Rorug04G0343600

Belongs to the Frigida family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0004540
Physical Location & Seq
Forward (+)
51594736 .. 51601554
6819 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0343600.1

Sequence Viewer

Length: 1557 bp
ATGACAATGGGAGGTGTTAAGTTGGAACTTCGTTGTCCCAAAAAAGTATACAGTGTTGCACTTGACCCTAACCCTGATTGGACCTTTGAGGATCTAGTTTCCGAGCTAAATGCCCTTGAAATCAAGATCAACAGCGGTTCTAAGGTTCCACTCCCATTTGCTAAAGATAAATCAAGGGATATATCCAATTGGAAGAGTAATGGGAGAAACTCTAGTAGCCCGTTTGTTATGCGTGTGTTTGAGGATGACATGGACAACATTGACGCCGAAGATGAGGAGGTTCATGATCAGAAGTCCATGGTTGCTAAACGGTTTAATTTTGATGAACTCTATCTCAGTGACAGTGATGATTCTGGTGACGAATCATCTTTTGGCGCCGAACCTTACCTAATGGAGAAGGTTGATCTAGTGGAAAGTGGTTTGCTCGAGCTATCCCGTGAACATCAGTTCAAAGTTAAGGAGGAAATTAGGAACCAAATATCAGCATTAGAGACAGAACTGAAGAGTGAAACTGACAAGTCTATTTCTGCACTTGTTCGAGTTGAGAAATATAGAAAAGAAAGATCTGAAATGGATAGAAAACTAGACACTCAATATCAACGCAAGATAGCGGAAGCACTTGATAATCACTTAACTGTTGTCCAGCGAGACCTTGAAGTCAGATCTCAAATAGAAGAAAGAAAAATAAGAATTGATGCAGCTTATGAAGATGCTAAACGAAAGGAAGCTGAAGAAAAGCTTCGACAAGAACGAGCTAAAGCGGAAGCTGAGGCAAAAAGAGTTGAGGAAGCAAAGAGAGCTGAGGAAGCAAAAAGAGCTGCTTTGGAAGCTCAGAGAAGAGCAGCTAATGAAGCTGCAGCAAAAAAAGCTTCTGAAGCCTCAAAGAGGCCTGATACTGATGCCAATTTGGGAACTTCTAATGCTCAATCCGGTGGACCTCAAGTAAATAAGCCAGCAGCAGGAGCTAACAAAATCAGGGCAGCTGAAAGTGCTTTAAATTTAGAGCAGAGGAGACTACAAAAGTTAAAACAGTTGGATGAAGAAGTCCAGGCACTAAGATCAAGTTCCAATGAGAATTTTGGGAAGTACGAGAGGCAAATTGCTAAGTTGATCCAACAAATTACAGGAACAACAGAAAATGTCAGACAAAAAGAATATGATCTACTCAAGATCTTTTGCGATGCACGTTGCCCACAATCTATCAAAACTGCAGCATTGGCAAAGAAGGTCGTCTCCAACTGTAAACGCCCGGGGAATCCTGCATTTGCACAAGCATTCGTCATTGTTCGCATTACTTCAAAGGTTCCACATGCAATGGACCTTATCCTTGCTGAGTTACACAAAGCTTGCATCTATACAGTTCCAAAGCACTACTCACGGGAGACACTGCTGCTAGCCTTCATCACATCAACATTGGCAACATGTCATTGCATATATAATGCTGCATACATGGTGCTGTGGTCGAGTCAGCATTTGGATCAAATGAGACCTATTATAAAGCTCTTGGATTCCAAGAAGATGACGAAGGAAAGATTGAGAGCGTTGACAGTTATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Frigida

Protein Analysis

518

Amino Acids

58.75

Weight (kDa)

8.25

Isoelectric Point (pI)

