RchiOBHm_Chr2g0124201

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0016907
Physical Location & Seq
Reverse (-)
37530484 .. 37532213
1730 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ49643

Sequence Viewer

Length: 645 bp
ATGAAATTCTTTTGGAATCATTTGGAGAATCAATACAAAAAGACAGAGAGCATTTGGATTTGGTCCAAATGTTGGCAGCCGAGCGTGAAAAGCAGTTGGATTCACTCCAAACATTGGTGCAACATCGTGAAAACAATTTGTTTTCACTTCAAAAATCAGTACAAGAGCGTGAAAAAAAGTTGGATTCACTATCCGATGGACTTCAAAGGAGAGAAAGGGAACTTGAAAAGCAGGCCAAAGATCGAGCTTGAATTGAAGCAGAGACAATTTGATTCTCAAAGGAAGGCTAAGCATTTGGAACCTACCTCTGCTGCTAAAAATGCTAGTGTTGTTTCATCTACAAGAGATCAATCCTGGAACAACATGGATGGTAGAAGCTTACAGTTGGTCATGAATGAGCAAGTGGAAAAAATTGACTTGACAGGTAGCCGAATGTCAGCTGTTCTACAAGCATCATCAGACCCCACAAAATTGGTCTTGGATTCAATGCAAGGGTTTTATCCGTCAAATCTTACTGTGGAAAACAGAGAGTTTGAGTCACATTATCCTCAGGTGAGAGAAGAAGCAGTGAAATTGGCAGTTACCGCTGATAATAGTTGGGACTTGGGAGGCTTTGGGCTTTTTGCGTCTTATCACTACGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04530 map04530
Pfam Domains
Protein Families
Frigida TEX13

Protein Analysis

214

Amino Acids

25.02

Weight (kDa)

9.32

Isoelectric Point (pI)

