FvH4_6g51361

Belongs to the Frigida family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0016907
Physical Location & Seq
Reverse (-)
38082258 .. 38083467
1210 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g51361.t1

Sequence Viewer

Length: 483 bp
ATGGCTGTGAATGGTAAAATAGCTGAGCTAAGAGCTGCCTTACAGTGCATGAAAGATTACAACCTCGAGTCTGAATACTCGAAGATTGTTGAAAACCAAATAGTTCAGCTTGAAATGCTCAAGAAAAAATGGAGAAGTTCGGCACCCAAAGTTGAACAAGAAGAGAGAAAAAGAAAGAACCCTTGTCCTAGCTCTTCTACCCCGAAGTTGCAACCAGGAAAAGTTAGAGTGGACAGCACTAGTTGCAGTAGGATAACTACCTCCTCCAAGTGCAGCAAGTCTGTCCAGTTTGCCTCAATTGGCTTAGTGAACATTCTCCACACCGGAGGTGGTGTCAAGTCTTTGGTTTACGGTGAGGAGGGGAACTCTGTTCAAATTGGGGAGAAGGGCACCGGAGAGATGAGGGTGTTTGCCTCTGAGAAGCCACTAGGTTGCAGGATTGATGGAAGCACGTTGCTTTTGAGTATGAAGAGAACATGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Frigida

Protein Analysis

161

Amino Acids

17.61

Weight (kDa)

9.53

Isoelectric Point (pI)

