Rh2DG667500

LOB domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0013925
Physical Location & Seq
Forward (+)
89184888 .. 89186946
2059 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG667500.1

Sequence Viewer

Length: 591 bp
ATGAGGCATATCACAAGTACTAATGGATGCATGAAATTCTGTATATTTACAGAGGCACTAATGGATGAATTTAAATTTCGAATGGAATTTCTAATTAATTTGCTGCAGATAGTATGCATGGCTTCGTCTAGTAGTTACTCATCATCCTGCAATTCTCCATGTGCTGCGTGCAAGTTCTTGAGGAGAAAATGCATGCCGGATTGTGTATTTGCTCCCTACTTCCCACCGGAGGAGCCGCACAAGTTTGCCAATGTTCACAAGATATTTGGGGCCAGCAATGTTAGTAAGCTTCTCAATGAAGTGCTCCCTCATCAGAGAGAAGATGCAGTGAACTCCCTTGCCTATGAAGCCGAGGCAAGAATTAAAGATCCGGTGTACGGATGCGTTGGAGCCATCTCAGTCCTCCAAAGGCAAGTCCTTCGCCTTCAGAAGGAACTCGACGCCACTAATGCCGATCTCCTCCGTTATGCCGGCGCTAGCTGCAACCGTGGAACCGGAAGAGGGTCTCATCATGGTCAAAATTCGGGTTTGTATAGCTTCTCTTCTCCATGGAGTAGTACTCATGACCCGTACGGAGATCACAGAAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOB

Protein Analysis

196

Amino Acids

21.91

Weight (kDa)

8.33

Isoelectric Point (pI)

