Rmu_ssc0000204.1_g000050

F-box FBD LRR-repeat protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000204.1
Physical Location & Seq
Forward (+)
234067 .. 235443
1377 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000204.1_g000050.1.cds

Sequence Viewer

Length: 1377 bp
atgtctgacattcccgatcttgttattgacaaaatccttggactcattcctactaaagctgcgttccaggtgagctttctttgcaagcaacggcaagatgtagtctcctcattccctgtactcaatttcaacgaggatgatgattttgaccgccacaaccttaatcgcgatcgttaccgtcactacaaacatcaacacaaaaggttcatcaatttcttgaagggctatttagattatcgtaaaaagaaggaccagaaagagctcctgaataaattaagtcttcacatgaggatgttttcgcgtcgagattcatctaccataaccgagtggttgaaatatgcatgtgagagaggcctcaaagagttggatatcagtcctaaaatgagtgttgacccaacgagttggattgtcagtgagcgcccgccggaaagtctctacctcttctacatcttgccttggttggcgattgctagtgcaaaatcatctttaactagtctaaagttggagtgtgtgagagttccgcatctgctgcatgtaagagttccgcacgcttatgagcgactttttccatccttgaaaactctgtccttcaaaacttcacgggttgttgatctcgattctcttctatttgagtgcccgtccatggagtacctgtcattaactcaatgttcgattggaaactccgagttttatgttcaatgctcaagtcttaagtccttggaaattaagtattgccgtcttcatgttattcgagttgatcaagccttcaatcttgaatcttttacatttctctcaccgccgacatattcaagatgtgaaaagatgatcttgaagaatgccttcaacttgaaacatatcaacatttgtgttgattacctccgggaattttctttattgggaagccatcgtgcactagaggccacaattgaccgatatgtccatttgttcgagttctttgatggttatttgaatgccaacgtttctgttaaagcctatgaggccacaattttagttggggaacttttggaccaagaatggttctcgtcatattcgacacattttccgaagctgatgacctttcttagaaaatttagatgctgctcgaaaataaacctctacgttcaggctctcatcattccaaagaattatagaaagatgacctccgttccaccattgccggaaactttcactttgcaggcatggatgtcgaatccaccactagtgggaagtaaagtctatttggaaatggaggactccttgcaatggatggcaccactggcacagatattgatcatgccggtggacgttgaagaagatagaaagaaagtatacgagcgagctagtcctgtaggacatggacgaatgagaatggtatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

458

Amino Acids

53.62

Weight (kDa)

8.92

Isoelectric Point (pI)

