Prupe.3G290800_v2.0.a1

LOB domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0013925
Physical Location & Seq
Reverse (-)
26084384 .. 26086476
2093 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G290800.1

Sequence Viewer

Length: 528 bp
ATGGCTTCATCTAGTTCTAGTTATACGAATTCTCCTTGCGCCGCGTGCAAATTCTTGAGGAGAAAATGCATGCCGGATTGCATATTTGCTCCCTATTTCCCACCTGAGGAACCACAAAAGTTTGCAAATGTCCACAAGATATTTGGTGCCAGCAATGTAAGCAAGCTTCTGAATGAGGTGCTCCCCCATCAGAGAGAGGATGCAGTCAACTCTTTGGCCTACGAAGCGGAGGCCCGGATGAAAGATCCGGTGTACGGATGCGTAGGAGCCATCTCAGTCCTCCAAAGGCAAGTCATTCGCCTCCAGAAGGAGCTGGACGCCACAAATGCTGATCTCATCCGCTATGCAGCAAGCAGCTGCAACAATCTTGAAATTCCAATTGCATCCCAGTCCGGGAGGACTAGGACTAACAGTAATATGGGTCATGGAGGAGGGTCACTTGGTCAAAATCCTGGGTTGTATTTTTCTTCACCATGGAATAGATCAGATTCTTATGGAGGAGATAGAAACGAGAGAGGAGGAGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOB

Protein Analysis

176

Amino Acids

19.05

Weight (kDa)

8.55

Isoelectric Point (pI)

