Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0004540

Physical Location & Seq

Genomic Coordinates Forward (+)

70127374 .. 70128448

Gene Structure 1075 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG396000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

ATGGTGGTGAAAGCTGAAAATATATATCGCTTACCTTGGGTATCCTTTGCTAATAATGCACAGTCTCTTACTAGTCTAAATCTGGAGTATGTTAGTATAGCGGACATTCAAAGTGCAAAACTTAAAAGGGATGAAAAGTACCTTCTTCCCTCCTTAAAAACCATGTCCTTCGAATGTGTGTGGTTTGATGACAAAGCTCTCTTCTCCTTACTATTGGAGTGCCCTTCCATCAAGTATTTGTCACTGATTGAATGCCGCTTTGGAGACTTCACGTGTCGTGTTTCAAGTTCAACTCTCAAGTCCTTGCAAGTTAAGTATTGCAAGCGGCTACAATTTGTTCAAGTTGATGATGAAGCTAAGAACCTTGAATCTTTTACATTTGTTTCTCCGCTACCACCAAATTCAAAATGTGAAAAGGTGATCTTGAATAATACCTTCAACTTGAAAAATATCACCATTTGTGTTGATGACCTATGGGAATTTTCTTTGAACGGATATCATCGTACACTAAAAGCCACACTCGATGTCCAAAATCTCCATCTTTTCGATTTTCTTGGGAGTTTAAAGGATGAATTTTCTATTATAAGATGTCAGTGGGTCAAGATTGCAGTTCGAGAACTCTGGTTCAAAAATTGGTTCGTGCATTACTCTTCACATTTTCCTACATTGATTGGTTGTCTCAAAGAATTTGGGTGCTGCAATAAAGTATCCCTCTATAATCAAGATCTGAAGGCTCTCATCATTCCTAATCATTTTAGGAAGGAATTCTCTTCACCATTGCCTAAAATTTGCATTCTAGAGGTAAGGATGCCAAATCCACCAAAAGAAGTGAGTAGAGATTATTTCGACTTGATGGTCTCCTTGCATTGGATTGCACCTTCCGCACAAGTGAAAATCTGCAAAAGTGAAACGCACCGTTTTGATGCATTGTCAGAAGAATTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box

Protein Analysis

314

Amino Acids

36.53

Weight (kDa)

8.15

Isoelectric Point (pI)

