Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0004540

Physical Location & Seq

Genomic Coordinates Reverse (-)

62973654 .. 62974104

Gene Structure 451 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00383340.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

ATGACCACAGCTCCGAGCTCCGTACTCTGCGCCAATGAATGGCGAAAGCAACCCAAACACGAGTCCGACATCAACCTCCACCTTCCCGTGACTAGACTCACCGGAGGAACCTTGGACATCTCCATCAAGTTCGTTCTAGCAGCCACTCCGAGCTCCATCTCCGCAAAGGCCGGTGTACACATGGTTCCGGCGAACGGAGCCGTCTCAAAGCTTTGGTGTCACCCTTCAAAGGCCGTTCCGGCGACCAAAGGTCCGAGCTCAAGCACCGCTACGGTGGAGGCCGACATGGTTCCCACGACCGGAGCCATCGCCGACATAGAGAACGGCATCAACCTCCTCCTTCCCCGTCACCGGAGCAATCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

121

Amino Acids

12.7

Weight (kDa)

9.14

Isoelectric Point (pI)

43.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004540)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g33180 FvH4_4g33210 FvH4_4g33310 FvH4_4g33501
rosa_chinensis	RchiOBHm_Chr4g0442321 RchiOBHm_Chr4g0442821 RchiOBHm_Chr4g0442851 RchiOBHm_Chr4g0442941
rosa_multiflora	Rmu_co8426117.1_g000001 Rmu_sc0000124.1_g000038 Rmu_sc0000124.1_g000050 Rmu_sc0000124.1_g000054 Rmu_sc0007295.1_g000003 Rmu_sc0041664.1_g000001 Rmu_ssc0000204.1_g000015 Rmu_ssc0000204.1_g000016 Rmu_ssc0000204.1_g000050 Rmu_ssc0000204.1_g000053 Rmu_ssc0000204.1_g000057
rosa_roxburghii	Rroxscaffold_5G00383340 Rroxscaffold_5G00383620
rosa_rugosa	Rorug04G0343600
rosa_samantha	Rh4AG392000 Rh4AG393000 Rh4AG393300 Rh4AG396000 Rh4AG397300 Rh4BG406500
rosa_wichuraiana	Rw4G033860 Rw4G033950 Rw4G033970 Rw4G033980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	39
AciI	CCGC	2 cut(s)	162, 267
AfaI	GTAC	2 cut(s)	24, 177
AfiI	CCNNNNNNNGG	5 cut(s)	39, 194, 229, 299, 351
AgsI	TTSAA	1 cut(s)	228
AhdI	GACNNNNNGTC	1 cut(s)	249
AluBI	AGCT	5 cut(s)	11, 18, 153, 211, 258
AluI	AGCT	5 cut(s)	11, 18, 153, 211, 258
Alw21I	GWGCWC	3 cut(s)	20, 155, 260
Alw26I	GTCTC	1 cut(s)	208
AoxI	GGCC	3 cut(s)	168, 231, 279
ApeKI	GCWGC	1 cut(s)	140
AspLEI	GCGC	1 cut(s)	32
AspS9I	GGNCC	1 cut(s)	251
AsuHPI	GGTGA	3 cut(s)	91, 212, 341
AvaII	GGWCC	1 cut(s)	251
BanII	GRGCYC	3 cut(s)	20, 155, 260
BauI	CACGAG	1 cut(s)	59
Bbv12I	GWGCWC	3 cut(s)	20, 155, 260
BbvI	GCAGC	1 cut(s)	152
BccI	CCATC	3 cut(s)	131, 164, 314
