Rw2G052860

LOB domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0013925
Physical Location & Seq
Forward (+)
80779084 .. 80781200
2117 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G052860.1

Sequence Viewer

Length: 516 bp
ATGATCGAGTATCCATTCCTGATCAATTTGCTTATAGTATGCATGGCTTCGTCTAGTAGTTACTCATCATCCTGCAATTCTCCATGTGCTGCGTGCAAGTTCTTGAGGAGAAAATGCATGCCGGATTGTGTATTTGCTCCCTACTTCCCACCGGAGGAGCCGCACAAGTTTGCCAATGTTCACAAGATATTTGGGGCCAGCAATGTTAGTAAGCTTCTCAATGAAGTGCTCCCTCATCAGAGAGAAGATGCAGTGAACTCCCTTGCCTATGAAGCCGAGGCAAGAATTAAAGATCCGGTGTACGGATGCGTTGGAGCCATCTCAGTCCTCCAAAGGCAAGTCCTTCGCCTTCAGAAGGAACTCGACGCCACTAATGCCGATCTCCTCCGTTATGCCGGCGCTAGCTGCAACCGTGGAACCGGAAGAGGGTCTCATCATGGTCAAAATTCGGGTTTGTATAGCTTCTCTTCTCCATGGAGTAGTACTCATGACCCGTACGGAGATCACAGAAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOB

Protein Analysis

171

Amino Acids

18.92

Weight (kDa)

8.12

Isoelectric Point (pI)