45.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Frigida PF07899 113 - 186 4e-08 Frigida-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 72, 114
AciI CCGC 1 cut(s) 585
AcsI RAATTY 1 cut(s) 5
AfaI GTAC 1 cut(s) 161
AfiI CCNNNNNNNGG 2 cut(s) 72, 114
AgsI TTSAA 6 cut(s) 151, 205, 226, 251, 256, 486
AjnI CCWGG 1 cut(s) 353
AluBI AGCT 3 cut(s) 247, 378, 440
AluI AGCT 3 cut(s) 247, 378, 440
Alw26I GTCTC 1 cut(s) 256
AoxI GGCC 1 cut(s) 233
ApeKI GCWGC 2 cut(s) 76, 311
ApoI RAATTY 1 cut(s) 5
AspS9I GGNCC 1 cut(s) 63
AsuHPI GGTGA 1 cut(s) 565
AvaII GGWCC 1 cut(s) 63
AxyI CCTNAGG 1 cut(s) 549
BbvI GCAGC 2 cut(s) 88, 298
BccI CCATC 2 cut(s) 190, 362
BciT130I CCWGG 1 cut(s) 355
BcoDI GTCTC 1 cut(s) 256
BfaI CTAG 1 cut(s) 324
BisI GCNGC 2 cut(s) 77, 312
BlpI GCTNAGC 1 cut(s) 288
BlsI GCNGC 2 cut(s) 78, 313
Bme1390I CCNGG 1 cut(s) 355
Bme18I GGWCC 1 cut(s) 63
BmgT120I GGNCC 1 cut(s) 63
BmiI GGNNCC 1 cut(s) 300
BmrFI CCNGG 1 cut(s) 355
BmsI GCATC 1 cut(s) 461
Bpu1102I GCTNAGC 1 cut(s) 288
BsaAI YACGTR 1 cut(s) 640
Bsc4I CCNNNNNNNGG 2 cut(s) 72, 114
Bse21I CCTNAGG 1 cut(s) 549
BseBI CCWGG 1 cut(s) 355
BseGI GGATG 1 cut(s) 373
BseLI CCNNNNNNNGG 2 cut(s) 72, 114
BseMII CTCAG 1 cut(s) 563
BseXI GCAGC 2 cut(s) 88, 298
BshFI GGCC 1 cut(s) 235
BslFI GGGAC 1 cut(s) 614
BslI CCNNNNNNNGG 2 cut(s) 72, 114
BsmAI GTCTC 1 cut(s) 256
BsmFI GGGAC 1 cut(s) 614
BsnI GGCC 1 cut(s) 235
Bsp143I GATC 2 cut(s) 240, 346
Bsp1720I GCTNAGC 1 cut(s) 288
BspACI CCGC 1 cut(s) 585
BspANI GGCC 1 cut(s) 235
BspCNI CTCAG 1 cut(s) 562
BspHI TCATGA 1 cut(s) 390
BspLI GGNNCC 1 cut(s) 300
BssMI GATC 2 cut(s) 240, 346
Bst2UI CCWGG 1 cut(s) 355
Bst4CI ACNGT 2 cut(s) 384, 517
BstBAI YACGTR 1 cut(s) 640
BstC8I GCNNGC 1 cut(s) 233
BstDEI CTNAG 2 cut(s) 288, 549
BstF5I GGATG 1 cut(s) 373
BstKTI GATC 2 cut(s) 243, 349
BstMAI GTCTC 1 cut(s) 256
BstMBI GATC 2 cut(s) 240, 346
BstMWI GCNNNNNNNGC 3 cut(s) 90, 320, 584
BstNI CCWGG 1 cut(s) 355
BstSCI CCNGG 1 cut(s) 353
BstSNI TACGTA 1 cut(s) 640
BstV1I GCAGC 2 cut(s) 88, 298
BstXI CCANNNNNNTGG 1 cut(s) 472
Bsu36I CCTNAGG 1 cut(s) 549
BsuRI GGCC 1 cut(s) 235
BtsCI GGATG 1 cut(s) 373
BtsI GCAGTG 1 cut(s) 573
BtsIMutI CAGTG 1 cut(s) 573
Cac8I GCNNGC 1 cut(s) 233
CciI TCATGA 1 cut(s) 390
Cfr13I GGNCC 1 cut(s) 63
CseI GACGC 1 cut(s) 615
Csp6I GTAC 1 cut(s) 160
CviAII CATG 2 cut(s) 364, 391
CviJI RGCY 9 cut(s) 79, 235, 247, 287, 378, 429, 440, 612, 619
CviKI_1 RGCY 9 cut(s) 79, 235, 247, 287, 378, 429, 440, 612, 619
CviQI GTAC 1 cut(s) 160
DdeI CTNAG 2 cut(s) 288, 549
DpnI GATC 2 cut(s) 242, 348
DpnII GATC 2 cut(s) 240, 346
Eco105I TACGTA 1 cut(s) 640
Eco47I GGWCC 1 cut(s) 63
Eco81I CCTNAGG 1 cut(s) 549
EcoRII CCWGG 1 cut(s) 353
FaeI CATG 2 cut(s) 367, 394
FaiI YATR 3 cut(s) 365, 392, 643