BceAI	ACGGC	3 cut(s)	185, 218, 340
BcoDI	GTCTC	1 cut(s)	208
BfaI	CTAG	2 cut(s)	93, 137
BglI	GCCNNNNNGGC	1 cut(s)	239
BisI	GCNGC	1 cut(s)	141
BlsI	GCNGC	1 cut(s)	142
Bme18I	GGWCC	1 cut(s)	251
BmeRI	GACNNNNNGTC	1 cut(s)	249
BmgT120I	GGNCC	1 cut(s)	251
BmiI	GGNNCC	5 cut(s)	109, 186, 199, 291, 304
BmsI	GCATC	1 cut(s)	336
BpuEI	CTTGAG	1 cut(s)	244
BsaJI	CCNNGG	1 cut(s)	111
BsaWI	WCCGGW	3 cut(s)	101, 299, 351
BsaXI	ACNNNNNCTCC	1 cut(s)	25
Bsc4I	CCNNNNNNNGG	5 cut(s)	39, 194, 229, 299, 351
Bse118I	RCCGGY	1 cut(s)	170
BseDI	CCNNGG	1 cut(s)	111
BseLI	CCNNNNNNNGG	5 cut(s)	39, 194, 229, 299, 351
BseRI	GAGGAG	1 cut(s)	326
BseXI	GCAGC	1 cut(s)	152
Bsh1285I	CGRYCG	1 cut(s)	300
BshFI	GGCC	3 cut(s)	170, 233, 281
BsiEI	CGRYCG	1 cut(s)	300
BsiHKAI	GWGCWC	3 cut(s)	20, 155, 260
BsiSI	CCGG	6 cut(s)	102, 171, 188, 239, 300, 352
BslI	CCNNNNNNNGG	5 cut(s)	39, 194, 229, 299, 351
BsmAI	GTCTC	1 cut(s)	208
BsmBI	CGTCTC	1 cut(s)	208
BsnI	GGCC	3 cut(s)	170, 233, 281
Bsp1286I	GDGCHC	3 cut(s)	20, 155, 260
Bsp1407I	TGTACA	1 cut(s)	175
BspACI	CCGC	2 cut(s)	162, 267
BspANI	GGCC	3 cut(s)	170, 233, 281
BspLI	GGNNCC	5 cut(s)	109, 186, 199, 291, 304
BsrFI	RCCGGY	1 cut(s)	170
BsrGI	TGTACA	1 cut(s)	175
BssAI	RCCGGY	1 cut(s)	170
BssECI	CCNNGG	1 cut(s)	111
BssSI	CACGAG	1 cut(s)	59
BssT1I	CCWWGG	1 cut(s)	111
Bst2BI	CACGAG	1 cut(s)	59
Bst4CI	ACNGT	1 cut(s)	274
BstAUI	TGTACA	1 cut(s)	175
BstHHI	GCGC	1 cut(s)	32
BstMAI	GTCTC	1 cut(s)	208
BstMCI	CGRYCG	1 cut(s)	300
BstMWI	GCNNNNNNNGC	2 cut(s)	197, 239
BstV1I	GCAGC	1 cut(s)	152
BsuRI	GGCC	3 cut(s)	170, 233, 281
BtgZI	GCGATG	1 cut(s)	292
CfoI	GCGC	1 cut(s)	32
Cfr10I	RCCGGY	1 cut(s)	170
Cfr13I	GGNCC	1 cut(s)	251
Csp6I	GTAC	2 cut(s)	23, 176
CviAII	CATG	2 cut(s)	181, 286
CviQI	GTAC	2 cut(s)	23, 176
DriI	GACNNNNNGTC	1 cut(s)	249
Eam1105I	GACNNNNNGTC	1 cut(s)	249
Ecl136II	GAGCTC	3 cut(s)	18, 153, 258
Eco130I	CCWWGG	1 cut(s)	111
Eco24I	GRGCYC	3 cut(s)	20, 155, 260
Eco47I	GGWCC	1 cut(s)	251
Eco53kI	GAGCTC	3 cut(s)	18, 153, 258
EcoICRI	GAGCTC	3 cut(s)	18, 153, 258
EcoT14I	CCWWGG	1 cut(s)	111
EcoT38I	GRGCYC	3 cut(s)	20, 155, 260
ErhI	CCWWGG	1 cut(s)	111
Esp3I	CGTCTC	1 cut(s)	208
FaeI	CATG	2 cut(s)	184, 289
FaiI	YATR	3 cut(s)	182, 287, 317
FatI	CATG	2 cut(s)	180, 285
Fnu4HI	GCNGC	1 cut(s)	141