50.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOB PF03195 53 - 150 1.1e-41 Lateral organ boundaries (LOB) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013925)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G27650
fragaria_vesca FvH4_6g51300 FvH4_6g51300 FvH4_6g51300
malus_domestica MD17G1029300.v1.1
prunus_persica Prupe.3G290800_v2.0.a1
pyrus_communis pycom17g02650
rosa_chinensis RchiOBHm_Chr2g0172921
rosa_laevigata RLG00000022142
rosa_multiflora Rmu_sc0009727.1_g000002
rosa_roxburghii Rroxscaffold_2G00079420
rosa_rugosa Rorug02G0563600
rosa_samantha Rh2AG640400 Rh2BG653900 Rh2CG619500 Rh2DG667500
rosa_wichuraiana Rw2G052860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 236
AclWI GGATC 1 cut(s) 362
AcsI RAATTY 5 cut(s) 35, 68, 74, 86, 520
AcuI CTGAAG 1 cut(s) 410
AcyI GRCGYC 1 cut(s) 441
AfaI GTAC 4 cut(s) 19, 377, 559, 572
AfiI CCNNNNNNNGG 4 cut(s) 229, 377, 430, 501
AluBI AGCT 3 cut(s) 289, 480, 537
AluI AGCT 3 cut(s) 289, 480, 537
Alw21I GWGCWC 1 cut(s) 306
Alw26I GTCTC 1 cut(s) 510
AlwI GGATC 1 cut(s) 362
AoxI GGCC 1 cut(s) 270
ApeKI GCWGC 3 cut(s) 103, 164, 480
ApoI RAATTY 5 cut(s) 35, 68, 74, 86, 520
AseI ATTAAT 1 cut(s) 96
AspLEI GCGC 1 cut(s) 476
AspS9I GGNCC 1 cut(s) 270
AsuII TTCGAA 1 cut(s) 79
AsuNHI GCTAGC 1 cut(s) 476
Bbv12I GWGCWC 1 cut(s) 306
BbvI GCAGC 3 cut(s) 90, 151, 467
BccI CCATC 1 cut(s) 401
BcgI CGANNNNNNTGC 2 cut(s) 401, 435
BcoDI GTCTC 1 cut(s) 510
BfaI CTAG 2 cut(s) 129, 477
BfmI CTRYAG 1 cut(s) 104
BfoI RGCGCY 1 cut(s) 477
BisI GCNGC 4 cut(s) 104, 165, 236, 481
BlsI GCNGC 4 cut(s) 105, 166, 237, 482
BmcAI AGTACT 2 cut(s) 19, 559
BmgT120I GGNCC 1 cut(s) 270
BmiI GGNNCC 4 cut(s) 234, 271, 391, 493
BmsI GCATC 3 cut(s) 17, 313, 371
BmtI GCTAGC 1 cut(s) 480
BplI GAGNNNNNCTC 2 cut(s) 544, 576
Bpu14I TTCGAA 1 cut(s) 79
BpuEI CTTGAG 1 cut(s) 199
BsaHI GRCGYC 1 cut(s) 441
BsaI GGTCTC 1 cut(s) 510
BsaJI CCNNGG 3 cut(s) 351, 487, 548
BsaWI WCCGGW 3 cut(s) 226, 370, 494
Bsc4I CCNNNNNNNGG 4 cut(s) 229, 377, 430, 501
Bse118I RCCGGY 1 cut(s) 470
Bse3DI GCAATG 1 cut(s) 283
BseDI CCNNGG 3 cut(s) 351, 487, 548
BseGI GGATG 4 cut(s) 32, 70, 143, 386
BseLI CCNNNNNNNGG 4 cut(s) 229, 377, 430, 501
BseMI GCAATG 1 cut(s) 283
BseMII CTCAG 1 cut(s) 411
BseRI GAGGAG 3 cut(s) 196, 245, 449
BseXI GCAGC 3 cut(s) 90, 151, 467
BshFI GGCC 1 cut(s) 272
BsiHKAI GWGCWC 1 cut(s) 306
BsiSI CCGG 5 cut(s) 197, 227, 371, 471, 495
BsiWI CGTACG 1 cut(s) 570
BslI CCNNNNNNNGG 4 cut(s) 229, 377, 430, 501
BsmAI GTCTC 1 cut(s) 510
BsnI GGCC 1 cut(s) 272
Bso31I GGTCTC 1 cut(s) 510
Bsp119I TTCGAA 1 cut(s) 79
Bsp1286I GDGCHC 1 cut(s) 306
Bsp143I GATC 3 cut(s) 367, 454, 577
Bsp19I CCATGG 1 cut(s) 548
BspACI CCGC 1 cut(s) 236
BspANI GGCC 1 cut(s) 272
BspCNI CTCAG 1 cut(s) 410
BspHI TCATGA 1 cut(s) 562
BspLI GGNNCC 4 cut(s) 234, 271, 391, 493
