MD17G1029300.v1.1

LOB domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
OG0013925
Physical Location & Seq
Forward (+)
2119187 .. 2121293
2107 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1029300.v1.1.491

Sequence Viewer

Length: 531 bp
ATGGCTTCATCGAGTACGAGTAGTTATACAAATTCTCCTTGTGCTGCGTGCAAGTTCTTGAGGAGAAAATGCATGCCGGATTGCATATTTGCACCCTATTTCCCACCGGAGGAGCCCCAAAAGTTTGCCAATGTTCACAAGATATTTGGTGCAAGTAATGTAAGTAAGCTTCTCAATGAAGTCCACCCCCACCAGAGAGAAGATGCGGTGAACTCTTTGGCCTACGAAGCTGAGGCTCGGATGAAAGATCCTGTCTACGGATGTGTTGGAGCCATCTCAGTGCTCCAAAGGCAAGTCATTCGCCTTCAGAAGGAGTTGGACGAGACTAATGCTGATCTCGTCCGGTATGCCAGCAGCTACAACCATGAAATATTGCTGCCAACATCTCAGTCCGAGAGGTCTAGTAGTAGTAGGGTTCGTGGAGGAGGGTCTCTAGGTCAAAATTCTGGTTCGTATTTTGATCCACCGTGGAATAGAAATGCTTATGGAGATAGAAATTATGAGAGAGGAGGAGGAGAAGGAGATATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOB

Protein Analysis

177

Amino Acids

19.52

Weight (kDa)

6.89

Isoelectric Point (pI)