40.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_At1g61320_AtMIF1	PF23622	7 - 157	2e-07	At1g61320/AtMIF1, LRR domain
LRR_At5g56370	PF24758	19 - 142	5.4e-10	FBD-associated F-box protein At5g56370, LRR repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004540)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g33180 FvH4_4g33210 FvH4_4g33310 FvH4_4g33501
rosa_chinensis	RchiOBHm_Chr4g0442321 RchiOBHm_Chr4g0442821 RchiOBHm_Chr4g0442851 RchiOBHm_Chr4g0442941
rosa_multiflora	Rmu_co8426117.1_g000001 Rmu_sc0000124.1_g000038 Rmu_sc0000124.1_g000050 Rmu_sc0000124.1_g000054 Rmu_sc0007295.1_g000003 Rmu_sc0041664.1_g000001 Rmu_ssc0000204.1_g000015 Rmu_ssc0000204.1_g000016 Rmu_ssc0000204.1_g000050 Rmu_ssc0000204.1_g000053 Rmu_ssc0000204.1_g000057
rosa_roxburghii	Rroxscaffold_5G00383340 Rroxscaffold_5G00383620
rosa_rugosa	Rorug04G0343600
rosa_samantha	Rh4AG392000 Rh4AG393000 Rh4AG393300 Rh4AG396000 Rh4AG397300 Rh4BG406500
rosa_wichuraiana	Rw4G033860 Rw4G033950 Rw4G033970 Rw4G033980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	584
AasI	GACNNNNNNGTC	1 cut(s)	854
AciI	CCGC	5 cut(s)	101, 256, 325, 389, 882
AcsI	RAATTY	7 cut(s)	400, 479, 572, 686, 764, 786, 938
AcuI	CTGAAG	1 cut(s)	749
AcvI	CACGTG	1 cut(s)	273
AfaI	GTAC	2 cut(s)	140, 505
AfiI	CCNNNNNNNGG	1 cut(s)	867
AflIII	ACRYGT	1 cut(s)	272
AhlI	ACTAGT	1 cut(s)	71
AjuI	GAANNNNNNNTTGG	2 cut(s)	243, 275
AluBI	AGCT	3 cut(s)	14, 197, 356
AluI	AGCT	3 cut(s)	14, 197, 356
Alw26I	GTCTC	4 cut(s)	69, 258, 683, 862
ApeKI	GCWGC	1 cut(s)	696
ApoI	RAATTY	7 cut(s)	400, 479, 572, 686, 764, 786, 938
Asp700I	GAANNNNTTC	1 cut(s)	764
AsuHPI	GGTGA	4 cut(s)	19, 430, 445, 765
AsuII	TTCGAA	1 cut(s)	171
BaeGI	GKGCMC	1 cut(s)	224
BbrPI	CACGTG	1 cut(s)	273
BbvI	GCAGC	1 cut(s)	683
BccI	CCATC	3 cut(s)	236, 546, 847
BciVI	GTATCC	2 cut(s)	52, 718
BcoDI	GTCTC	4 cut(s)	69, 258, 683, 862
BcuI	ACTAGT	1 cut(s)	71
BfaI	CTAG	2 cut(s)	72, 797
BfuI	GTATCC	2 cut(s)	52, 718
BglII	AGATCT	1 cut(s)	724
BisI	GCNGC	3 cut(s)	256, 326, 697
BlsI	GCNGC	3 cut(s)	257, 327, 698
BmsI	GCATC	2 cut(s)	798, 913
BpmI	CTGGAG	1 cut(s)	104
Bpu14I	TTCGAA	1 cut(s)	171
BpuEI	CTTGAG	1 cut(s)	281
BsaAI	YACGTR	1 cut(s)	273
BsaI	GGTCTC	1 cut(s)	862
BsaJI	CCNNGG	1 cut(s)	35
Bsc4I	CCNNNNNNNGG	1 cut(s)	867
Bse3DI	GCAATG	1 cut(s)	776
BseDI	CCNNGG	1 cut(s)	35
BseGI	GGATG	3 cut(s)	136, 574, 813
BseLI	CCNNNNNNNGG	1 cut(s)	867