55.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013925)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G27650
fragaria_vesca FvH4_6g51300 FvH4_6g51300 FvH4_6g51300
malus_domestica MD17G1029300.v1.1
prunus_persica Prupe.3G290800_v2.0.a1
pyrus_communis pycom17g02650
rosa_chinensis RchiOBHm_Chr2g0172921
rosa_laevigata RLG00000022142
rosa_multiflora Rmu_sc0009727.1_g000002
rosa_roxburghii Rroxscaffold_2G00079420
rosa_rugosa Rorug02G0563600
rosa_samantha Rh2AG640400 Rh2BG653900 Rh2CG619500 Rh2DG667500
rosa_wichuraiana Rw2G052860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 146
AccII CGCG 1 cut(s) 44
AciI CCGC 3 cut(s) 42, 227, 340
AclWI GGATC 1 cut(s) 239
AcsI RAATTY 3 cut(s) 28, 50, 372
AcyI GRCGYC 1 cut(s) 318
AfaI GTAC 1 cut(s) 254
AfiI CCNNNNNNNGG 4 cut(s) 106, 254, 307, 393
AgsI TTSAA 1 cut(s) 371
AjnI CCWGG 1 cut(s) 451
AluBI AGCT 3 cut(s) 166, 313, 357
AluI AGCT 3 cut(s) 166, 313, 357
Alw21I GWGCWC 1 cut(s) 183
AlwI GGATC 1 cut(s) 239
AoxI GGCC 2 cut(s) 216, 231
ApeKI GCWGC 3 cut(s) 347, 354, 357
ApoI RAATTY 3 cut(s) 28, 50, 372
AspLEI GCGC 1 cut(s) 41
AspS9I GGNCC 1 cut(s) 232
AsuC2I CCSGG 2 cut(s) 235, 394
AsuHPI GGTGA 1 cut(s) 462
AxyI CCTNAGG 1 cut(s) 105
BanI GGYRCC 1 cut(s) 146
BarI GAAGNNNNNNTAC 2 cut(s) 150, 182
Bbv12I GWGCWC 1 cut(s) 183
BbvI GCAGC 3 cut(s) 344, 359, 366
BccI CCATC 2 cut(s) 195, 278
BcgI CGANNNNNNTGC 2 cut(s) 278, 312
BciT130I CCWGG 1 cut(s) 453
BcnI CCSGG 2 cut(s) 235, 394
BfaI CTAG 3 cut(s) 12, 18, 402
BisI GCNGC 4 cut(s) 42, 348, 355, 358
BlsI GCNGC 4 cut(s) 43, 349, 356, 359
Bme1390I CCNGG 3 cut(s) 235, 394, 453
BmgT120I GGNCC 1 cut(s) 232
BmiI GGNNCC 3 cut(s) 111, 148, 268
BmrFI CCNGG 3 cut(s) 235, 394, 453
BmrI ACTGGG 1 cut(s) 382
BmsI GCATC 3 cut(s) 190, 248, 392
BmuI ACTGGG 1 cut(s) 382
BpmI CTGGAG 1 cut(s) 287
BpuEI CTTGAG 1 cut(s) 76
BpuMI CCSGG 2 cut(s) 235, 394
BsaHI GRCGYC 1 cut(s) 318
BsaJI CCNNGG 2 cut(s) 452, 473
BsaWI WCCGGW 1 cut(s) 247
BsaXI ACNNNNNCTCC 2 cut(s) 16, 46
Bsc4I CCNNNNNNNGG 4 cut(s) 106, 254, 307, 393
Bse1I ACTGG 1 cut(s) 388
Bse21I CCTNAGG 1 cut(s) 105
Bse3DI GCAATG 1 cut(s) 160
BseBI CCWGG 1 cut(s) 453
BseDI CCNNGG 2 cut(s) 452, 473
BseGI GGATG 5 cut(s) 205, 243, 263, 336, 383
BseLI CCNNNNNNNGG 4 cut(s) 106, 254, 307, 393
BseMI GCAATG 1 cut(s) 160
BseMII CTCAG 2 cut(s) 96, 288
BseNI ACTGG 1 cut(s) 388
BseRI GAGGAG 3 cut(s) 73, 444, 513
BseXI GCAGC 3 cut(s) 344, 359, 366
Bsh1236I CGCG 1 cut(s) 44
BshFI GGCC 2 cut(s) 218, 233
BshNI GGYRCC 1 cut(s) 146
BsiHKAI GWGCWC 1 cut(s) 183
BsiSI CCGG 4 cut(s) 74, 235, 248, 393
BslI CCNNNNNNNGG 4 cut(s) 106, 254, 307, 393