46.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GLE1 PF07817 342 - 459 5e-13 GLE1-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1496
AasI GACNNNNNNGTC 1 cut(s) 656
AccB1I GGYRCC 1 cut(s) 374
AccI GTMKAC 1 cut(s) 48
AciI CCGC 3 cut(s) 135, 611, 761
AclWI GGATC 3 cut(s) 99, 1105, 1485
AcsI RAATTY 2 cut(s) 997, 1075
AcuI CTGAAG 3 cut(s) 521, 750, 894
AcyI GRCGYC 2 cut(s) 264, 375
AfaI GTAC 1 cut(s) 1088
AfiI CCNNNNNNNGG 2 cut(s) 885, 959
AflIII ACRYGT 1 cut(s) 1421
AgsI TTSAA 4 cut(s) 119, 451, 656, 1299
AjnI CCWGG 1 cut(s) 1047
AjuI GAANNNNNNNTTGG 2 cut(s) 354, 386
Alw26I GTCTC 6 cut(s) 485, 642, 1006, 1237, 1376, 1480
AlwI GGATC 3 cut(s) 99, 1105, 1485
Ama87I CYCGRG 2 cut(s) 425, 1249
AoxI GGCC 1 cut(s) 887
ApoI RAATTY 2 cut(s) 997, 1075
Asp700I GAANNNNTTC 1 cut(s) 738
AspLEI GCGC 1 cut(s) 377
AspS9I GGNCC 3 cut(s) 81, 935, 1318
AsuC2I CCSGG 2 cut(s) 1250, 1251
AsuHPI GGTGA 1 cut(s) 368
AsuNHI GCTAGC 1 cut(s) 1393
AvaI CYCGRG 2 cut(s) 425, 1249
AvaII GGWCC 3 cut(s) 81, 935, 1318
BanI GGYRCC 1 cut(s) 374
BbvCI CCTCAGC 2 cut(s) 768, 801
BcgI CGANNNNNNTGC 2 cut(s) 92, 126
BciT130I CCWGG 1 cut(s) 1049
BclI TGATCA 1 cut(s) 286
BcnI CCSGG 2 cut(s) 1250, 1251
BcoDI GTCTC 6 cut(s) 485, 642, 1006, 1237, 1376, 1480
BfaI CTAG 5 cut(s) 95, 213, 407, 584, 1394
BfmI CTRYAG 2 cut(s) 855, 1209
BfoI RGCGCY 1 cut(s) 378
BglII AGATCT 3 cut(s) 563, 662, 1170
Bme1390I CCNGG 3 cut(s) 1049, 1250, 1251
Bme18I GGWCC 3 cut(s) 81, 935, 1318
BmeT110I CYCGRG 2 cut(s) 425, 1249
BmgT120I GGNCC 3 cut(s) 81, 935, 1318
BmiI GGNNCC 4 cut(s) 147, 376, 473, 1305
BmrFI CCNGG 3 cut(s) 1049, 1250, 1251
BmsI GCATC 5 cut(s) 685, 700, 889, 1171, 1359
BmtI GCTAGC 1 cut(s) 1397
Bpu10I CCTNAGC 2 cut(s) 768, 801
BpuEI CTTGAG 2 cut(s) 924, 1151
BpuMI CCSGG 2 cut(s) 1250, 1251
BsaHI GRCGYC 2 cut(s) 264, 375
BsaI GGTCTC 2 cut(s) 642, 1480
BsaJI CCNNGG 3 cut(s) 297, 1249, 1250
BsaWI WCCGGW 1 cut(s) 929
Bsc4I CCNNNNNNNGG 2 cut(s) 885, 959
Bse3DI GCAATG 2 cut(s) 1320, 1426
BseBI CCWGG 1 cut(s) 1049
BseDI CCNNGG 3 cut(s) 297, 1249, 1250
BseGI GGATG 2 cut(s) 250, 1042
BseLI CCNNNNNNNGG 2 cut(s) 885, 959
BseMI GCAATG 2 cut(s) 1320, 1426
BseMII CTCAG 5 cut(s) 349, 759, 792, 845, 1323
BseRI GAGGAG 2 cut(s) 290, 1024
BsgI GTGCAG 1 cut(s) 513
BshFI GGCC 1 cut(s) 889
BshNI GGYRCC 1 cut(s) 374
BsiHKCI CYCGRG 2 cut(s) 425, 1249
BsiSI CCGG 2 cut(s) 930, 1250
BslFI GGGAC 1 cut(s) 21
BslI CCNNNNNNNGG 2 cut(s) 885, 959