37.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Raffinose_syn PF05691 92 - 151 8.4e-12 Raffinose synthase or seed imbibition protein Sip1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 142, 389
AgsI TTSAA 4 cut(s) 92, 113, 155, 374
AhlI ACTAGT 1 cut(s) 239
AjnI CCWGG 1 cut(s) 214
AluBI AGCT 5 cut(s) 23, 28, 35, 109, 192
AluI AGCT 5 cut(s) 23, 28, 35, 109, 192
Ama87I CYCGRG 1 cut(s) 65
ApeKI GCWGC 2 cut(s) 35, 273
AsuHPI GGTGA 1 cut(s) 365
AvaI CYCGRG 1 cut(s) 65
BaeGI GKGCMC 1 cut(s) 392
BanI GGYRCC 2 cut(s) 142, 389
BbvI GCAGC 2 cut(s) 22, 285
BccI CCATC 1 cut(s) 437
BciT130I CCWGG 1 cut(s) 216
BcuI ACTAGT 1 cut(s) 239
BfaI CTAG 3 cut(s) 189, 240, 428
BisI GCNGC 2 cut(s) 36, 274
BlpI GCTNAGC 1 cut(s) 24
BlsI GCNGC 2 cut(s) 37, 275
Bme1390I CCNGG 1 cut(s) 216
BmeT110I CYCGRG 1 cut(s) 65
BmiI GGNNCC 2 cut(s) 144, 391
BmrFI CCNGG 1 cut(s) 216
BplI GAGNNNNNCTC 2 cut(s) 350, 382
Bpu1102I GCTNAGC 1 cut(s) 24
BpuEI CTTGAG 1 cut(s) 104
BsaWI WCCGGW 2 cut(s) 323, 392
BsaXI ACNNNNNCTCC 2 cut(s) 318, 348
Bse1I ACTGG 1 cut(s) 286
BseBI CCWGG 1 cut(s) 216
BseMII CTCAG 2 cut(s) 15, 408
BseNI ACTGG 1 cut(s) 286
BseRI GAGGAG 2 cut(s) 253, 371
BseSI GKGCMC 1 cut(s) 392
BseXI GCAGC 2 cut(s) 22, 285
BsgI GTGCAG 1 cut(s) 292
BshNI GGYRCC 2 cut(s) 142, 389
BsiHKCI CYCGRG 1 cut(s) 65
BsiSI CCGG 2 cut(s) 324, 393
BsoBI CYCGRG 1 cut(s) 65
Bsp1286I GDGCHC 1 cut(s) 392
Bsp1720I GCTNAGC 1 cut(s) 24
BspCNI CTCAG 2 cut(s) 16, 409
BspLI GGNNCC 2 cut(s) 144, 391
BspQI GCTCTTC 1 cut(s) 199
BspT107I GGYRCC 2 cut(s) 142, 389
BsrI ACTGG 1 cut(s) 286
Bst2UI CCWGG 1 cut(s) 216
Bst4CI ACNGT 2 cut(s) 45, 353
Bst6I CTCTTC 3 cut(s) 156, 199, 464
BstAPI GCANNNNNTGC 1 cut(s) 243
BstDEI CTNAG 4 cut(s) 24, 29, 304, 417
BstMWI GCNNNNNNNGC 2 cut(s) 115, 243
BstNI CCWGG 1 cut(s) 216
BstSCI CCNGG 1 cut(s) 214
BstSLI GKGCMC 1 cut(s) 392
BstV1I GCAGC 2 cut(s) 22, 285
BtsIMutI CAGTG 1 cut(s) 50
CviAII CATG 2 cut(s) 49, 477
CviJI RGCY 8 cut(s) 5, 23, 28, 35, 109, 192, 303, 424
CviKI_1 RGCY 8 cut(s) 5, 23, 28, 35, 109, 192, 303, 424
DdeI CTNAG 4 cut(s) 24, 29, 304, 417
Eam1104I CTCTTC 3 cut(s) 156, 199, 464
EarI CTCTTC 3 cut(s) 156, 199, 464
Eco88I CYCGRG 1 cut(s) 65
EcoRII CCWGG 1 cut(s) 214
FaeI CATG 2 cut(s) 52, 480
FaiI YATR 3 cut(s) 50, 467, 478
FatI CATG 2 cut(s) 48, 476
Fnu4HI GCNGC 2 cut(s) 36, 274
Fsp4HI GCNGC 2 cut(s) 36, 274
FspBI CTAG 3 cut(s) 189, 240, 428
GluI GCNGC 2 cut(s) 36, 274
HapII CCGG 2 cut(s) 324, 393
Hin1II CATG 2 cut(s) 52, 480
HinfI GANTC 1 cut(s) 68
HpaII CCGG 2 cut(s) 324, 393
HphI GGTGA 1 cut(s) 365
Hpy166II GTNNAC 3 cut(s) 232, 310, 349
Hpy188I TCNGA 2 cut(s) 73, 418
Hpy188III TCNNGA 1 cut(s) 121
Hpy8I GTNNAC 3 cut(s) 232, 310, 349
HpyAV CCTTC 1 cut(s) 379
HpyCH4III ACNGT 2 cut(s) 45, 353
HpyCH4IV ACGT 1 cut(s) 452
HpyCH4V TGCA 5 cut(s) 48, 211, 246, 273, 435
HpyF10VI GCNNNNNNNGC 2 cut(s) 115, 243
HpyF3I CTNAG 4 cut(s) 24, 29, 304, 417
HpySE526I ACGT 1 cut(s) 452
Hsp92II CATG 2 cut(s) 52, 480
LguI GCTCTTC 1 cut(s) 199
LpnPI CCDG 6 cut(s) 201, 228, 299, 337, 406, 421
Lsp1109I GCAGC 2 cut(s) 22, 285
MaeI CTAG 3 cut(s) 189, 240, 428
MaeII ACGT 1 cut(s) 452
MboII GAAGA 4 cut(s) 94, 173, 186, 481
MfeI CAATTG 1 cut(s) 297
MhlI GDGCHC 1 cut(s) 392
MluCI AATT 2 cut(s) 297, 375
MlyI GAGTC 1 cut(s) 77
MnlI CCTC 9 cut(s) 74, 271, 274, 304, 320, 349, 352, 396, 424
MspI CCGG 2 cut(s) 324, 393
MspR9I CCNGG 1 cut(s) 216
MunI CAATTG 1 cut(s) 297
MvaI CCWGG 1 cut(s) 216
MwoI GCNNNNNNNGC 2 cut(s) 115, 243
NlaIII CATG 2 cut(s) 52, 480
NlaIV GGNNCC 2 cut(s) 144, 391
PaeR7I CTCGAG 1 cut(s) 65
PciSI GCTCTTC 1 cut(s) 199
PkrI GCNGC 2 cut(s) 37, 275
PleI GAGTC 1 cut(s) 76
PpsI GAGTC 1 cut(s) 76
Psp6I CCWGG 1 cut(s) 214
PspGI CCWGG 1 cut(s) 214
PspN4I GGNNCC 2 cut(s) 144, 391
PspXI VCTCGAGB 1 cut(s) 65
SapI GCTCTTC 1 cut(s) 199
SatI GCNGC 2 cut(s) 36, 274
SchI GAGTC 1 cut(s) 77
ScrFI CCNGG 1 cut(s) 216
SduI GDGCHC 1 cut(s) 392
Sfr274I CTCGAG 1 cut(s) 65
SlaI CTCGAG 1 cut(s) 65
SmlI CTYRAG 2 cut(s) 65, 119
SmoI CTYRAG 2 cut(s) 65, 119
SpeI ACTAGT 1 cut(s) 239
Sse9I AATT 2 cut(s) 297, 375
SspMI CTAG 3 cut(s) 189, 240, 428
StyD4I CCNGG 1 cut(s) 214
TaaI ACNGT 2 cut(s) 45, 353
TaiI ACGT 1 cut(s) 455
TaqI TCGA 2 cut(s) 66, 80
TasI AATT 2 cut(s) 297, 375
TscAI CASTG 1 cut(s) 50
TseI GCWGC 2 cut(s) 35, 273
TspDTI ATGAA 2 cut(s) 65, 482
TspRI CASTG 1 cut(s) 50
XcmI CCANNNNNNNNNTGG 1 cut(s) 326
XhoI CTCGAG 1 cut(s) 65
XspI CTAG 3 cut(s) 189, 240, 428
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.