BsnI GGCC 2 cut(s) 218, 233
Bsp1286I GDGCHC 1 cut(s) 183
Bsp143I GATC 3 cut(s) 244, 331, 482
Bsp19I CCATGG 1 cut(s) 473
BspACI CCGC 3 cut(s) 42, 227, 340
BspANI GGCC 2 cut(s) 218, 233
BspCNI CTCAG 2 cut(s) 97, 287
BspFNI CGCG 1 cut(s) 44
BspLI GGNNCC 3 cut(s) 111, 148, 268
BspPI GGATC 1 cut(s) 239
BspT107I GGYRCC 1 cut(s) 146
BsrDI GCAATG 1 cut(s) 160
BsrI ACTGG 1 cut(s) 388
BssECI CCNNGG 2 cut(s) 452, 473
BssMI GATC 3 cut(s) 244, 331, 482
BssNI GRCGYC 1 cut(s) 318
BssT1I CCWWGG 1 cut(s) 473
Bst2UI CCWGG 1 cut(s) 453
Bst4CI ACNGT 1 cut(s) 413
BstACI GRCGYC 1 cut(s) 318
BstC8I GCNNGC 5 cut(s) 46, 71, 151, 164, 352
BstDEI CTNAG 2 cut(s) 105, 274
BstDSI CCRYGG 1 cut(s) 473
BstENI CCTNNNNNAGG 1 cut(s) 305
BstF5I GGATG 5 cut(s) 205, 243, 263, 336, 383
BstFNI CGCG 1 cut(s) 44
BstHHI GCGC 1 cut(s) 41
BstKTI GATC 3 cut(s) 247, 334, 485
BstMBI GATC 3 cut(s) 244, 331, 482
BstMWI GCNNNNNNNGC 4 cut(s) 45, 159, 224, 326
BstNI CCWGG 1 cut(s) 453
BstNSI RCATGY 1 cut(s) 73
BstSCI CCNGG 3 cut(s) 233, 392, 451
BstUI CGCG 1 cut(s) 44
BstV1I GCAGC 3 cut(s) 344, 359, 366
BstX2I RGATCY 1 cut(s) 244
BstYI RGATCY 1 cut(s) 244
Bsu36I CCTNAGG 1 cut(s) 105
BsuRI GGCC 2 cut(s) 218, 233
BtgI CCRYGG 1 cut(s) 473
BtsCI GGATG 5 cut(s) 205, 243, 263, 336, 383
Cac8I GCNNGC 5 cut(s) 46, 71, 151, 164, 352
CfoI GCGC 1 cut(s) 41
Cfr13I GGNCC 1 cut(s) 232
CseI GACGC 1 cut(s) 326
Csp6I GTAC 1 cut(s) 253
CviAII CATG 3 cut(s) 70, 425, 474
CviJI RGCY 7 cut(s) 5, 166, 218, 233, 269, 313, 357
CviKI_1 RGCY 7 cut(s) 5, 166, 218, 233, 269, 313, 357
CviQI GTAC 1 cut(s) 253
DdeI CTNAG 2 cut(s) 105, 274
DpnI GATC 3 cut(s) 246, 333, 484
DpnII GATC 3 cut(s) 244, 331, 482
Eco130I CCWWGG 1 cut(s) 473
Eco81I CCTNAGG 1 cut(s) 105
EcoNI CCTNNNNNAGG 1 cut(s) 305
EcoRI GAATTC 1 cut(s) 28
EcoRII CCWGG 1 cut(s) 451
EcoT14I CCWWGG 1 cut(s) 473
EcoT22I ATGCAT 1 cut(s) 71
ErhI CCWWGG 1 cut(s) 473
FaeI CATG 3 cut(s) 73, 428, 477
FaiI YATR 8 cut(s) 24, 71, 83, 345, 419, 426, 475, 495
FatI CATG 3 cut(s) 69, 424, 473
Fnu4HI GCNGC 4 cut(s) 42, 348, 355, 358
FokI GGATG 5 cut(s) 212, 250, 270, 323, 370
Fsp4HI GCNGC 4 cut(s) 42, 348, 355, 358
FspBI CTAG 3 cut(s) 12, 18, 402
GlaI GCGC 1 cut(s) 40
GluI GCNGC 4 cut(s) 42, 348, 355, 358
GsuI CTGGAG 1 cut(s) 287
HaeIII GGCC 2 cut(s) 218, 233
HapII CCGG 4 cut(s) 74, 235, 248, 393
HgaI GACGC 1 cut(s) 326
HhaI GCGC 1 cut(s) 41
Hin1I GRCGYC 1 cut(s) 318
Hin1II CATG 3 cut(s) 73, 428, 477
Hin6I GCGC 1 cut(s) 39
HinP1I GCGC 1 cut(s) 39
HincII GTYRAC 1 cut(s) 208
HindII GTYRAC 1 cut(s) 208
HindIII AAGCTT 1 cut(s) 164
HinfI GANTC 1 cut(s) 488
HpaII CCGG 4 cut(s) 74, 235, 248, 393
