Rh2AG640400

LOB domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0013925
Physical Location & Seq
Forward (+)
86375848 .. 86378477
2630 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG640400.1

Sequence Viewer

Length: 474 bp
ATGGCTTCGTCTAGTAGTTACTCATCATCCTGCAATTCTCCATGTGCTGCGTGCAAGTTCTTGAGGAGAAAATGCATGCCGGATTGTGTATTTGCTCCCTACTTCCCACCGGAGGAGCCGCACAAGTTTGCCAATGTTCACAAGATATTTGGGGCTAGCAATGTTAGTAAGCTTCTCAATGAAGTGCTCCCTCATCAGAGAGAAGATGCAGTGAACTCCCTTGCCTATGAAGCCGAGGCAAGAATTAAAGATCCGGTGTACGGATGCGTTGGAGCCATCTCAGTCCTCCAAAGGCAAGTCCTTCGCCTTCAGAAGGAACTCGACGCCACTAATGCCGATCTCCTCCGTTATGCCGGCGCTAGCTGCAACCGTGGAACCGGAAGAGGGTCTCATCACGGTCAAAATTCGGGTTTGTATAGCTTCTCTTCTCCATGGAGTAGTACTCATGACCCGTACGGAGATCACAGAAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOB

Protein Analysis

157

Amino Acids

17.25

Weight (kDa)

8.48

Isoelectric Point (pI)