BsmAI GTCTC 6 cut(s) 485, 642, 1006, 1237, 1376, 1480
BsmBI CGTCTC 1 cut(s) 1237
BsmFI GGGAC 1 cut(s) 21
BsmI GAATGC 1 cut(s) 1274
BsnI GGCC 1 cut(s) 889
Bso31I GGTCTC 2 cut(s) 642, 1480
BsoBI CYCGRG 2 cut(s) 425, 1249
Bsp19I CCATGG 1 cut(s) 297
BspACI CCGC 3 cut(s) 135, 611, 761
BspANI GGCC 1 cut(s) 889
BspCNI CTCAG 5 cut(s) 348, 760, 793, 844, 1324
BspHI TCATGA 1 cut(s) 283
BspLI GGNNCC 4 cut(s) 147, 376, 473, 1305
BspMAI CTGCAG 2 cut(s) 859, 1213
BspOI GCTAGC 1 cut(s) 1397
BspPI GGATC 3 cut(s) 99, 1105, 1485
BspQI GCTCTTC 1 cut(s) 832
BspT107I GGYRCC 1 cut(s) 374
BspTNI GGTCTC 2 cut(s) 642, 1480
BsrDI GCAATG 2 cut(s) 1320, 1426
BssECI CCNNGG 3 cut(s) 297, 1249, 1250
BssNAI GTATAC 1 cut(s) 49
BssNI GRCGYC 2 cut(s) 264, 375
BssT1I CCWWGG 1 cut(s) 297
Bst1107I GTATAC 1 cut(s) 49
Bst2UI CCWGG 1 cut(s) 1049
Bst4CI ACNGT 8 cut(s) 53, 312, 344, 637, 1032, 1241, 1360, 1549
Bst6I CTCTTC 3 cut(s) 188, 497, 832
BstACI GRCGYC 2 cut(s) 264, 375
BstC8I GCNNGC 3 cut(s) 954, 1348, 1395
BstDEI CTNAG 8 cut(s) 141, 335, 768, 801, 831, 1055, 1104, 1332
BstDSI CCRYGG 1 cut(s) 297
BstENI CCTNNNNNAGG 1 cut(s) 883
BstF5I GGATG 2 cut(s) 250, 1042
BstH2I RGCGCY 1 cut(s) 378
BstHHI GCGC 1 cut(s) 377
BstMAI GTCTC 6 cut(s) 485, 642, 1006, 1237, 1376, 1480
BstNI CCWGG 1 cut(s) 1049
BstNSI RCATGY 2 cut(s) 1313, 1425
BstSCI CCNGG 3 cut(s) 1047, 1248, 1249
BstSFI CTRYAG 2 cut(s) 855, 1209
BstX2I RGATCY 4 cut(s) 91, 563, 662, 1170
BstYI RGATCY 4 cut(s) 91, 563, 662, 1170
BstZ17I GTATAC 1 cut(s) 49
BsuRI GGCC 1 cut(s) 889
BtgI CCRYGG 1 cut(s) 297
BtgZI GCGATG 1 cut(s) 1194
BtsCI GGATG 2 cut(s) 250, 1042
BtsI GCAGTG 1 cut(s) 1385
BtsIMutI CAGTG 4 cut(s) 58, 343, 349, 1385
Cac8I GCNNGC 3 cut(s) 954, 1348, 1395
CciI TCATGA 1 cut(s) 283
CfoI GCGC 1 cut(s) 377
Cfr13I GGNCC 3 cut(s) 81, 935, 1318
Cfr9I CCCGGG 1 cut(s) 1249
CseI GACGC 1 cut(s) 272
Csp6I GTAC 1 cut(s) 1087
CviAII CATG 6 cut(s) 250, 284, 298, 1310, 1422, 1450
CviQI GTAC 1 cut(s) 1087
DdeI CTNAG 8 cut(s) 141, 335, 768, 801, 831, 1055, 1104, 1332
DinI GGCGCC 1 cut(s) 376
DraI TTTAAA 1 cut(s) 996
DrdI GACNNNNNNGTC 1 cut(s) 656
DseDI GACNNNNNNGTC 1 cut(s) 656
Eam1104I CTCTTC 3 cut(s) 188, 497, 832
EarI CTCTTC 3 cut(s) 188, 497, 832
Eco130I CCWWGG 1 cut(s) 297
Eco147I AGGCCT 1 cut(s) 889
Eco31I GGTCTC 2 cut(s) 642, 1480
Eco47I GGWCC 3 cut(s) 81, 935, 1318
Eco57I CTGAAG 3 cut(s) 521, 750, 894
Eco88I CYCGRG 2 cut(s) 425, 1249
EcoNI CCTNNNNNAGG 1 cut(s) 883