BspMAI CTGCAG 1 cut(s) 108
BspOI GCTAGC 1 cut(s) 480
BspPI GGATC 1 cut(s) 362
BspT104I TTCGAA 1 cut(s) 79
BspTNI GGTCTC 1 cut(s) 510
BsrDI GCAATG 1 cut(s) 283
BsrFI RCCGGY 1 cut(s) 470
BssAI RCCGGY 1 cut(s) 470
BssECI CCNNGG 3 cut(s) 351, 487, 548
BssMI GATC 3 cut(s) 367, 454, 577
BssNI GRCGYC 1 cut(s) 441
BssT1I CCWWGG 1 cut(s) 548
Bst4CI ACNGT 1 cut(s) 488
Bst6I CTCTTC 2 cut(s) 493, 547
BstACI GRCGYC 1 cut(s) 441
BstBI TTCGAA 1 cut(s) 79
BstC8I GCNNGC 5 cut(s) 169, 194, 274, 472, 478
BstDEI CTNAG 1 cut(s) 397
BstDSI CCRYGG 2 cut(s) 487, 548
BstENI CCTNNNNNAGG 1 cut(s) 428
BstF5I GGATG 4 cut(s) 32, 70, 143, 386
BstH2I RGCGCY 1 cut(s) 477
BstHHI GCGC 1 cut(s) 476
BstKTI GATC 3 cut(s) 370, 457, 580
BstMAI GTCTC 1 cut(s) 510
BstMBI GATC 3 cut(s) 367, 454, 577
BstMWI GCNNNNNNNGC 3 cut(s) 347, 449, 480
BstNSI RCATGY 1 cut(s) 196
BstSFI CTRYAG 1 cut(s) 104
BstV1I GCAGC 3 cut(s) 90, 151, 467
BstX2I RGATCY 1 cut(s) 367
BstYI RGATCY 1 cut(s) 367
BsuRI GGCC 1 cut(s) 272
BtgI CCRYGG 2 cut(s) 487, 548
BtsCI GGATG 4 cut(s) 32, 70, 143, 386
BtsI GCAGTG 1 cut(s) 333
BtsIMutI CAGTG 1 cut(s) 333
Cac8I GCNNGC 5 cut(s) 169, 194, 274, 472, 478
CciI TCATGA 1 cut(s) 562
CfoI GCGC 1 cut(s) 476
Cfr10I RCCGGY 1 cut(s) 470
Cfr13I GGNCC 1 cut(s) 270
CseI GACGC 1 cut(s) 449
Csp6I GTAC 4 cut(s) 18, 376, 558, 571
CviAII CATG 7 cut(s) 31, 118, 159, 193, 512, 549, 563
CviJI RGCY 8 cut(s) 122, 235, 272, 289, 350, 392, 480, 537
CviKI_1 RGCY 8 cut(s) 122, 235, 272, 289, 350, 392, 480, 537
CviQI GTAC 4 cut(s) 18, 376, 558, 571
DdeI CTNAG 1 cut(s) 397
DpnI GATC 3 cut(s) 369, 456, 579
DpnII GATC 3 cut(s) 367, 454, 577
DraI TTTAAA 1 cut(s) 73
Eam1104I CTCTTC 2 cut(s) 493, 547
EarI CTCTTC 2 cut(s) 493, 547
Eco130I CCWWGG 1 cut(s) 548
Eco31I GGTCTC 1 cut(s) 510
Eco57I CTGAAG 1 cut(s) 410
EcoNI CCTNNNNNAGG 1 cut(s) 428
EcoT14I CCWWGG 1 cut(s) 548
EcoT22I ATGCAT 3 cut(s) 32, 119, 194
ErhI CCWWGG 1 cut(s) 548
FaeI CATG 7 cut(s) 34, 121, 162, 196, 515, 552, 566
FatI CATG 7 cut(s) 30, 117, 158, 192, 511, 548, 562
Fnu4HI GCNGC 4 cut(s) 104, 165, 236, 481
FokI GGATG 4 cut(s) 39, 77, 130, 393
Fsp4HI GCNGC 4 cut(s) 104, 165, 236, 481
FspBI CTAG 2 cut(s) 129, 477
GlaI GCGC 1 cut(s) 475
GluI GCNGC 4 cut(s) 104, 165, 236, 481
HaeII RGCGCY 1 cut(s) 477
HaeIII GGCC 1 cut(s) 272
HapII CCGG 5 cut(s) 197, 227, 371, 471, 495
HgaI GACGC 1 cut(s) 449
HhaI GCGC 1 cut(s) 476
Hin1I GRCGYC 1 cut(s) 441
Hin1II CATG 7 cut(s) 34, 121, 162, 196, 515, 552, 566
Hin6I GCGC 1 cut(s) 474
HinP1I GCGC 1 cut(s) 474
HindIII AAGCTT 1 cut(s) 287
HpaII CCGG 5 cut(s) 197, 227, 371, 471, 495
Hpy166II GTNNAC 3 cut(s) 256, 331, 376
Hpy188I TCNGA 2 cut(s) 315, 429
Hpy188III TCNNGA 2 cut(s) 178, 563
Hpy8I GTNNAC 3 cut(s) 256, 331, 376
Hpy99I CGWCG 1 cut(s) 443
HpyAV CCTTC 3 cut(s) 424, 428, 434
HpyCH4III ACNGT 1 cut(s) 488