BseMI	GCAATG	1 cut(s)	776
BseSI	GKGCMC	1 cut(s)	224
BseXI	GCAGC	1 cut(s)	683
BslI	CCNNNNNNNGG	1 cut(s)	867
BsmAI	GTCTC	4 cut(s)	69, 258, 683, 862
BsmI	GAATGC	2 cut(s)	257, 792
Bso31I	GGTCTC	1 cut(s)	862
Bsp119I	TTCGAA	1 cut(s)	171
Bsp1286I	GDGCHC	1 cut(s)	224
Bsp143I	GATC	2 cut(s)	420, 724
BspACI	CCGC	5 cut(s)	101, 256, 325, 389, 882
BspT104I	TTCGAA	1 cut(s)	171
BspTNI	GGTCTC	1 cut(s)	862
BsrDI	GCAATG	1 cut(s)	776
BssECI	CCNNGG	1 cut(s)	35
BssMI	GATC	2 cut(s)	420, 724
BssT1I	CCWWGG	1 cut(s)	35
Bst4CI	ACNGT	2 cut(s)	63, 917
Bst6I	CTCTTC	3 cut(s)	206, 655, 775
BstBAI	YACGTR	1 cut(s)	273
BstBI	TTCGAA	1 cut(s)	171
BstC8I	GCNNGC	1 cut(s)	323
BstDEI	CTNAG	1 cut(s)	357
BstF5I	GGATG	3 cut(s)	136, 574, 813
BstKTI	GATC	2 cut(s)	423, 727
BstMAI	GTCTC	4 cut(s)	69, 258, 683, 862
BstMBI	GATC	2 cut(s)	420, 724
BstMWI	GCNNNNNNNGC	2 cut(s)	56, 881
BstSLI	GKGCMC	1 cut(s)	224
BstV1I	GCAGC	1 cut(s)	683
BstX2I	RGATCY	1 cut(s)	724
BstYI	RGATCY	1 cut(s)	724
BsuI	GTATCC	2 cut(s)	52, 718
BtsCI	GGATG	3 cut(s)	136, 574, 813
BtsIMutI	CAGTG	2 cut(s)	242, 599
Cac8I	GCNNGC	1 cut(s)	323
Csp6I	GTAC	2 cut(s)	139, 504
CviAII	CATG	1 cut(s)	163
CviJI	RGCY	6 cut(s)	14, 197, 328, 356, 515, 734
CviKI_1	RGCY	6 cut(s)	14, 197, 328, 356, 515, 734
CviQI	GTAC	2 cut(s)	139, 504
DdeI	CTNAG	1 cut(s)	357
DpnI	GATC	2 cut(s)	422, 726
DpnII	GATC	2 cut(s)	420, 724
DraI	TTTAAA	1 cut(s)	564
DrdI	GACNNNNNNGTC	1 cut(s)	854
DseDI	GACNNNNNNGTC	1 cut(s)	854
Eam1104I	CTCTTC	3 cut(s)	206, 655, 775
EarI	CTCTTC	3 cut(s)	206, 655, 775
Eco130I	CCWWGG	1 cut(s)	35
Eco31I	GGTCTC	1 cut(s)	862
Eco32I	GATATC	1 cut(s)	497
Eco57I	CTGAAG	1 cut(s)	749
Eco72I	CACGTG	1 cut(s)	273
EcoRI	GAATTC	1 cut(s)	764
EcoRV	GATATC	1 cut(s)	497
EcoT14I	CCWWGG	1 cut(s)	35
EcoT22I	ATGCAT	1 cut(s)	928
ErhI	CCWWGG	1 cut(s)	35
FaeI	CATG	1 cut(s)	166
FaiI	YATR	8 cut(s)	23, 25, 90, 98, 164, 475, 584, 717
FalI	AAGNNNNNCTT	2 cut(s)	407, 439
FatI	CATG	1 cut(s)	162
Fnu4HI	GCNGC	3 cut(s)	256, 326, 697
FokI	GGATG	3 cut(s)	143, 581, 820
Fsp4HI	GCNGC	3 cut(s)	256, 326, 697
FspBI	CTAG	2 cut(s)	72, 797
GluI	GCNGC	3 cut(s)	256, 326, 697
GsuI	CTGGAG	1 cut(s)	104
Hin1II	CATG	1 cut(s)	166
HinfI	GANTC	1 cut(s)	368
HphI	GGTGA	4 cut(s)	19, 430, 445, 765
Hpy166II	GTNNAC	1 cut(s)	506
Hpy188I	TCNGA	2 cut(s)	729, 934
Hpy188III	TCNNGA	6 cut(s)	83, 424, 601, 614, 722, 797
Hpy8I	GTNNAC	1 cut(s)	506
HpyAV	CCTTC	7 cut(s)	152, 178, 234, 445, 724, 754, 888