55.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOB PF03195 28 - 125 7.7e-42 Lateral organ boundaries (LOB) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013925)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G27650
fragaria_vesca FvH4_6g51300 FvH4_6g51300 FvH4_6g51300
malus_domestica MD17G1029300.v1.1
prunus_persica Prupe.3G290800_v2.0.a1
pyrus_communis pycom17g02650
rosa_chinensis RchiOBHm_Chr2g0172921
rosa_laevigata RLG00000022142
rosa_multiflora Rmu_sc0009727.1_g000002
rosa_roxburghii Rroxscaffold_2G00079420
rosa_rugosa Rorug02G0563600
rosa_samantha Rh2AG640400 Rh2BG653900 Rh2CG619500 Rh2DG667500
rosa_wichuraiana Rw2G052860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 161
AclWI GGATC 1 cut(s) 287
AcsI RAATTY 1 cut(s) 445
AcuI CTGAAG 1 cut(s) 335
AcyI GRCGYC 1 cut(s) 366
AfaI GTAC 3 cut(s) 302, 484, 497
AfiI CCNNNNNNNGG 4 cut(s) 154, 302, 355, 426
AluBI AGCT 3 cut(s) 214, 405, 462
AluI AGCT 3 cut(s) 214, 405, 462
Alw21I GWGCWC 1 cut(s) 231
Alw26I GTCTC 1 cut(s) 435
AlwI GGATC 1 cut(s) 287
AoxI GGCC 1 cut(s) 195
ApeKI GCWGC 2 cut(s) 89, 405
ApoI RAATTY 1 cut(s) 445
AspLEI GCGC 1 cut(s) 401
AspS9I GGNCC 1 cut(s) 195
AsuNHI GCTAGC 1 cut(s) 401
Bbv12I GWGCWC 1 cut(s) 231
BbvI GCAGC 2 cut(s) 76, 392
BccI CCATC 1 cut(s) 326
BcgI CGANNNNNNTGC 2 cut(s) 326, 360
BciVI GTATCC 1 cut(s) 21
BclI TGATCA 1 cut(s) 21
BcoDI GTCTC 1 cut(s) 435
BfaI CTAG 2 cut(s) 54, 402
BfoI RGCGCY 1 cut(s) 402
BfuI GTATCC 1 cut(s) 21
BisI GCNGC 3 cut(s) 90, 161, 406
BlsI GCNGC 3 cut(s) 91, 162, 407
BmcAI AGTACT 1 cut(s) 484
BmgT120I GGNCC 1 cut(s) 195
BmiI GGNNCC 4 cut(s) 159, 196, 316, 418
BmsI GCATC 2 cut(s) 238, 296
BmtI GCTAGC 1 cut(s) 405
BplI GAGNNNNNCTC 2 cut(s) 469, 501
BpuEI CTTGAG 1 cut(s) 124
BsaHI GRCGYC 1 cut(s) 366
BsaI GGTCTC 1 cut(s) 435
BsaJI CCNNGG 3 cut(s) 276, 412, 473
BsaWI WCCGGW 3 cut(s) 151, 295, 419
Bsc4I CCNNNNNNNGG 4 cut(s) 154, 302, 355, 426
Bse118I RCCGGY 1 cut(s) 395
Bse3DI GCAATG 1 cut(s) 208
BseDI CCNNGG 3 cut(s) 276, 412, 473
BseGI GGATG 2 cut(s) 68, 311
BseLI CCNNNNNNNGG 4 cut(s) 154, 302, 355, 426
BseMI GCAATG 1 cut(s) 208
BseMII CTCAG 1 cut(s) 336
BseRI GAGGAG 3 cut(s) 121, 170, 374
BseXI GCAGC 2 cut(s) 76, 392
BshFI GGCC 1 cut(s) 197
BsiHKAI GWGCWC 1 cut(s) 231
BsiSI CCGG 5 cut(s) 122, 152, 296, 396, 420
BsiWI CGTACG 1 cut(s) 495
BslI CCNNNNNNNGG 4 cut(s) 154, 302, 355, 426
BsmAI GTCTC 1 cut(s) 435
BsnI GGCC 1 cut(s) 197
Bso31I GGTCTC 1 cut(s) 435
Bsp1286I GDGCHC 1 cut(s) 231
Bsp143I GATC 5 cut(s) 3, 21, 292, 379, 502
Bsp19I CCATGG 1 cut(s) 473
BspACI CCGC 1 cut(s) 161
BspANI GGCC 1 cut(s) 197
BspCNI CTCAG 1 cut(s) 335
BspHI TCATGA 1 cut(s) 487