44.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Style Settings
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 935
AccB1I GGYRCC 1 cut(s) 1270
AccI GTMKAC 1 cut(s) 1329
AccII CGCG 2 cut(s) 168, 301
AciI CCGC 5 cut(s) 151, 422, 521, 545, 797
AclI AACGTT 1 cut(s) 978
AcsI RAATTY 2 cut(s) 884, 1088
AfaI GTAC 2 cut(s) 120, 650
AfiI CCNNNNNNNGG 3 cut(s) 643, 1223, 1263
AflII CTTAAG 1 cut(s) 710
AhlI ACTAGT 2 cut(s) 491, 1219
AjnI CCWGG 1 cut(s) 66
AluBI AGCT 5 cut(s) 59, 75, 262, 1069, 1340
AluI AGCT 5 cut(s) 59, 75, 262, 1069, 1340
Alw21I GWGCWC 2 cut(s) 264, 913
Alw26I GTCTC 2 cut(s) 109, 437
Alw44I GTGCAC 1 cut(s) 909
AoxI GGCC 3 cut(s) 352, 918, 999
ApaLI GTGCAC 1 cut(s) 909
ApeKI GCWGC 3 cut(s) 59, 529, 1098
ApoI RAATTY 2 cut(s) 884, 1088
Asp700I GAANNNNTTC 1 cut(s) 839
AspLEI GCGC 1 cut(s) 420
AspS9I GGNCC 2 cut(s) 250, 1027
AsuC2I CCSGG 1 cut(s) 881
AsuHPI GGTGA 2 cut(s) 82, 786
AvaII GGWCC 2 cut(s) 250, 1027
BaeGI GKGCMC 2 cut(s) 638, 913
BanI GGYRCC 1 cut(s) 1270
BanII GRGCYC 1 cut(s) 264
BbsI GAAGAC 2 cut(s) 272, 731
Bbv12I GWGCWC 2 cut(s) 264, 913
BbvI GCAGC 3 cut(s) 46, 516, 1085
BccI CCATC 4 cut(s) 577, 912, 953, 1261
BceAI ACGGC 2 cut(s) 107, 720
BcgI CGANNNNNNTGC 2 cut(s) 1188, 1222
BciT130I CCWGG 1 cut(s) 68
BclI TGATCA 2 cut(s) 757, 1290
BcnI CCSGG 1 cut(s) 881
BcoDI GTCTC 2 cut(s) 109, 437
BcuI ACTAGT 2 cut(s) 491, 1219
BfaI CTAG 5 cut(s) 471, 492, 914, 1220, 1341
BfmI CTRYAG 1 cut(s) 1347
BfoI RGCGCY 1 cut(s) 421
BfrI CTTAAG 1 cut(s) 710
BglI GCCNNNNNGGC 1 cut(s) 998
BisI GCNGC 3 cut(s) 60, 530, 1099
BlsI GCNGC 3 cut(s) 61, 531, 1100
Bme1390I CCNGG 2 cut(s) 68, 881
Bme18I GGWCC 2 cut(s) 250, 1027
BmgT120I GGNCC 2 cut(s) 250, 1027
BmiI GGNNCC 1 cut(s) 1272
BmrFI CCNGG 2 cut(s) 68, 881
BmsI GCATC 2 cut(s) 532, 1085
BpiI GAAGAC 2 cut(s) 272, 731
BpuEI CTTGAG 1 cut(s) 688
BpuMI CCSGG 1 cut(s) 881
BsaBI GATNNNNATC 1 cut(s) 1289
BsaJI CCNNGG 4 cut(s) 37, 455, 642, 717
BsaXI ACNNNNNCTCC 2 cut(s) 638, 668
Bsc4I CCNNNNNNNGG 3 cut(s) 643, 1223, 1263
Bse118I RCCGGY 1 cut(s) 1297
Bse1I ACTGG 1 cut(s) 1281
Bse3DI GCAATG 2 cut(s) 1172, 1268
Bse8I GATNNNNATC 1 cut(s) 1289
BseBI CCWGG 1 cut(s) 68
BseDI CCNNGG 4 cut(s) 37, 455, 642, 717
BseGI GGATG 5 cut(s) 142, 297, 569, 1209, 1272
BseJI GATNNNNATC 1 cut(s) 1289
BseLI CCNNNNNNNGG 3 cut(s) 643, 1223, 1263
BseMI GCAATG 2 cut(s) 1172, 1268
BseNI ACTGG 1 cut(s) 1281
BseRI GAGGAG 1 cut(s) 97
BseSI GKGCMC 2 cut(s) 638, 913
BseXI GCAGC 3 cut(s) 46, 516, 1085
Bsh1236I CGCG 2 cut(s) 168, 301
Bsh1285I CGRYCG 1 cut(s) 172
BshFI GGCC 3 cut(s) 354, 920, 1001
BshNI GGYRCC 1 cut(s) 1270
BsiEI CGRYCG 1 cut(s) 172
BsiHKAI GWGCWC 2 cut(s) 264, 913
BsiSI CCGG 4 cut(s) 425, 880, 1178, 1298