HpyCH4III	ACNGT	2 cut(s)	63, 917
HpyCH4IV	ACGT	1 cut(s)	272
HpyF10VI	GCNNNNNNNGC	2 cut(s)	56, 881
HpyF3I	CTNAG	1 cut(s)	357
HpySE526I	ACGT	1 cut(s)	272
Hsp92II	CATG	1 cut(s)	166
Kzo9I	GATC	2 cut(s)	420, 724
LpnPI	CCDG	2 cut(s)	68, 607
Lsp1109I	GCAGC	1 cut(s)	683
LweI	GCATC	2 cut(s)	798, 913
MaeI	CTAG	2 cut(s)	72, 797
MaeII	ACGT	1 cut(s)	272
MaeIII	GTNAC	1 cut(s)	240
MalI	GATC	2 cut(s)	422, 726
MboI	GATC	2 cut(s)	420, 724
MboII	GAAGA	4 cut(s)	137, 193, 642, 762
MflI	RGATCY	1 cut(s)	724
MhlI	GDGCHC	1 cut(s)	224
MluCI	AATT	9 cut(s)	332, 400, 479, 572, 631, 686, 764, 786, 938
MnlI	CCTC	3 cut(s)	160, 722, 793
Mph1103I	ATGCAT	1 cut(s)	928
MroXI	GAANNNNTTC	1 cut(s)	764
MseI	TTAA	4 cut(s)	123, 155, 312, 563
Mva1269I	GAATGC	2 cut(s)	257, 792
MwoI	GCNNNNNNNGC	2 cut(s)	56, 881
NdeII	GATC	2 cut(s)	420, 724
NlaIII	CATG	1 cut(s)	166
NmuCI	GTSAC	1 cut(s)	240
NsiI	ATGCAT	1 cut(s)	928
NspV	TTCGAA	1 cut(s)	171
PctI	GAATGC	2 cut(s)	257, 792
PdmI	GAANNNNTTC	1 cut(s)	764
PfeI	GAWTC	1 cut(s)	368
PkrI	GCNGC	3 cut(s)	257, 327, 698
PmaCI	CACGTG	1 cut(s)	273
PmlI	CACGTG	1 cut(s)	273
Ppu21I	YACGTR	1 cut(s)	273
PsiI	TTATAA	1 cut(s)	584
PspCI	CACGTG	1 cut(s)	273
PsuI	RGATCY	1 cut(s)	724
RsaI	GTAC	2 cut(s)	140, 505
RsaNI	GTAC	2 cut(s)	139, 504
SaqAI	TTAA	4 cut(s)	123, 155, 312, 563
SatI	GCNGC	3 cut(s)	256, 326, 697
Sau3AI	GATC	2 cut(s)	420, 724
SduI	GDGCHC	1 cut(s)	224
SfaNI	GCATC	2 cut(s)	798, 913
SfuI	TTCGAA	1 cut(s)	171
SmlI	CTYRAG	1 cut(s)	296
SmoI	CTYRAG	1 cut(s)	296
SpeI	ACTAGT	1 cut(s)	71
Sse9I	AATT	9 cut(s)	332, 400, 479, 572, 631, 686, 764, 786, 938
SsiI	CCGC	5 cut(s)	101, 256, 325, 389, 882
SspMI	CTAG	2 cut(s)	72, 797
StyI	CCWWGG	1 cut(s)	35
TaaI	ACNGT	2 cut(s)	63, 917
TaiI	ACGT	1 cut(s)	275
TaqI	TCGA	5 cut(s)	171, 522, 546, 613, 846
TasI	AATT	9 cut(s)	332, 400, 479, 572, 631, 686, 764, 786, 938
TauI	GCSGC	2 cut(s)	258, 328
TfiI	GAWTC	1 cut(s)	368
Tru1I	TTAA	4 cut(s)	123, 155, 312, 563
Tru9I	TTAA	4 cut(s)	123, 155, 312, 563
TscAI	CASTG	2 cut(s)	249, 599
TseFI	GTSAC	1 cut(s)	240
TseI	GCWGC	1 cut(s)	696
Tsp45I	GTSAC	1 cut(s)	240
TspDTI	ATGAA	3 cut(s)	147, 366, 585
TspGWI	ACGGA	1 cut(s)	507
TspRI	CASTG	2 cut(s)	249, 599
XapI	RAATTY	7 cut(s)	400, 479, 572, 686, 764, 786, 938
XbaI	TCTAGA	1 cut(s)	796
XmnI	GAANNNNTTC	1 cut(s)	764
XspI	CTAG	2 cut(s)	72, 797
Zsp2I	ATGCAT	1 cut(s)	928

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.