FriOI	GRGCYC	3 cut(s)	20, 155, 260
Fsp4HI	GCNGC	1 cut(s)	141
FspBI	CTAG	2 cut(s)	93, 137
GlaI	GCGC	1 cut(s)	31
GluI	GCNGC	1 cut(s)	141
HaeIII	GGCC	3 cut(s)	170, 233, 281
HapII	CCGG	6 cut(s)	102, 171, 188, 239, 300, 352
HhaI	GCGC	1 cut(s)	32
Hin1II	CATG	2 cut(s)	184, 289
Hin6I	GCGC	1 cut(s)	30
HinP1I	GCGC	1 cut(s)	30
HindIII	AAGCTT	1 cut(s)	209
HinfI	GANTC	2 cut(s)	62, 96
HpaII	CCGG	6 cut(s)	102, 171, 188, 239, 300, 352
HphI	GGTGA	3 cut(s)	91, 212, 341
Hpy166II	GTNNAC	2 cut(s)	176, 178
Hpy188I	TCNGA	4 cut(s)	15, 67, 150, 255
Hpy8I	GTNNAC	2 cut(s)	176, 178
HpyAV	CCTTC	3 cut(s)	92, 234, 350
HpyCH4III	ACNGT	1 cut(s)	274
HpyF10VI	GCNNNNNNNGC	2 cut(s)	197, 239
Hsp92II	CATG	2 cut(s)	184, 289
HspAI	GCGC	1 cut(s)	30
LmnI	GCTCC	6 cut(s)	16, 23, 158, 197, 302, 354
LpnPI	CCDG	5 cut(s)	115, 184, 201, 252, 313
Lsp1109I	GCAGC	1 cut(s)	152
LweI	GCATC	1 cut(s)	336
MaeI	CTAG	2 cut(s)	93, 137
MaeIII	GTNAC	3 cut(s)	88, 218, 347
MhlI	GDGCHC	3 cut(s)	20, 155, 260
MlyI	GAGTC	2 cut(s)	71, 90
MmeI	TCCRAC	1 cut(s)	90
MnlI	CCTC	5 cut(s)	86, 98, 271, 344, 347
MspI	CCGG	6 cut(s)	102, 171, 188, 239, 300, 352
MwoI	GCNNNNNNNGC	2 cut(s)	197, 239
NlaIII	CATG	2 cut(s)	184, 289
NlaIV	GGNNCC	5 cut(s)	109, 186, 199, 291, 304
NmuCI	GTSAC	3 cut(s)	88, 218, 347
PflMI	CCANNNNNTGG	1 cut(s)	39
PkrI	GCNGC	1 cut(s)	142
PleI	GAGTC	2 cut(s)	70, 90
PpsI	GAGTC	2 cut(s)	70, 90
Psp124BI	GAGCTC	3 cut(s)	20, 155, 260
PspN4I	GGNNCC	5 cut(s)	109, 186, 199, 291, 304
PspPI	GGNCC	1 cut(s)	251
PsrI	GAACNNNNNNTAC	2 cut(s)	168, 200
RsaI	GTAC	2 cut(s)	24, 177
RsaNI	GTAC	2 cut(s)	23, 176
SacI	GAGCTC	3 cut(s)	20, 155, 260
SatI	GCNGC	1 cut(s)	141
Sau96I	GGNCC	1 cut(s)	251
SchI	GAGTC	2 cut(s)	71, 90
SduI	GDGCHC	3 cut(s)	20, 155, 260
SfaNI	GCATC	1 cut(s)	336
SinI	GGWCC	1 cut(s)	251
SmlI	CTYRAG	1 cut(s)	259
SmoI	CTYRAG	1 cut(s)	259
SsiI	CCGC	2 cut(s)	162, 267
SspMI	CTAG	2 cut(s)	93, 137
SstI	GAGCTC	3 cut(s)	20, 155, 260
StyI	CCWWGG	1 cut(s)	111
TaaI	ACNGT	1 cut(s)	274
TatI	WGTACW	1 cut(s)	175
TseFI	GTSAC	3 cut(s)	88, 218, 347
TseI	GCWGC	1 cut(s)	140
Tsp45I	GTSAC	3 cut(s)	88, 218, 347
TspDTI	ATGAA	1 cut(s)	51
TspGWI	ACGGA	2 cut(s)	10, 210
Van91I	CCANNNNNTGG	1 cut(s)	39
VpaK11BI	GGWCC	1 cut(s)	251
XspI	CTAG	2 cut(s)	93, 137

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.