53.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOB PF03195 14 - 111 6.1e-42 Lateral organ boundaries (LOB) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013925)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G27650
fragaria_vesca FvH4_6g51300 FvH4_6g51300 FvH4_6g51300
malus_domestica MD17G1029300.v1.1
prunus_persica Prupe.3G290800_v2.0.a1
pyrus_communis pycom17g02650
rosa_chinensis RchiOBHm_Chr2g0172921
rosa_laevigata RLG00000022142
rosa_multiflora Rmu_sc0009727.1_g000002
rosa_roxburghii Rroxscaffold_2G00079420
rosa_rugosa Rorug02G0563600
rosa_samantha Rh2AG640400 Rh2BG653900 Rh2CG619500 Rh2DG667500
rosa_wichuraiana Rw2G052860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 119
AclWI GGATC 1 cut(s) 245
AcsI RAATTY 1 cut(s) 403
AcuI CTGAAG 1 cut(s) 293
AcyI GRCGYC 1 cut(s) 324
AfaI GTAC 3 cut(s) 260, 442, 455
AfiI CCNNNNNNNGG 4 cut(s) 112, 260, 313, 384
AluBI AGCT 3 cut(s) 172, 363, 420
AluI AGCT 3 cut(s) 172, 363, 420
Alw21I GWGCWC 1 cut(s) 189
Alw26I GTCTC 1 cut(s) 393
AlwI GGATC 1 cut(s) 245
ApeKI GCWGC 2 cut(s) 47, 363
ApoI RAATTY 1 cut(s) 403
AspLEI GCGC 1 cut(s) 359
AsuNHI GCTAGC 2 cut(s) 155, 359
Bbv12I GWGCWC 1 cut(s) 189
BbvI GCAGC 2 cut(s) 34, 350
BccI CCATC 1 cut(s) 284
BcgI CGANNNNNNTGC 2 cut(s) 284, 318
BcoDI GTCTC 1 cut(s) 393
BfaI CTAG 3 cut(s) 12, 156, 360
BfoI RGCGCY 1 cut(s) 360
BisI GCNGC 3 cut(s) 48, 119, 364
BlsI GCNGC 3 cut(s) 49, 120, 365
BmcAI AGTACT 1 cut(s) 442
BmiI GGNNCC 3 cut(s) 117, 274, 376
BmsI GCATC 2 cut(s) 196, 254
BmtI GCTAGC 2 cut(s) 159, 363
BplI GAGNNNNNCTC 2 cut(s) 427, 459
BpuEI CTTGAG 1 cut(s) 82
BsaHI GRCGYC 1 cut(s) 324
BsaI GGTCTC 1 cut(s) 393
BsaJI CCNNGG 3 cut(s) 234, 370, 431
BsaWI WCCGGW 3 cut(s) 109, 253, 377
Bsc4I CCNNNNNNNGG 4 cut(s) 112, 260, 313, 384
Bse118I RCCGGY 1 cut(s) 353
Bse3DI GCAATG 1 cut(s) 166
BseDI CCNNGG 3 cut(s) 234, 370, 431
BseGI GGATG 2 cut(s) 26, 269
BseLI CCNNNNNNNGG 4 cut(s) 112, 260, 313, 384
BseMI GCAATG 1 cut(s) 166
BseMII CTCAG 1 cut(s) 294
BseRI GAGGAG 3 cut(s) 79, 128, 332
BseXI GCAGC 2 cut(s) 34, 350
BsiHKAI GWGCWC 1 cut(s) 189
BsiSI CCGG 5 cut(s) 80, 110, 254, 354, 378
BsiWI CGTACG 1 cut(s) 453
BslI CCNNNNNNNGG 4 cut(s) 112, 260, 313, 384
BsmAI GTCTC 1 cut(s) 393
Bso31I GGTCTC 1 cut(s) 393
Bsp1286I GDGCHC 1 cut(s) 189
Bsp143I GATC 3 cut(s) 250, 337, 460
Bsp19I CCATGG 1 cut(s) 431
BspACI CCGC 1 cut(s) 119
BspCNI CTCAG 1 cut(s) 293
BspHI TCATGA 1 cut(s) 445
BspLI GGNNCC 3 cut(s) 117, 274, 376
BspOI GCTAGC 2 cut(s) 159, 363
BspPI GGATC 1 cut(s) 245
BspTNI GGTCTC 1 cut(s) 393
BsrDI GCAATG 1 cut(s) 166
BsrFI RCCGGY 1 cut(s) 353
BssAI RCCGGY 1 cut(s) 353
BssECI CCNNGG 3 cut(s) 234, 370, 431
BssMI GATC 3 cut(s) 250, 337, 460
BssNI GRCGYC 1 cut(s) 324
BssT1I CCWWGG 1 cut(s) 431
Bst4CI ACNGT 2 cut(s) 371, 398
Bst6I CTCTTC 2 cut(s) 376, 430
BstACI GRCGYC 1 cut(s) 324
BstC8I GCNNGC 5 cut(s) 52, 77, 157, 355, 361
BstDEI CTNAG 1 cut(s) 280
BstDSI CCRYGG 2 cut(s) 370, 431
BstENI CCTNNNNNAGG 1 cut(s) 311
BstF5I GGATG 2 cut(s) 26, 269
BstH2I RGCGCY 1 cut(s) 360
BstHHI GCGC 1 cut(s) 359
BstKTI GATC 3 cut(s) 253, 340, 463
BstMAI GTCTC 1 cut(s) 393
BstMBI GATC 3 cut(s) 250, 337, 460
BstMWI GCNNNNNNNGC 3 cut(s) 230, 332, 363
BstNSI RCATGY 1 cut(s) 79
BstV1I GCAGC 2 cut(s) 34, 350
BstX2I RGATCY 1 cut(s) 250
BstYI RGATCY 1 cut(s) 250
BtgI CCRYGG 2 cut(s) 370, 431
BtsCI GGATG 2 cut(s) 26, 269
BtsI GCAGTG 1 cut(s) 216
BtsIMutI CAGTG 1 cut(s) 216
Cac8I GCNNGC 5 cut(s) 52, 77, 157, 355, 361
CciI TCATGA 1 cut(s) 445
CfoI GCGC 1 cut(s) 359
Cfr10I RCCGGY 1 cut(s) 353
CseI GACGC 1 cut(s) 332
Csp6I GTAC 3 cut(s) 259, 441, 454
CviAII CATG 4 cut(s) 42, 76, 432, 446
CviJI RGCY 8 cut(s) 5, 118, 155, 172, 233, 275, 363, 420
CviKI_1 RGCY 8 cut(s) 5, 118, 155, 172, 233, 275, 363, 420