FaqI GGGAC 1 cut(s) 614
FatI CATG 2 cut(s) 363, 390
Fnu4HI GCNGC 2 cut(s) 77, 312
FokI GGATG 1 cut(s) 380
Fsp4HI GCNGC 2 cut(s) 77, 312
FspBI CTAG 1 cut(s) 324
GluI GCNGC 2 cut(s) 77, 312
HaeIII GGCC 1 cut(s) 235
HgaI GACGC 1 cut(s) 615
Hin1II CATG 2 cut(s) 367, 394
HindIII AAGCTT 1 cut(s) 376
HinfI GANTC 7 cut(s) 16, 28, 100, 184, 272, 482, 536
HphI GGTGA 1 cut(s) 565
Hpy188I TCNGA 2 cut(s) 195, 460
Hpy188III TCNNGA 2 cut(s) 127, 391
HpyAV CCTTC 1 cut(s) 277
HpyCH4III ACNGT 2 cut(s) 384, 517
HpyCH4IV ACGT 1 cut(s) 639
HpyCH4V TGCA 2 cut(s) 120, 490
HpyF10VI GCNNNNNNNGC 3 cut(s) 90, 320, 584
HpyF3I CTNAG 2 cut(s) 288, 549
HpySE526I ACGT 1 cut(s) 639
Hsp92II CATG 2 cut(s) 367, 394
Kzo9I GATC 2 cut(s) 240, 346
LpnPI CCDG 5 cut(s) 217, 340, 367, 408, 536
Lsp1109I GCAGC 2 cut(s) 88, 298
LweI GCATC 1 cut(s) 461
MaeI CTAG 1 cut(s) 324
MaeII ACGT 1 cut(s) 639
MaeIII GTNAC 2 cut(s) 537, 580
MalI GATC 2 cut(s) 242, 348
MboI GATC 2 cut(s) 240, 346
MboII GAAGA 1 cut(s) 572
MluCI AATT 7 cut(s) 5, 135, 251, 266, 411, 470, 572
MlyI GAGTC 1 cut(s) 545
MmeI TCCRAC 2 cut(s) 77, 161
MnlI CCTC 3 cut(s) 316, 558, 602
MspA1I CMGCKG 2 cut(s) 440, 587
MspR9I CCNGG 1 cut(s) 355
MvaI CCWGG 1 cut(s) 355
MwoI GCNNNNNNNGC 3 cut(s) 90, 320, 584
NdeII GATC 2 cut(s) 240, 346
NlaIII CATG 2 cut(s) 367, 394
NlaIV GGNNCC 1 cut(s) 300
NmeAIII GCCGAG 1 cut(s) 105
NmuCI GTSAC 1 cut(s) 537
PagI TCATGA 1 cut(s) 390
PfeI GAWTC 6 cut(s) 16, 28, 100, 184, 272, 482
PflMI CCANNNNNTGG 2 cut(s) 72, 114
PfoI TCCNGGA 1 cut(s) 353
PkrI GCNGC 2 cut(s) 78, 313
PleI GAGTC 1 cut(s) 544
PpsI GAGTC 1 cut(s) 544
Ppu21I YACGTR 1 cut(s) 640
Psp6I CCWGG 1 cut(s) 353
PspGI CCWGG 1 cut(s) 353
PspN4I GGNNCC 1 cut(s) 300
PspPI GGNCC 1 cut(s) 63
PvuII CAGCTG 1 cut(s) 440
RsaI GTAC 1 cut(s) 161
RsaNI GTAC 1 cut(s) 160
SatI GCNGC 2 cut(s) 77, 312
Sau3AI GATC 2 cut(s) 240, 346
Sau96I GGNCC 1 cut(s) 63
SchI GAGTC 1 cut(s) 545
ScrFI CCNGG 1 cut(s) 355
SetI ASST 8 cut(s) 249, 304, 308, 380, 427, 442, 555, 642
SfaNI GCATC 1 cut(s) 461
SinI GGWCC 1 cut(s) 63
SnaBI TACGTA 1 cut(s) 640
Sse9I AATT 7 cut(s) 5, 135, 251, 266, 411, 470, 572
SsiI CCGC 1 cut(s) 585
SspMI CTAG 1 cut(s) 324
StyD4I CCNGG 1 cut(s) 353
TaaI ACNGT 2 cut(s) 384, 517
TaiI ACGT 1 cut(s) 642
TaqI TCGA 1 cut(s) 243
TasI AATT 7 cut(s) 5, 135, 251, 266, 411, 470, 572
TatI WGTACW 1 cut(s) 159
TfiI GAWTC 6 cut(s) 16, 28, 100, 184, 272, 482
TscAI CASTG 1 cut(s) 573
TseFI GTSAC 1 cut(s) 537
TseI GCWGC 2 cut(s) 76, 311
Tsp45I GTSAC 1 cut(s) 537
TspDTI ATGAA 3 cut(s) 17, 324, 407
TspGWI ACGGA 1 cut(s) 492
TspRI CASTG 1 cut(s) 573
Van91I CCANNNNNTGG 2 cut(s) 72, 114
VpaK11BI GGWCC 1 cut(s) 63
XapI RAATTY 1 cut(s) 5
XspI CTAG 1 cut(s) 324
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.