HphI GGTGA 1 cut(s) 462
Hpy166II GTNNAC 3 cut(s) 133, 208, 253
Hpy188I TCNGA 3 cut(s) 171, 192, 487
Hpy188III TCNNGA 3 cut(s) 55, 304, 368
Hpy8I GTNNAC 3 cut(s) 133, 208, 253
HpyAV CCTTC 1 cut(s) 301
HpyCH4III ACNGT 1 cut(s) 413
HpyCH4V TGCA 8 cut(s) 48, 69, 81, 125, 203, 347, 360, 383
HpyF10VI GCNNNNNNNGC 4 cut(s) 45, 159, 224, 326
HpyF3I CTNAG 2 cut(s) 105, 274
Hsp92I GRCGYC 1 cut(s) 318
Hsp92II CATG 3 cut(s) 73, 428, 477
HspAI GCGC 1 cut(s) 39
Kzo9I GATC 3 cut(s) 244, 331, 482
LmnI GCTCC 4 cut(s) 94, 186, 266, 310
Lsp1109I GCAGC 3 cut(s) 344, 359, 366
LweI GCATC 3 cut(s) 190, 248, 392
MaeI CTAG 3 cut(s) 12, 18, 402
MaeIII GTNAC 1 cut(s) 435
MalI GATC 3 cut(s) 246, 333, 484
MboI GATC 3 cut(s) 244, 331, 482
MboII GAAGA 1 cut(s) 459
MfeI CAATTG 1 cut(s) 378
MflI RGATCY 1 cut(s) 244
MhlI GDGCHC 1 cut(s) 183
MluCI AATT 4 cut(s) 28, 50, 372, 378
Mph1103I ATGCAT 1 cut(s) 71
MspA1I CMGCKG 1 cut(s) 357
MspI CCGG 4 cut(s) 74, 235, 248, 393
MspR9I CCNGG 3 cut(s) 235, 394, 453
MunI CAATTG 1 cut(s) 378
MvaI CCWGG 1 cut(s) 453
MvnI CGCG 1 cut(s) 44
MwoI GCNNNNNNNGC 4 cut(s) 45, 159, 224, 326
NciI CCSGG 2 cut(s) 235, 394
NcoI CCATGG 1 cut(s) 473
NdeII GATC 3 cut(s) 244, 331, 482
NlaIII CATG 3 cut(s) 73, 428, 477
NlaIV GGNNCC 3 cut(s) 111, 148, 268
NmuCI GTSAC 1 cut(s) 435
NsiI ATGCAT 1 cut(s) 71
NspI RCATGY 1 cut(s) 73
PaeI GCATGC 1 cut(s) 73
PfeI GAWTC 1 cut(s) 488
PfoI TCCNGGA 1 cut(s) 392
PkrI GCNGC 4 cut(s) 43, 349, 356, 359
Psp6I CCWGG 1 cut(s) 451
PspGI CCWGG 1 cut(s) 451
PspN4I GGNNCC 3 cut(s) 111, 148, 268
PspPI GGNCC 1 cut(s) 232
PsuI RGATCY 1 cut(s) 244
PvuII CAGCTG 1 cut(s) 357
RsaI GTAC 1 cut(s) 254
RsaNI GTAC 1 cut(s) 253
SatI GCNGC 4 cut(s) 42, 348, 355, 358
Sau3AI GATC 3 cut(s) 244, 331, 482
Sau96I GGNCC 1 cut(s) 232
ScrFI CCNGG 3 cut(s) 235, 394, 453
SduI GDGCHC 1 cut(s) 183
SetI ASST 5 cut(s) 106, 168, 180, 315, 359
SfaNI GCATC 3 cut(s) 190, 248, 392
SmlI CTYRAG 1 cut(s) 55
SmoI CTYRAG 1 cut(s) 55
SphI GCATGC 1 cut(s) 73
Sse9I AATT 4 cut(s) 28, 50, 372, 378
SsiI CCGC 3 cut(s) 42, 227, 340
SspMI CTAG 3 cut(s) 12, 18, 402
StyD4I CCNGG 3 cut(s) 233, 392, 451
StyI CCWWGG 1 cut(s) 473
TaaI ACNGT 1 cut(s) 413
TasI AATT 4 cut(s) 28, 50, 372, 378
TauI GCSGC 1 cut(s) 44
TfiI GAWTC 1 cut(s) 488
TseFI GTSAC 1 cut(s) 435
TseI GCWGC 3 cut(s) 347, 354, 357
Tsp45I GTSAC 1 cut(s) 435
TspDTI ATGAA 1 cut(s) 254
TspGWI ACGGA 1 cut(s) 270
XagI CCTNNNNNAGG 1 cut(s) 305
XapI RAATTY 3 cut(s) 28, 50, 372
XceI RCATGY 1 cut(s) 73
XcmI CCANNNNNNNNNTGG 1 cut(s) 140
XspI CTAG 3 cut(s) 12, 18, 402
Zsp2I ATGCAT 1 cut(s) 71
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.