Rh2CG295300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0016907
Physical Location & Seq
Reverse (-)
33880841 .. 33881122
282 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG295300.1

Sequence Viewer

Length: 282 bp
ATGGATGGTAGAAGCTTACAGTTGGTCATGAATGAGCAAGCGGAAAAAATTGACTTGACAGGTAGCCGAATGTCAGCTGTTCTACAAGCATCATCAGACCCCGCAAAATTGGTCTTGGATTCAATGCAAGGGTTTTATCCGTCAAATCTTACTGTGGAAAACAGAGAGTTTGAGTCACATTATCCTCAGGTGAGAGAAGAAGCAGTGAAATTGGCAGTTACCGCTGATAATAGTTGGGACTTGGGAGGCTTTGGGCTTTTTGCGTCTTATCACTACGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04530 map04530
Pfam Domains
Protein Families
Frigida TEX13

Protein Analysis

93

Amino Acids

10.36

Weight (kDa)

4.63

Isoelectric Point (pI)

57.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Frigida PF07899 1 - 65 3e-08 Frigida-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 41, 102, 222
AgsI TTSAA 1 cut(s) 123
AluBI AGCT 2 cut(s) 15, 77
AluI AGCT 2 cut(s) 15, 77
AsuHPI GGTGA 1 cut(s) 202
AxyI CCTNAGG 1 cut(s) 186
BmsI GCATC 1 cut(s) 98
BsaAI YACGTR 1 cut(s) 277
Bse21I CCTNAGG 1 cut(s) 186
BseGI GGATG 1 cut(s) 10
BseMII CTCAG 1 cut(s) 200
BslFI GGGAC 1 cut(s) 251
BsmFI GGGAC 1 cut(s) 251
BspACI CCGC 3 cut(s) 41, 102, 222
BspCNI CTCAG 1 cut(s) 199
BspHI TCATGA 1 cut(s) 27
Bst4CI ACNGT 2 cut(s) 21, 154
BstBAI YACGTR 1 cut(s) 277
BstC8I GCNNGC 1 cut(s) 39
BstDEI CTNAG 1 cut(s) 186
BstF5I GGATG 1 cut(s) 10
BstMWI GCNNNNNNNGC 1 cut(s) 221
BstSNI TACGTA 1 cut(s) 277
Bsu36I CCTNAGG 1 cut(s) 186
BtsCI GGATG 1 cut(s) 10
BtsI GCAGTG 1 cut(s) 210
BtsIMutI CAGTG 1 cut(s) 210
Cac8I GCNNGC 1 cut(s) 39
CciI TCATGA 1 cut(s) 27
CseI GACGC 1 cut(s) 252
CviAII CATG 1 cut(s) 28
CviJI RGCY 5 cut(s) 15, 66, 77, 249, 256
CviKI_1 RGCY 5 cut(s) 15, 66, 77, 249, 256
DdeI CTNAG 1 cut(s) 186
Eco105I TACGTA 1 cut(s) 277
Eco81I CCTNAGG 1 cut(s) 186
FaeI CATG 1 cut(s) 31
FaiI YATR 2 cut(s) 29, 280
FaqI GGGAC 1 cut(s) 251
FatI CATG 1 cut(s) 27
FauI CCCGC 1 cut(s) 109
FokI GGATG 1 cut(s) 17
HgaI GACGC 1 cut(s) 252
Hin1II CATG 1 cut(s) 31
HindIII AAGCTT 1 cut(s) 13
HinfI GANTC 2 cut(s) 119, 173
HphI GGTGA 1 cut(s) 202
Hpy188I TCNGA 1 cut(s) 97
Hpy188III TCNNGA 1 cut(s) 28
HpyCH4III ACNGT 2 cut(s) 21, 154
HpyCH4IV ACGT 1 cut(s) 276
HpyCH4V TGCA 1 cut(s) 127
HpyF10VI GCNNNNNNNGC 1 cut(s) 221
HpyF3I CTNAG 1 cut(s) 186
HpySE526I ACGT 1 cut(s) 276
Hsp92II CATG 1 cut(s) 31
LpnPI CCDG 2 cut(s) 45, 173
LweI GCATC 1 cut(s) 98
MaeII ACGT 1 cut(s) 276
MaeIII GTNAC 2 cut(s) 174, 217
MboII GAAGA 1 cut(s) 209
MluCI AATT 3 cut(s) 48, 107, 209
MlyI GAGTC 1 cut(s) 182
MnlI CCTC 2 cut(s) 195, 239
MspA1I CMGCKG 2 cut(s) 77, 224
MwoI GCNNNNNNNGC 1 cut(s) 221
NlaIII CATG 1 cut(s) 31
NmuCI GTSAC 1 cut(s) 174
PagI TCATGA 1 cut(s) 27
PfeI GAWTC 1 cut(s) 119
PleI GAGTC 1 cut(s) 181
PpsI GAGTC 1 cut(s) 181
Ppu21I YACGTR 1 cut(s) 277
PvuII CAGCTG 1 cut(s) 77
SchI GAGTC 1 cut(s) 182
SetI ASST 5 cut(s) 17, 64, 79, 192, 279
SfaNI GCATC 1 cut(s) 98
SnaBI TACGTA 1 cut(s) 277
Sse9I AATT 3 cut(s) 48, 107, 209
SsiI CCGC 3 cut(s) 41, 102, 222
TaaI ACNGT 2 cut(s) 21, 154
TaiI ACGT 1 cut(s) 279
TasI AATT 3 cut(s) 48, 107, 209
TfiI GAWTC 1 cut(s) 119
TscAI CASTG 1 cut(s) 210
TseFI GTSAC 1 cut(s) 174
Tsp45I GTSAC 1 cut(s) 174
TspDTI ATGAA 1 cut(s) 44
TspGWI ACGGA 1 cut(s) 129
TspRI CASTG 1 cut(s) 210
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.