BspLI GGNNCC 4 cut(s) 159, 196, 316, 418
BspOI GCTAGC 1 cut(s) 405
BspPI GGATC 1 cut(s) 287
BspTNI GGTCTC 1 cut(s) 435
BsrDI GCAATG 1 cut(s) 208
BsrFI RCCGGY 1 cut(s) 395
BssAI RCCGGY 1 cut(s) 395
BssECI CCNNGG 3 cut(s) 276, 412, 473
BssMI GATC 5 cut(s) 3, 21, 292, 379, 502
BssNI GRCGYC 1 cut(s) 366
BssT1I CCWWGG 1 cut(s) 473
Bst4CI ACNGT 1 cut(s) 413
Bst6I CTCTTC 2 cut(s) 418, 472
BstACI GRCGYC 1 cut(s) 366
BstC8I GCNNGC 5 cut(s) 94, 119, 199, 397, 403
BstDEI CTNAG 1 cut(s) 322
BstDSI CCRYGG 2 cut(s) 412, 473
BstENI CCTNNNNNAGG 1 cut(s) 353
BstF5I GGATG 2 cut(s) 68, 311
BstH2I RGCGCY 1 cut(s) 402
BstHHI GCGC 1 cut(s) 401
BstKTI GATC 5 cut(s) 6, 24, 295, 382, 505
BstMAI GTCTC 1 cut(s) 435
BstMBI GATC 5 cut(s) 3, 21, 292, 379, 502
BstMWI GCNNNNNNNGC 3 cut(s) 272, 374, 405
BstNSI RCATGY 1 cut(s) 121
BstV1I GCAGC 2 cut(s) 76, 392
BstX2I RGATCY 1 cut(s) 292
BstYI RGATCY 1 cut(s) 292
BsuI GTATCC 1 cut(s) 21
BsuRI GGCC 1 cut(s) 197
BtgI CCRYGG 2 cut(s) 412, 473
BtsCI GGATG 2 cut(s) 68, 311
BtsI GCAGTG 1 cut(s) 258
BtsIMutI CAGTG 1 cut(s) 258
Cac8I GCNNGC 5 cut(s) 94, 119, 199, 397, 403
CciI TCATGA 1 cut(s) 487
CfoI GCGC 1 cut(s) 401
Cfr10I RCCGGY 1 cut(s) 395
Cfr13I GGNCC 1 cut(s) 195
CseI GACGC 1 cut(s) 374
Csp6I GTAC 3 cut(s) 301, 483, 496
CviAII CATG 6 cut(s) 43, 84, 118, 437, 474, 488
CviJI RGCY 8 cut(s) 47, 160, 197, 214, 275, 317, 405, 462
CviKI_1 RGCY 8 cut(s) 47, 160, 197, 214, 275, 317, 405, 462
CviQI GTAC 3 cut(s) 301, 483, 496
DdeI CTNAG 1 cut(s) 322
DpnI GATC 5 cut(s) 5, 23, 294, 381, 504
DpnII GATC 5 cut(s) 3, 21, 292, 379, 502
Eam1104I CTCTTC 2 cut(s) 418, 472
EarI CTCTTC 2 cut(s) 418, 472
Eco130I CCWWGG 1 cut(s) 473
Eco31I GGTCTC 1 cut(s) 435
Eco57I CTGAAG 1 cut(s) 335
EcoNI CCTNNNNNAGG 1 cut(s) 353
EcoT14I CCWWGG 1 cut(s) 473
EcoT22I ATGCAT 2 cut(s) 44, 119
ErhI CCWWGG 1 cut(s) 473
FaeI CATG 6 cut(s) 46, 87, 121, 440, 477, 491
FatI CATG 6 cut(s) 42, 83, 117, 436, 473, 487
FbaI TGATCA 1 cut(s) 21
Fnu4HI GCNGC 3 cut(s) 90, 161, 406
FokI GGATG 2 cut(s) 55, 318
Fsp4HI GCNGC 3 cut(s) 90, 161, 406
FspBI CTAG 2 cut(s) 54, 402
GlaI GCGC 1 cut(s) 400
GluI GCNGC 3 cut(s) 90, 161, 406
HaeII RGCGCY 1 cut(s) 402
HaeIII GGCC 1 cut(s) 197
HapII CCGG 5 cut(s) 122, 152, 296, 396, 420
HgaI GACGC 1 cut(s) 374
HhaI GCGC 1 cut(s) 401
Hin1I GRCGYC 1 cut(s) 366
Hin1II CATG 6 cut(s) 46, 87, 121, 440, 477, 491
Hin6I GCGC 1 cut(s) 399
HinP1I GCGC 1 cut(s) 399
HindIII AAGCTT 1 cut(s) 212
HpaII CCGG 5 cut(s) 122, 152, 296, 396, 420
Hpy166II GTNNAC 3 cut(s) 181, 256, 301
Hpy188I TCNGA 2 cut(s) 240, 354
Hpy188III TCNNGA 3 cut(s) 19, 103, 488
Hpy8I GTNNAC 3 cut(s) 181, 256, 301
Hpy99I CGWCG 1 cut(s) 368
HpyAV CCTTC 3 cut(s) 349, 353, 359