CviQI GTAC 3 cut(s) 259, 441, 454
DdeI CTNAG 1 cut(s) 280
DpnI GATC 3 cut(s) 252, 339, 462
DpnII GATC 3 cut(s) 250, 337, 460
Eam1104I CTCTTC 2 cut(s) 376, 430
EarI CTCTTC 2 cut(s) 376, 430
Eco130I CCWWGG 1 cut(s) 431
Eco31I GGTCTC 1 cut(s) 393
Eco57I CTGAAG 1 cut(s) 293
EcoNI CCTNNNNNAGG 1 cut(s) 311
EcoT14I CCWWGG 1 cut(s) 431
EcoT22I ATGCAT 1 cut(s) 77
ErhI CCWWGG 1 cut(s) 431
FaeI CATG 4 cut(s) 45, 79, 435, 449
FaiI YATR 7 cut(s) 43, 77, 228, 351, 417, 433, 447
FatI CATG 4 cut(s) 41, 75, 431, 445
Fnu4HI GCNGC 3 cut(s) 48, 119, 364
FokI GGATG 2 cut(s) 13, 276
Fsp4HI GCNGC 3 cut(s) 48, 119, 364
FspBI CTAG 3 cut(s) 12, 156, 360
GlaI GCGC 1 cut(s) 358
GluI GCNGC 3 cut(s) 48, 119, 364
HaeII RGCGCY 1 cut(s) 360
HapII CCGG 5 cut(s) 80, 110, 254, 354, 378
HgaI GACGC 1 cut(s) 332
HhaI GCGC 1 cut(s) 359
Hin1I GRCGYC 1 cut(s) 324
Hin1II CATG 4 cut(s) 45, 79, 435, 449
Hin6I GCGC 1 cut(s) 357
HinP1I GCGC 1 cut(s) 357
HindIII AAGCTT 1 cut(s) 170
HpaII CCGG 5 cut(s) 80, 110, 254, 354, 378
Hpy166II GTNNAC 3 cut(s) 139, 214, 259
Hpy188I TCNGA 2 cut(s) 198, 312
Hpy188III TCNNGA 2 cut(s) 61, 446
Hpy8I GTNNAC 3 cut(s) 139, 214, 259
Hpy99I CGWCG 1 cut(s) 326
HpyAV CCTTC 3 cut(s) 307, 311, 317
HpyCH4III ACNGT 2 cut(s) 371, 398
HpyCH4V TGCA 5 cut(s) 33, 54, 75, 209, 366
HpyF10VI GCNNNNNNNGC 3 cut(s) 230, 332, 363
HpyF3I CTNAG 1 cut(s) 280
Hsp92I GRCGYC 1 cut(s) 324
Hsp92II CATG 4 cut(s) 45, 79, 435, 449
HspAI GCGC 1 cut(s) 357
KroI GCCGGC 1 cut(s) 353
KroNI GCCGGC 1 cut(s) 355
Kzo9I GATC 3 cut(s) 250, 337, 460
LmnI GCTCC 4 cut(s) 100, 115, 192, 272
LpnPI CCDG 6 cut(s) 43, 93, 123, 267, 367, 391
Lsp1109I GCAGC 2 cut(s) 34, 350
LweI GCATC 2 cut(s) 196, 254
MaeI CTAG 3 cut(s) 12, 156, 360
MaeIII GTNAC 1 cut(s) 17
MalI GATC 3 cut(s) 252, 339, 462
MboI GATC 3 cut(s) 250, 337, 460
MboII GAAGA 3 cut(s) 215, 393, 417
MflI RGATCY 1 cut(s) 250
MhlI GDGCHC 1 cut(s) 189
MluCI AATT 4 cut(s) 34, 243, 403, 469
MmeI TCCRAC 1 cut(s) 250
MnlI CCTC 7 cut(s) 57, 106, 201, 229, 296, 353, 377
Mph1103I ATGCAT 1 cut(s) 77
MroNI GCCGGC 1 cut(s) 353
MseI TTAA 2 cut(s) 246, 472
MspI CCGG 5 cut(s) 80, 110, 254, 354, 378
MwoI GCNNNNNNNGC 3 cut(s) 230, 332, 363
NaeI GCCGGC 1 cut(s) 355
NcoI CCATGG 1 cut(s) 431
NdeII GATC 3 cut(s) 250, 337, 460
NgoMIV GCCGGC 1 cut(s) 353
NheI GCTAGC 2 cut(s) 155, 359
NlaIII CATG 4 cut(s) 45, 79, 435, 449
NlaIV GGNNCC 3 cut(s) 117, 274, 376
NmeAIII GCCGAG 1 cut(s) 259
NsiI ATGCAT 1 cut(s) 77
NspI RCATGY 1 cut(s) 79
PaeI GCATGC 1 cut(s) 79
PagI TCATGA 1 cut(s) 445
PdiI GCCGGC 1 cut(s) 355
Pfl23II CGTACG 1 cut(s) 453
PkrI GCNGC 3 cut(s) 49, 120, 365
PspLI CGTACG 1 cut(s) 453
PspN4I GGNNCC 3 cut(s) 117, 274, 376
PsuI RGATCY 1 cut(s) 250
RsaI GTAC 3 cut(s) 260, 442, 455
RsaNI GTAC 3 cut(s) 259, 441, 454
SaqAI TTAA 2 cut(s) 246, 472
SatI GCNGC 3 cut(s) 48, 119, 364
Sau3AI GATC 3 cut(s) 250, 337, 460
ScaI AGTACT 1 cut(s) 442
SduI GDGCHC 1 cut(s) 189
SetI ASST 3 cut(s) 174, 365, 422
SfaNI GCATC 2 cut(s) 196, 254
SmlI CTYRAG 1 cut(s) 61
SmoI CTYRAG 1 cut(s) 61
SphI GCATGC 1 cut(s) 79
Sse9I AATT 4 cut(s) 34, 243, 403, 469
SsiI CCGC 1 cut(s) 119
SspMI CTAG 3 cut(s) 12, 156, 360
StyI CCWWGG 1 cut(s) 431
TaaI ACNGT 2 cut(s) 371, 398
TaqI TCGA 1 cut(s) 321
TasI AATT 4 cut(s) 34, 243, 403, 469
TatI WGTACW 1 cut(s) 440
TauI GCSGC 1 cut(s) 121
Tru1I TTAA 2 cut(s) 246, 472
Tru9I TTAA 2 cut(s) 246, 472
TscAI CASTG 1 cut(s) 216
TseI GCWGC 2 cut(s) 47, 363
TspDTI ATGAA 2 cut(s) 195, 243
TspGWI ACGGA 3 cut(s) 276, 335, 471
TspRI CASTG 1 cut(s) 216
XagI CCTNNNNNAGG 1 cut(s) 311
XapI RAATTY 1 cut(s) 403
XceI RCATGY 1 cut(s) 79
XspI CTAG 3 cut(s) 12, 156, 360
ZrmI AGTACT 1 cut(s) 442
Zsp2I ATGCAT 1 cut(s) 77
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.