
PstI CTGCAG 1 cut(s) 294
PsuI RGATCY 1 cut(s) 253
RsaI GTAC 2 cut(s) 263, 445
RsaNI GTAC 2 cut(s) 262, 444
SatI GCNGC 3 cut(s) 51, 122, 268
Sau3AI GATC 3 cut(s) 253, 340, 466
ScaI AGTACT 1 cut(s) 445
ScrFI CCNGG 1 cut(s) 414
SduI GDGCHC 1 cut(s) 192
SetI ASST 5 cut(s) 141, 177, 280, 368, 428
SfaNI GCATC 1 cut(s) 199
SfcI CTRYAG 1 cut(s) 290
SphI GCATGC 1 cut(s) 82
Sse9I AATT 1 cut(s) 37
SsiI CCGC 1 cut(s) 122
SspMI CTAG 2 cut(s) 12, 363
StyD4I CCNGG 1 cut(s) 412
StyI CCWWGG 1 cut(s) 437
TaaI ACNGT 1 cut(s) 374
TaiI ACGT 1 cut(s) 141
TaqI TCGA 2 cut(s) 307, 324
TasI AATT 1 cut(s) 37
TatI WGTACW 1 cut(s) 443
TauI GCSGC 1 cut(s) 124
TfiI GAWTC 1 cut(s) 246
TscAI CASTG 1 cut(s) 219
TseI GCWGC 2 cut(s) 50, 267
TspGWI ACGGA 1 cut(s) 338
TspRI CASTG 1 cut(s) 219
XceI RCATGY 1 cut(s) 82
XspI CTAG 2 cut(s) 12, 363
ZrmI AGTACT 1 cut(s) 445
Zsp2I ATGCAT 1 cut(s) 80
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.