HpyCH4III ACNGT 1 cut(s) 413
HpyCH4V TGCA 6 cut(s) 42, 75, 96, 117, 251, 408
HpyF10VI GCNNNNNNNGC 3 cut(s) 272, 374, 405
HpyF3I CTNAG 1 cut(s) 322
Hsp92I GRCGYC 1 cut(s) 366
Hsp92II CATG 6 cut(s) 46, 87, 121, 440, 477, 491
HspAI GCGC 1 cut(s) 399
KroI GCCGGC 1 cut(s) 395
KroNI GCCGGC 1 cut(s) 397
Ksp22I TGATCA 1 cut(s) 21
Kzo9I GATC 5 cut(s) 3, 21, 292, 379, 502
LmnI GCTCC 4 cut(s) 142, 157, 234, 314
LpnPI CCDG 8 cut(s) 32, 85, 135, 165, 211, 309, 409, 433
Lsp1109I GCAGC 2 cut(s) 76, 392
LweI GCATC 2 cut(s) 238, 296
MaeI CTAG 2 cut(s) 54, 402
MaeIII GTNAC 1 cut(s) 59
MalI GATC 5 cut(s) 5, 23, 294, 381, 504
MboI GATC 5 cut(s) 3, 21, 292, 379, 502
MboII GAAGA 3 cut(s) 257, 435, 459
MflI RGATCY 1 cut(s) 292
MhlI GDGCHC 1 cut(s) 231
MluCI AATT 5 cut(s) 25, 76, 285, 445, 511
MmeI TCCRAC 1 cut(s) 292
MnlI CCTC 7 cut(s) 99, 148, 243, 271, 338, 395, 419
Mph1103I ATGCAT 2 cut(s) 44, 119
MroNI GCCGGC 1 cut(s) 395
MseI TTAA 1 cut(s) 288
MspI CCGG 5 cut(s) 122, 152, 296, 396, 420
MwoI GCNNNNNNNGC 3 cut(s) 272, 374, 405
NaeI GCCGGC 1 cut(s) 397
NcoI CCATGG 1 cut(s) 473
NdeII GATC 5 cut(s) 3, 21, 292, 379, 502
NgoMIV GCCGGC 1 cut(s) 395
NheI GCTAGC 1 cut(s) 401
NlaIII CATG 6 cut(s) 46, 87, 121, 440, 477, 491
NlaIV GGNNCC 4 cut(s) 159, 196, 316, 418
NmeAIII GCCGAG 1 cut(s) 301
NsiI ATGCAT 2 cut(s) 44, 119
NspI RCATGY 1 cut(s) 121
PaeI GCATGC 1 cut(s) 121
PagI TCATGA 1 cut(s) 487
PdiI GCCGGC 1 cut(s) 397
Pfl23II CGTACG 1 cut(s) 495
PkrI GCNGC 3 cut(s) 91, 162, 407
PspLI CGTACG 1 cut(s) 495
PspN4I GGNNCC 4 cut(s) 159, 196, 316, 418
PspPI GGNCC 1 cut(s) 195
PsuI RGATCY 1 cut(s) 292
RsaI GTAC 3 cut(s) 302, 484, 497
RsaNI GTAC 3 cut(s) 301, 483, 496
SaqAI TTAA 1 cut(s) 288
SatI GCNGC 3 cut(s) 90, 161, 406
Sau3AI GATC 5 cut(s) 3, 21, 292, 379, 502
Sau96I GGNCC 1 cut(s) 195
ScaI AGTACT 1 cut(s) 484
SduI GDGCHC 1 cut(s) 231
SetI ASST 3 cut(s) 216, 407, 464
SfaNI GCATC 2 cut(s) 238, 296
SmlI CTYRAG 1 cut(s) 103
SmoI CTYRAG 1 cut(s) 103
SphI GCATGC 1 cut(s) 121
Sse9I AATT 5 cut(s) 25, 76, 285, 445, 511
SsiI CCGC 1 cut(s) 161
SspMI CTAG 2 cut(s) 54, 402
StyI CCWWGG 1 cut(s) 473
TaaI ACNGT 1 cut(s) 413
TaqI TCGA 2 cut(s) 6, 363
TasI AATT 5 cut(s) 25, 76, 285, 445, 511
TatI WGTACW 1 cut(s) 482
TauI GCSGC 1 cut(s) 163
Tru1I TTAA 1 cut(s) 288
Tru9I TTAA 1 cut(s) 288
TscAI CASTG 1 cut(s) 258
TseI GCWGC 2 cut(s) 89, 405
TspDTI ATGAA 2 cut(s) 237, 285
TspGWI ACGGA 3 cut(s) 318, 377, 513
TspRI CASTG 1 cut(s) 258
XagI CCTNNNNNAGG 1 cut(s) 353
XapI RAATTY 1 cut(s) 445
XceI RCATGY 1 cut(s) 121
XspI CTAG 2 cut(s) 54, 402
ZrmI AGTACT 1 cut(s) 484
Zsp2I ATGCAT 2 cut(s) 44, 119
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.