EcoRII CCWGG 1 cut(s) 1047
EcoT14I CCWWGG 1 cut(s) 297
EgeI GGCGCC 1 cut(s) 376
EheI GGCGCC 1 cut(s) 376
ErhI CCWWGG 1 cut(s) 297
Esp3I CGTCTC 1 cut(s) 1237
FaeI CATG 6 cut(s) 253, 287, 301, 1313, 1425, 1453
FalI AAGNNNNNCTT 4 cut(s) 723, 755, 805, 837
FaqI GGGAC 1 cut(s) 21
FatI CATG 6 cut(s) 249, 283, 297, 1309, 1421, 1449
FbaI TGATCA 1 cut(s) 286
FblI GTMKAC 1 cut(s) 48
FokI GGATG 2 cut(s) 257, 1049
FspBI CTAG 5 cut(s) 95, 213, 407, 584, 1394
GlaI GCGC 1 cut(s) 376
HaeII RGCGCY 1 cut(s) 378
HaeIII GGCC 1 cut(s) 889
HapII CCGG 2 cut(s) 930, 1250
HgaI GACGC 1 cut(s) 272
HhaI GCGC 1 cut(s) 377
Hin1I GRCGYC 2 cut(s) 264, 375
Hin1II CATG 6 cut(s) 253, 287, 301, 1313, 1425, 1453
Hin6I GCGC 1 cut(s) 375
HinP1I GCGC 1 cut(s) 375
HincII GTYRAC 1 cut(s) 1545
HindII GTYRAC 1 cut(s) 1545
HindIII AAGCTT 3 cut(s) 737, 867, 1344
HinfI GANTC 5 cut(s) 350, 362, 1255, 1465, 1508
HpaII CCGG 2 cut(s) 930, 1250
HphI GGTGA 1 cut(s) 368
Hpy166II GTNNAC 5 cut(s) 49, 440, 935, 1244, 1545
Hpy188I TCNGA 7 cut(s) 103, 291, 568, 662, 834, 874, 1145
Hpy188III TCNNGA 3 cut(s) 124, 284, 1168
Hpy8I GTNNAC 5 cut(s) 49, 440, 935, 1244, 1545
HpyAV CCTTC 4 cut(s) 391, 1219, 1408, 1519
HpyCH4III ACNGT 8 cut(s) 53, 312, 344, 637, 1032, 1241, 1360, 1549
HpyCH4IV ACGT 1 cut(s) 1186
HpyF3I CTNAG 8 cut(s) 141, 335, 768, 801, 831, 1055, 1104, 1332
HpySE526I ACGT 1 cut(s) 1186
Hsp92I GRCGYC 2 cut(s) 264, 375
Hsp92II CATG 6 cut(s) 253, 287, 301, 1313, 1425, 1453
HspAI GCGC 1 cut(s) 375
KasI GGCGCC 1 cut(s) 374
Ksp22I TGATCA 1 cut(s) 286
LguI GCTCTTC 1 cut(s) 832
LmnI GCTCC 1 cut(s) 962
LweI GCATC 5 cut(s) 685, 700, 889, 1171, 1359
MaeI CTAG 5 cut(s) 95, 213, 407, 584, 1394
MaeII ACGT 1 cut(s) 1186
MaeIII GTNAC 3 cut(s) 338, 356, 1335
MboII GAAGA 9 cut(s) 205, 281, 514, 686, 719, 743, 849, 1052, 1528
MfeI CAATTG 1 cut(s) 187
MflI RGATCY 4 cut(s) 91, 563, 662, 1170
MluCI AATT 9 cut(s) 187, 316, 465, 690, 904, 997, 1075, 1098, 1119
Mly113I GGCGCC 1 cut(s) 375
MlyI GAGTC 1 cut(s) 1474
MmeI TCCRAC 3 cut(s) 1014, 1138, 1260
MroXI GAANNNNTTC 1 cut(s) 738
MseI TTAA 6 cut(s) 18, 315, 456, 632, 995, 1025
MspA1I CMGCKG 2 cut(s) 135, 983
MspI CCGG 2 cut(s) 930, 1250
MspR9I CCNGG 3 cut(s) 1049, 1250, 1251
MunI CAATTG 1 cut(s) 187
Mva1269I GAATGC 1 cut(s) 1274
MvaI CCWGG 1 cut(s) 1049
NarI GGCGCC 1 cut(s) 375
NciI CCSGG 2 cut(s) 1250, 1251
NcoI CCATGG 1 cut(s) 297
NheI GCTAGC 1 cut(s) 1393
NlaIII CATG 6 cut(s) 253, 287, 301, 1313, 1425, 1453