BslI CCNNNNNNNGG 3 cut(s) 643, 1223, 1263
BsmAI GTCTC 2 cut(s) 109, 437
BsmI GAATGC 2 cut(s) 841, 976
BsnI GGCC 3 cut(s) 354, 920, 1001
Bsp1286I GDGCHC 3 cut(s) 264, 638, 913
Bsp143I GATC 6 cut(s) 16, 169, 610, 757, 825, 1290
Bsp19I CCATGG 1 cut(s) 642
Bsp68I TCGCGA 1 cut(s) 168
BspACI CCGC 5 cut(s) 151, 422, 521, 545, 797
BspANI GGCC 3 cut(s) 354, 920, 1001
BspFNI CGCG 2 cut(s) 168, 301
BspLI GGNNCC 1 cut(s) 1272
BspT107I GGYRCC 1 cut(s) 1270
BspTI CTTAAG 1 cut(s) 710
BsrDI GCAATG 2 cut(s) 1172, 1268
BsrFI RCCGGY 1 cut(s) 1297
BsrI ACTGG 1 cut(s) 1281
BssAI RCCGGY 1 cut(s) 1297
BssECI CCNNGG 4 cut(s) 37, 455, 642, 717
BssMI GATC 6 cut(s) 16, 169, 610, 757, 825, 1290
BssNAI GTATAC 1 cut(s) 1330
BssT1I CCWWGG 4 cut(s) 37, 455, 642, 717
Bst1107I GTATAC 1 cut(s) 1330
Bst2UI CCWGG 1 cut(s) 68
Bst4CI ACNGT 1 cut(s) 179
Bst6I CTCTTC 2 cut(s) 446, 627
BstAFI CTTAAG 1 cut(s) 710
BstAPI GCANNNNNTGC 1 cut(s) 529
BstC8I GCNNGC 5 cut(s) 86, 422, 549, 1197, 1338
BstDEI CTNAG 1 cut(s) 1082
BstDSI CCRYGG 1 cut(s) 642
BstF5I GGATG 5 cut(s) 142, 297, 569, 1209, 1272
BstFNI CGCG 2 cut(s) 168, 301
BstH2I RGCGCY 1 cut(s) 421
BstHHI GCGC 1 cut(s) 420
BstKTI GATC 6 cut(s) 19, 172, 613, 760, 828, 1293
BstMAI GTCTC 2 cut(s) 109, 437
BstMBI GATC 6 cut(s) 16, 169, 610, 757, 825, 1290
BstMCI CGRYCG 1 cut(s) 172
BstMWI GCNNNNNNNGC 5 cut(s) 81, 529, 917, 998, 1277
BstNI CCWGG 1 cut(s) 68
BstNSI RCATGY 2 cut(s) 345, 536
BstSCI CCNGG 2 cut(s) 66, 879
BstSFI CTRYAG 1 cut(s) 1347
BstSLI GKGCMC 2 cut(s) 638, 913
BstUI CGCG 2 cut(s) 168, 301
BstV1I GCAGC 3 cut(s) 46, 516, 1085
BstV2I GAAGAC 2 cut(s) 272, 731
BstXI CCANNNNNNTGG 1 cut(s) 402
BstZ17I GTATAC 1 cut(s) 1330
BsuRI GGCC 3 cut(s) 354, 920, 1001
BtgI CCRYGG 1 cut(s) 642
BtsCI GGATG 5 cut(s) 142, 297, 569, 1209, 1272
BtsIMutI CAGTG 2 cut(s) 418, 1274
BtuMI TCGCGA 1 cut(s) 168
Cac8I GCNNGC 5 cut(s) 86, 422, 549, 1197, 1338
CfoI GCGC 1 cut(s) 420
Cfr10I RCCGGY 1 cut(s) 1297
Cfr13I GGNCC 2 cut(s) 250, 1027
CseI GACGC 1 cut(s) 290
Csp6I GTAC 2 cut(s) 119, 649
CviAII CATG 8 cut(s) 286, 342, 533, 643, 743, 1200, 1294, 1355
CviQI GTAC 2 cut(s) 119, 649
DdeI CTNAG 1 cut(s) 1082
DpnI GATC 6 cut(s) 18, 171, 612, 759, 827, 1292
DpnII GATC 6 cut(s) 16, 169, 610, 757, 825, 1290
DrdI GACNNNNNNGTC 1 cut(s) 935
DseDI GACNNNNNNGTC 1 cut(s) 935
Eam1104I CTCTTC 2 cut(s) 446, 627
EarI CTCTTC 2 cut(s) 446, 627
Ecl136II GAGCTC 1 cut(s) 262
Eco130I CCWWGG 4 cut(s) 37, 455, 642, 717
Eco147I AGGCCT 1 cut(s) 354
Eco24I GRGCYC 1 cut(s) 264
Eco32I GATATC 1 cut(s) 370
Eco47I GGWCC 2 cut(s) 250, 1027
Eco53kI GAGCTC 1 cut(s) 262
EcoICRI GAGCTC 1 cut(s) 262
EcoRII CCWGG 1 cut(s) 66
EcoRV GATATC 1 cut(s) 370