56.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOB PF03195 13 - 110 1.4e-42 Lateral organ boundaries (LOB) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013925)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G27650
fragaria_vesca FvH4_6g51300 FvH4_6g51300 FvH4_6g51300
malus_domestica MD17G1029300.v1.1
prunus_persica Prupe.3G290800_v2.0.a1
pyrus_communis pycom17g02650
rosa_chinensis RchiOBHm_Chr2g0172921
rosa_laevigata RLG00000022142
rosa_multiflora Rmu_sc0009727.1_g000002
rosa_roxburghii Rroxscaffold_2G00079420
rosa_rugosa Rorug02G0563600
rosa_samantha Rh2AG640400 Rh2BG653900 Rh2CG619500 Rh2DG667500
rosa_wichuraiana Rw2G052860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 255
AciI CCGC 1 cut(s) 206
AclWI GGATC 2 cut(s) 242, 455
AcsI RAATTY 2 cut(s) 31, 442
AcuI CTGAAG 1 cut(s) 290
AfaI GTAC 1 cut(s) 16
AfiI CCNNNNNNNGG 3 cut(s) 109, 257, 310
AluBI AGCT 3 cut(s) 169, 230, 357
AluI AGCT 3 cut(s) 169, 230, 357
Alw21I GWGCWC 1 cut(s) 285
Alw26I GTCTC 2 cut(s) 317, 435
AlwI GGATC 2 cut(s) 242, 455
AoxI GGCC 1 cut(s) 219
ApeKI GCWGC 3 cut(s) 44, 354, 376
ApoI RAATTY 2 cut(s) 31, 442
AsuHPI GGTGA 1 cut(s) 220
BanII GRGCYC 1 cut(s) 117
BarI GAAGNNNNNNTAC 2 cut(s) 153, 185
Bbv12I GWGCWC 1 cut(s) 285
BbvCI CCTCAGC 1 cut(s) 231
BbvI GCAGC 3 cut(s) 31, 363, 366
BccI CCATC 1 cut(s) 281
BcgI CGANNNNNNTGC 4 cut(s) 281, 311, 315, 345
BcoDI GTCTC 2 cut(s) 317, 435
BfaI CTAG 2 cut(s) 402, 434
BisI GCNGC 3 cut(s) 45, 355, 377
BlsI GCNGC 3 cut(s) 46, 356, 378
BmiI GGNNCC 2 cut(s) 114, 271
BmsI GCATC 1 cut(s) 193
Bpu10I CCTNAGC 1 cut(s) 231
BpuEI CTTGAG 1 cut(s) 79
BsaI GGTCTC 1 cut(s) 435
BsaJI CCNNGG 1 cut(s) 467
BsaWI WCCGGW 2 cut(s) 106, 342
BsaXI ACNNNNNCTCC 2 cut(s) 19, 49
Bsc4I CCNNNNNNNGG 3 cut(s) 109, 257, 310
BseDI CCNNGG 1 cut(s) 467
BseGI GGATG 2 cut(s) 246, 266
BseLI CCNNNNNNNGG 3 cut(s) 109, 257, 310
BseMII CTCAG 3 cut(s) 222, 291, 401
BseRI GAGGAG 6 cut(s) 76, 125, 438, 522, 525, 528
BseXI GCAGC 3 cut(s) 31, 363, 366
BshFI GGCC 1 cut(s) 221
BsiHKAI GWGCWC 1 cut(s) 285
BsiSI CCGG 3 cut(s) 77, 107, 343
BslI CCNNNNNNNGG 3 cut(s) 109, 257, 310
BsmAI GTCTC 2 cut(s) 317, 435
BsnI GGCC 1 cut(s) 221
Bso31I GGTCTC 1 cut(s) 435
Bsp1286I GDGCHC 2 cut(s) 117, 285
Bsp143I GATC 3 cut(s) 247, 334, 460
BspACI CCGC 1 cut(s) 206
BspANI GGCC 1 cut(s) 221
BspCNI CTCAG 3 cut(s) 223, 290, 400
BspLI GGNNCC 2 cut(s) 114, 271
BspPI GGATC 2 cut(s) 242, 455
BspTNI GGTCTC 1 cut(s) 435
BssECI CCNNGG 1 cut(s) 467
BssMI GATC 3 cut(s) 247, 334, 460
Bst4CI ACNGT 1 cut(s) 468
BstC8I GCNNGC 3 cut(s) 49, 74, 352
BstDEI CTNAG 3 cut(s) 231, 277, 387
BstDSI CCRYGG 1 cut(s) 467
BstENI CCTNNNNNAGG 1 cut(s) 308
BstF5I GGATG 2 cut(s) 246, 266
BstKTI GATC 3 cut(s) 250, 337, 463
BstMAI GTCTC 2 cut(s) 317, 435
BstMBI GATC 3 cut(s) 247, 334, 460
BstMWI GCNNNNNNNGC 2 cut(s) 227, 289
BstNSI RCATGY 1 cut(s) 76
BstV1I GCAGC 3 cut(s) 31, 363, 366
BstX2I RGATCY 1 cut(s) 247
BstYI RGATCY 1 cut(s) 247
BsuRI GGCC 1 cut(s) 221
BtgI CCRYGG 1 cut(s) 467
BtsCI GGATG 2 cut(s) 246, 266
BtsIMutI CAGTG 1 cut(s) 285
Cac8I GCNNGC 3 cut(s) 49, 74, 352