NlaIV GGNNCC 4 cut(s) 147, 376, 473, 1305
NmuCI GTSAC 2 cut(s) 338, 356
NspI RCATGY 2 cut(s) 1313, 1425
PaeR7I CTCGAG 1 cut(s) 425
PagI TCATGA 1 cut(s) 283
PceI AGGCCT 1 cut(s) 889
PciI ACATGT 1 cut(s) 1421
PciSI GCTCTTC 1 cut(s) 832
PcsI WCGNNNNNNNCGW 1 cut(s) 748
PctI GAATGC 1 cut(s) 1274
PdmI GAANNNNTTC 1 cut(s) 738
PfeI GAWTC 4 cut(s) 350, 362, 1255, 1508
PleI GAGTC 1 cut(s) 1473
PluTI GGCGCC 1 cut(s) 378
PpsI GAGTC 1 cut(s) 1473
PscI ACATGT 1 cut(s) 1421
PsiI TTATAA 1 cut(s) 1496
Psp6I CCWGG 1 cut(s) 1047
PspGI CCWGG 1 cut(s) 1047
PspN4I GGNNCC 4 cut(s) 147, 376, 473, 1305
PspPI GGNCC 3 cut(s) 81, 935, 1318
PspXI VCTCGAGB 1 cut(s) 425
PstI CTGCAG 2 cut(s) 859, 1213
PsuI RGATCY 4 cut(s) 91, 563, 662, 1170
PvuII CAGCTG 1 cut(s) 983
RsaI GTAC 1 cut(s) 1088
RsaNI GTAC 1 cut(s) 1087
SapI GCTCTTC 1 cut(s) 832
SaqAI TTAA 6 cut(s) 18, 315, 456, 632, 995, 1025
Sau96I GGNCC 3 cut(s) 81, 935, 1318
SchI GAGTC 1 cut(s) 1474
ScrFI CCNGG 3 cut(s) 1049, 1250, 1251
SfaNI GCATC 5 cut(s) 685, 700, 889, 1171, 1359
SfcI CTRYAG 2 cut(s) 855, 1209
SfoI GGCGCC 1 cut(s) 376
Sfr274I CTCGAG 1 cut(s) 425
SinI GGWCC 3 cut(s) 81, 935, 1318
SlaI CTCGAG 1 cut(s) 425
SmaI CCCGGG 1 cut(s) 1251
SmlI CTYRAG 3 cut(s) 425, 939, 1166
SmoI CTYRAG 3 cut(s) 425, 939, 1166
Sse9I AATT 9 cut(s) 187, 316, 465, 690, 904, 997, 1075, 1098, 1119
SseBI AGGCCT 1 cut(s) 889
SsiI CCGC 3 cut(s) 135, 611, 761
SspDI GGCGCC 1 cut(s) 374
SspMI CTAG 5 cut(s) 95, 213, 407, 584, 1394
StuI AGGCCT 1 cut(s) 889
StyD4I CCNGG 3 cut(s) 1047, 1248, 1249
StyI CCWWGG 1 cut(s) 297
TaaI ACNGT 8 cut(s) 53, 312, 344, 637, 1032, 1241, 1360, 1549
TaiI ACGT 1 cut(s) 1189
TaqI TCGA 4 cut(s) 426, 538, 742, 1463
TasI AATT 9 cut(s) 187, 316, 465, 690, 904, 997, 1075, 1098, 1119
TfiI GAWTC 4 cut(s) 350, 362, 1255, 1508
Tru1I TTAA 6 cut(s) 18, 315, 456, 632, 995, 1025
Tru9I TTAA 6 cut(s) 18, 315, 456, 632, 995, 1025
TscAI CASTG 4 cut(s) 58, 343, 349, 1392
TseFI GTSAC 2 cut(s) 338, 356
Tsp45I GTSAC 2 cut(s) 338, 356
TspDTI ATGAA 6 cut(s) 272, 339, 720, 864, 1053, 1390
TspMI CCCGGG 1 cut(s) 1249
TspRI CASTG 4 cut(s) 58, 343, 349, 1392
VpaK11BI GGWCC 3 cut(s) 81, 935, 1318
XagI CCTNNNNNAGG 1 cut(s) 883
XapI RAATTY 2 cut(s) 997, 1075
XceI RCATGY 2 cut(s) 1313, 1425
XhoI CTCGAG 1 cut(s) 425
XmaI CCCGGG 1 cut(s) 1249
XmiI GTMKAC 1 cut(s) 48
XmnI GAANNNNTTC 1 cut(s) 738
XspI CTAG 5 cut(s) 95, 213, 407, 584, 1394
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.