EcoT14I CCWWGG 4 cut(s) 37, 455, 642, 717
EcoT22I ATGCAT 1 cut(s) 343
EcoT38I GRGCYC 1 cut(s) 264
ErhI CCWWGG 4 cut(s) 37, 455, 642, 717
FaeI CATG 8 cut(s) 289, 345, 536, 646, 746, 1203, 1297, 1358
FalI AAGNNNNNCTT 4 cut(s) 812, 844, 824, 856
FatI CATG 8 cut(s) 285, 341, 532, 642, 742, 1199, 1293, 1354
FauI CCCGC 1 cut(s) 429
FbaI TGATCA 2 cut(s) 757, 1290
FblI GTMKAC 1 cut(s) 1329
Fnu4HI GCNGC 3 cut(s) 60, 530, 1099
FokI GGATG 5 cut(s) 149, 304, 556, 1216, 1279
FriOI GRGCYC 1 cut(s) 264
Fsp4HI GCNGC 3 cut(s) 60, 530, 1099
FspBI CTAG 5 cut(s) 471, 492, 914, 1220, 1341
GlaI GCGC 1 cut(s) 419
GluI GCNGC 3 cut(s) 60, 530, 1099
HaeII RGCGCY 1 cut(s) 421
HaeIII GGCC 3 cut(s) 354, 920, 1001
HapII CCGG 4 cut(s) 425, 880, 1178, 1298
HgaI GACGC 1 cut(s) 290
HhaI GCGC 1 cut(s) 420
Hin1II CATG 8 cut(s) 289, 345, 536, 646, 746, 1203, 1297, 1358
Hin6I GCGC 1 cut(s) 418
HinP1I GCGC 1 cut(s) 418
HincII GTYRAC 1 cut(s) 391
HindII GTYRAC 1 cut(s) 391
HinfI GANTC 6 cut(s) 42, 308, 617, 776, 1210, 1253
HpaII CCGG 4 cut(s) 425, 880, 1178, 1298
HphI GGTGA 2 cut(s) 82, 786
Hpy166II GTNNAC 4 cut(s) 391, 911, 1303, 1330
Hpy188I TCNGA 3 cut(s) 7, 685, 1065
Hpy188III TCNNGA 9 cut(s) 14, 167, 217, 265, 305, 614, 773, 810, 829
Hpy8I GTNNAC 4 cut(s) 391, 911, 1303, 1330
Hpy99I CGWCG 1 cut(s) 306
HpyAV CCTTC 5 cut(s) 214, 241, 598, 775, 850
HpyCH4III ACNGT 1 cut(s) 179
HpyCH4IV ACGT 3 cut(s) 978, 1119, 1305
HpyCH4V TGCA 7 cut(s) 84, 341, 476, 532, 911, 1195, 1261
HpyF10VI GCNNNNNNNGC 5 cut(s) 81, 529, 917, 998, 1277
HpyF3I CTNAG 1 cut(s) 1082
HpySE526I ACGT 3 cut(s) 978, 1119, 1305
Hsp92II CATG 8 cut(s) 289, 345, 536, 646, 746, 1203, 1297, 1358
HspAI GCGC 1 cut(s) 418
Ksp22I TGATCA 2 cut(s) 757, 1290
Kzo9I GATC 6 cut(s) 16, 169, 610, 757, 825, 1290
LmnI GCTCC 1 cut(s) 267
Lsp1109I GCAGC 3 cut(s) 46, 516, 1085
LweI GCATC 2 cut(s) 532, 1085
MaeI CTAG 5 cut(s) 471, 492, 914, 1220, 1341
MaeII ACGT 3 cut(s) 978, 1119, 1305
MaeIII GTNAC 2 cut(s) 173, 179
MalI GATC 6 cut(s) 18, 171, 612, 759, 827, 1292
MboI GATC 6 cut(s) 16, 169, 610, 757, 825, 1290
MboII GAAGA 7 cut(s) 272, 433, 614, 731, 844, 1322, 1325
MfeI CAATTG 1 cut(s) 924
MhlI GDGCHC 3 cut(s) 264, 638, 913
MluCI AATT 9 cut(s) 124, 211, 272, 723, 884, 924, 1005, 1088, 1144
MlyI GAGTC 2 cut(s) 36, 1247
MmeI TCCRAC 3 cut(s) 345, 383, 483
Mph1103I ATGCAT 1 cut(s) 343
MroXI GAANNNNTTC 1 cut(s) 839
MseI TTAA 7 cut(s) 162, 275, 488, 659, 711, 726, 987
MslI CAYNNNNRTG 3 cut(s) 290, 552, 1298
MspCI CTTAAG 1 cut(s) 710
MspI CCGG 4 cut(s) 425, 880, 1178, 1298
MspR9I CCNGG 2 cut(s) 68, 881
MunI CAATTG 1 cut(s) 924
Mva1269I GAATGC 2 cut(s) 841, 976
MvaI CCWGG 1 cut(s) 68
MvnI CGCG 2 cut(s) 168, 301