Csp6I GTAC 1 cut(s) 15
CviAII CATG 2 cut(s) 73, 365
CviJI RGCY 8 cut(s) 5, 115, 169, 221, 230, 236, 272, 357
CviKI_1 RGCY 8 cut(s) 5, 115, 169, 221, 230, 236, 272, 357
CviQI GTAC 1 cut(s) 15
DdeI CTNAG 3 cut(s) 231, 277, 387
DpnI GATC 3 cut(s) 249, 336, 462
DpnII GATC 3 cut(s) 247, 334, 460
Eco24I GRGCYC 1 cut(s) 117
Eco31I GGTCTC 1 cut(s) 435
Eco57I CTGAAG 1 cut(s) 290
EcoNI CCTNNNNNAGG 1 cut(s) 308
EcoT22I ATGCAT 1 cut(s) 74
EcoT38I GRGCYC 1 cut(s) 117
FaeI CATG 2 cut(s) 76, 368
FaiI YATR 9 cut(s) 27, 74, 86, 348, 366, 486, 501, 527, 529
FatI CATG 2 cut(s) 72, 364
FblI GTMKAC 1 cut(s) 255
Fnu4HI GCNGC 3 cut(s) 45, 355, 377
FokI GGATG 2 cut(s) 253, 273
FriOI GRGCYC 1 cut(s) 117
Fsp4HI GCNGC 3 cut(s) 45, 355, 377
FspBI CTAG 2 cut(s) 402, 434
GluI GCNGC 3 cut(s) 45, 355, 377
HaeIII GGCC 1 cut(s) 221
HapII CCGG 3 cut(s) 77, 107, 343
Hin1II CATG 2 cut(s) 76, 368
HindIII AAGCTT 1 cut(s) 167
HpaII CCGG 3 cut(s) 77, 107, 343
HphI GGTGA 1 cut(s) 220
Hpy166II GTNNAC 4 cut(s) 136, 184, 211, 256
Hpy188I TCNGA 3 cut(s) 240, 309, 394
Hpy188III TCNNGA 1 cut(s) 58
Hpy8I GTNNAC 4 cut(s) 136, 184, 211, 256
HpyAV CCTTC 3 cut(s) 304, 314, 512
HpyCH4III ACNGT 1 cut(s) 468
HpyCH4V TGCA 5 cut(s) 51, 72, 84, 92, 152
HpyF10VI GCNNNNNNNGC 2 cut(s) 227, 289
HpyF3I CTNAG 3 cut(s) 231, 277, 387
Hsp92II CATG 2 cut(s) 76, 368
Kzo9I GATC 3 cut(s) 247, 334, 460
LmnI GCTCC 3 cut(s) 112, 269, 288
LpnPI CCDG 7 cut(s) 90, 120, 206, 264, 356, 364, 432
Lsp1109I GCAGC 3 cut(s) 31, 363, 366
LweI GCATC 1 cut(s) 193
MaeI CTAG 2 cut(s) 402, 434
MalI GATC 3 cut(s) 249, 336, 462
MboI GATC 3 cut(s) 247, 334, 460
MboII GAAGA 1 cut(s) 212
MflI RGATCY 1 cut(s) 247
MhlI GDGCHC 2 cut(s) 117, 285
MluCI AATT 3 cut(s) 31, 442, 496
MmeI TCCRAC 2 cut(s) 247, 297
MnlI CCTC 9 cut(s) 54, 103, 226, 390, 416, 419, 500, 503, 506
Mph1103I ATGCAT 1 cut(s) 74
MslI CAYNNNNRTG 1 cut(s) 278
MspI CCGG 3 cut(s) 77, 107, 343
MwoI GCNNNNNNNGC 2 cut(s) 227, 289
NdeII GATC 3 cut(s) 247, 334, 460
NlaIII CATG 2 cut(s) 76, 368
NlaIV GGNNCC 2 cut(s) 114, 271
NsiI ATGCAT 1 cut(s) 74
NspI RCATGY 1 cut(s) 76
PaeI GCATGC 1 cut(s) 76
PkrI GCNGC 3 cut(s) 46, 356, 378
PspN4I GGNNCC 2 cut(s) 114, 271
PsuI RGATCY 1 cut(s) 247
RsaI GTAC 1 cut(s) 16
RsaNI GTAC 1 cut(s) 15
RseI CAYNNNNRTG 1 cut(s) 278
SatI GCNGC 3 cut(s) 45, 355, 377
Sau3AI GATC 3 cut(s) 247, 334, 460
SduI GDGCHC 2 cut(s) 117, 285
SetI ASST 5 cut(s) 171, 232, 359, 401, 439
SfaNI GCATC 1 cut(s) 193
SmiMI CAYNNNNRTG 1 cut(s) 278
SmlI CTYRAG 1 cut(s) 58
SmoI CTYRAG 1 cut(s) 58
SphI GCATGC 1 cut(s) 76
Sse9I AATT 3 cut(s) 31, 442, 496
SsiI CCGC 1 cut(s) 206
SspI AATATT 1 cut(s) 372
SspMI CTAG 2 cut(s) 402, 434
TaaI ACNGT 1 cut(s) 468
TaqI TCGA 1 cut(s) 11
TasI AATT 3 cut(s) 31, 442, 496
TscAI CASTG 1 cut(s) 285
TseI GCWGC 3 cut(s) 44, 354, 376
TspDTI ATGAA 3 cut(s) 192, 257, 381
TspGWI ACGGA 1 cut(s) 273
TspRI CASTG 1 cut(s) 285
XagI CCTNNNNNAGG 1 cut(s) 308
XapI RAATTY 2 cut(s) 31, 442
XceI RCATGY 1 cut(s) 76
XmiI GTMKAC 1 cut(s) 255
XspI CTAG 2 cut(s) 402, 434
Zsp2I ATGCAT 1 cut(s) 74
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.