HpyCH4V TGCA 8 cut(s) 30, 106, 117, 150, 171, 192, 326, 483
HpyF10VI GCNNNNNNNGC 3 cut(s) 347, 449, 480
HpyF3I CTNAG 1 cut(s) 397
Hsp92I GRCGYC 1 cut(s) 441
Hsp92II CATG 7 cut(s) 34, 121, 162, 196, 515, 552, 566
HspAI GCGC 1 cut(s) 474
KroI GCCGGC 1 cut(s) 470
KroNI GCCGGC 1 cut(s) 472
Kzo9I GATC 3 cut(s) 367, 454, 577
LmnI GCTCC 4 cut(s) 217, 232, 309, 389
LpnPI CCDG 7 cut(s) 160, 210, 240, 286, 384, 484, 508
Lsp1109I GCAGC 3 cut(s) 90, 151, 467
LweI GCATC 3 cut(s) 17, 313, 371
MaeI CTAG 2 cut(s) 129, 477
MaeIII GTNAC 1 cut(s) 134
MalI GATC 3 cut(s) 369, 456, 579
MboI GATC 3 cut(s) 367, 454, 577
MboII GAAGA 3 cut(s) 332, 510, 534
MflI RGATCY 1 cut(s) 367
MhlI GDGCHC 1 cut(s) 306
MmeI TCCRAC 1 cut(s) 367
MnlI CCTC 8 cut(s) 46, 174, 223, 318, 346, 413, 470, 494
Mph1103I ATGCAT 3 cut(s) 32, 119, 194
MroNI GCCGGC 1 cut(s) 470
MseI TTAA 4 cut(s) 72, 96, 363, 589
MspI CCGG 5 cut(s) 197, 227, 371, 471, 495
MwoI GCNNNNNNNGC 3 cut(s) 347, 449, 480
NaeI GCCGGC 1 cut(s) 472
NcoI CCATGG 1 cut(s) 548
NdeII GATC 3 cut(s) 367, 454, 577
NgoMIV GCCGGC 1 cut(s) 470
NheI GCTAGC 1 cut(s) 476
NlaIII CATG 7 cut(s) 34, 121, 162, 196, 515, 552, 566
NlaIV GGNNCC 4 cut(s) 234, 271, 391, 493
NmeAIII GCCGAG 1 cut(s) 376
NsiI ATGCAT 3 cut(s) 32, 119, 194
NspI RCATGY 1 cut(s) 196
NspV TTCGAA 1 cut(s) 79
PaeI GCATGC 1 cut(s) 196
PagI TCATGA 1 cut(s) 562
PdiI GCCGGC 1 cut(s) 472
Pfl23II CGTACG 1 cut(s) 570
PkrI GCNGC 4 cut(s) 105, 166, 237, 482
PshBI ATTAAT 1 cut(s) 96
PspLI CGTACG 1 cut(s) 570
PspN4I GGNNCC 4 cut(s) 234, 271, 391, 493
PspPI GGNCC 1 cut(s) 270
PstI CTGCAG 1 cut(s) 108
PsuI RGATCY 1 cut(s) 367
RsaI GTAC 4 cut(s) 19, 377, 559, 572
RsaNI GTAC 4 cut(s) 18, 376, 558, 571
SaqAI TTAA 4 cut(s) 72, 96, 363, 589
SatI GCNGC 4 cut(s) 104, 165, 236, 481
Sau3AI GATC 3 cut(s) 367, 454, 577
Sau96I GGNCC 1 cut(s) 270
ScaI AGTACT 2 cut(s) 19, 559
SduI GDGCHC 1 cut(s) 306
SetI ASST 3 cut(s) 291, 482, 539
SfaNI GCATC 3 cut(s) 17, 313, 371
SfcI CTRYAG 1 cut(s) 104
SfuI TTCGAA 1 cut(s) 79
SmiI ATTTAAAT 1 cut(s) 73
SmlI CTYRAG 1 cut(s) 178
SmoI CTYRAG 1 cut(s) 178
SphI GCATGC 1 cut(s) 196
SsiI CCGC 1 cut(s) 236
SspMI CTAG 2 cut(s) 129, 477
StyI CCWWGG 1 cut(s) 548
SwaI ATTTAAAT 1 cut(s) 73
TaaI ACNGT 1 cut(s) 488
TaqI TCGA 2 cut(s) 79, 438
TatI WGTACW 2 cut(s) 17, 557
TauI GCSGC 1 cut(s) 238
Tru1I TTAA 4 cut(s) 72, 96, 363, 589
Tru9I TTAA 4 cut(s) 72, 96, 363, 589
TscAI CASTG 1 cut(s) 333
TseI GCWGC 3 cut(s) 103, 164, 480
TspDTI ATGAA 4 cut(s) 47, 81, 312, 360
TspGWI ACGGA 3 cut(s) 393, 452, 588
TspRI CASTG 1 cut(s) 333
VspI ATTAAT 1 cut(s) 96
XagI CCTNNNNNAGG 1 cut(s) 428
XapI RAATTY 5 cut(s) 35, 68, 74, 86, 520
XceI RCATGY 1 cut(s) 196
XspI CTAG 2 cut(s) 129, 477
ZrmI AGTACT 2 cut(s) 19, 559
Zsp2I ATGCAT 3 cut(s) 32, 119, 194
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.