MwoI GCNNNNNNNGC 5 cut(s) 81, 529, 917, 998, 1277
NciI CCSGG 1 cut(s) 881
NcoI CCATGG 1 cut(s) 642
NdeII GATC 6 cut(s) 16, 169, 610, 757, 825, 1290
NlaIII CATG 8 cut(s) 289, 345, 536, 646, 746, 1203, 1297, 1358
NlaIV GGNNCC 1 cut(s) 1272
NmuCI GTSAC 1 cut(s) 179
NruI TCGCGA 1 cut(s) 168
NsiI ATGCAT 1 cut(s) 343
NspI RCATGY 2 cut(s) 345, 536
PceI AGGCCT 1 cut(s) 354
PcsI WCGNNNNNNNCGW 1 cut(s) 1049
PctI GAATGC 2 cut(s) 841, 976
PdmI GAANNNNTTC 1 cut(s) 839
PfeI GAWTC 4 cut(s) 308, 617, 776, 1210
PfoI TCCNGGA 1 cut(s) 879
PkrI GCNGC 3 cut(s) 61, 531, 1100
Ple19I CGATCG 1 cut(s) 172
PleI GAGTC 2 cut(s) 36, 1247
PpsI GAGTC 2 cut(s) 36, 1247
Psp124BI GAGCTC 1 cut(s) 264
Psp1406I AACGTT 1 cut(s) 978
Psp6I CCWGG 1 cut(s) 66
PspGI CCWGG 1 cut(s) 66
PspN4I GGNNCC 1 cut(s) 1272
PspPI GGNCC 2 cut(s) 250, 1027
PvuI CGATCG 1 cut(s) 172
RruI TCGCGA 1 cut(s) 168
RsaI GTAC 2 cut(s) 120, 650
RsaNI GTAC 2 cut(s) 119, 649
RseI CAYNNNNRTG 3 cut(s) 290, 552, 1298
SacI GAGCTC 1 cut(s) 264
SaqAI TTAA 7 cut(s) 162, 275, 488, 659, 711, 726, 987
SatI GCNGC 3 cut(s) 60, 530, 1099
Sau3AI GATC 6 cut(s) 16, 169, 610, 757, 825, 1290
Sau96I GGNCC 2 cut(s) 250, 1027
SchI GAGTC 2 cut(s) 36, 1247
ScrFI CCNGG 2 cut(s) 68, 881
SduI GDGCHC 3 cut(s) 264, 638, 913
SfaNI GCATC 2 cut(s) 532, 1085
SfcI CTRYAG 1 cut(s) 1347
SinI GGWCC 2 cut(s) 250, 1027
SmiMI CAYNNNNRTG 3 cut(s) 290, 552, 1298
SmlI CTYRAG 2 cut(s) 703, 710
SmoI CTYRAG 2 cut(s) 703, 710
SpeI ACTAGT 2 cut(s) 491, 1219
Sse9I AATT 9 cut(s) 124, 211, 272, 723, 884, 924, 1005, 1088, 1144
SseBI AGGCCT 1 cut(s) 354
SsiI CCGC 5 cut(s) 151, 422, 521, 545, 797
SspMI CTAG 5 cut(s) 471, 492, 914, 1220, 1341
SstI GAGCTC 1 cut(s) 264
StuI AGGCCT 1 cut(s) 354
StyD4I CCNGG 2 cut(s) 66, 879
StyI CCWWGG 4 cut(s) 37, 455, 642, 717
TaaI ACNGT 1 cut(s) 179
TaiI ACGT 3 cut(s) 981, 1122, 1308
TaqI TCGA 8 cut(s) 304, 615, 671, 751, 948, 1052, 1103, 1208
TaqII GACCGA 1 cut(s) 945
TasI AATT 9 cut(s) 124, 211, 272, 723, 884, 924, 1005, 1088, 1144
TatI WGTACW 1 cut(s) 118
TfiI GAWTC 4 cut(s) 308, 617, 776, 1210
Tru1I TTAA 7 cut(s) 162, 275, 488, 659, 711, 726, 987
Tru9I TTAA 7 cut(s) 162, 275, 488, 659, 711, 726, 987
TscAI CASTG 2 cut(s) 418, 1281
TseFI GTSAC 1 cut(s) 179
TseI GCWGC 3 cut(s) 59, 529, 1098
Tsp45I GTSAC 1 cut(s) 179
TspDTI ATGAA 3 cut(s) 196, 300, 731
TspGWI ACGGA 1 cut(s) 1153
TspRI CASTG 2 cut(s) 418, 1281
Vha464I CTTAAG 1 cut(s) 710
VneI GTGCAC 1 cut(s) 909
VpaK11BI GGWCC 2 cut(s) 250, 1027
XapI RAATTY 2 cut(s) 884, 1088
XceI RCATGY 2 cut(s) 345, 536
XmiI GTMKAC 1 cut(s) 1329
XmnI GAANNNNTTC 1 cut(s) 839
XspI CTAG 5 cut(s) 471, 492, 914, 1220, 1341
Zsp2I ATGCAT 1 cut(s) 343
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.