Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0004540

Physical Location & Seq

Genomic Coordinates Reverse (-)

31575457 .. 31576997

Gene Structure 1541 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g33310.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1353 bp

ATGGCCATCGGCACAATGAAATCACCTCACATGCCTGACCTTCACAACTTACCTGACCTTGTTACTGACAAAATCCTTCAACTCCTTCCGACTAAAGCCGCCTTCCAGGTGAGCTTTCTTTCCAAGAATTGGCAAGGTGTAGTCTCTTCATGGCCTTCACTGAATTTTGATGAGGACGATGATTTCGACCGCCACCACCTTAAACGTCACAGTCACTACCAACTTCAACTTCAACACATAAGGTTCATCTACTTCTTGAAGGGGTATTTGGATTACCGCAAGAAGAACGACCAGAAAGAACCCCTAGATAAACTAAGGCTTCACATGAGGATGTATGAGCATCAGGATTTTTCTACCATAACCAAATGGTTGAAATATGCATGTCAGAGAGGCCTCAAAGAGCTGGATATCAGTCTGGTGAGTGTTGACAGTGAGCGCCTGGTGGAAATTTATCCTTACAACTACTTTTACAACTTGCCTTTGGTCGCCATTGCTACTGCAAAATCTCTAACTAGTTTAAAGCTGGAGTTTGTGAAAGTTCTGAAACTCTGGCAAGTTTACGAGGGACTTTTTCCGTCTTTGAAAATTCTGTCCTTGAAAGCTGTAAGGGTTGCTACTGGCCAACATCTCTATTCTGTTCTATGTCAGTGCCCTTCCATCGAGTCCCTCTCATTAAGTAATTGTTCGATTGGAAATTTAAAGTTTTATGTTTGCTGCTCAAGTCTCAAGTACTTGGAAGTTAAGTCATGCCTGCTTAATGATATTCGAGTTGATCACGCCTTCAATCTCGAATCTTTTACATATCTTTCACAGCCATATTCGGAATGTGGAAAGATGATATTGACTAATGCCTTCAACTTGAAATATATCAATATTTCTGTTGATAAGTACCTCGGGGAATTTTCTTTATGGGGATGCCATAATACACTAGAGGCCTCAATCAAGTCCAAACGGATCCATAGGTTCAAGTTATTTTATGGTTATTTGAATGCCAAGCTTTCCTTTAAAGCAGATCAGGCCACAATTTTAGTTGGGGAGCTTTGGAGCCAAGAACAGTTCTCGTCAGATTCAACATACGTTCCCAGGCTGGTGAGCTTCATTAAAAGTTTTAGCCGCTGCAAGGAAGTACGCCTCTACAATAAAAAAGTTCAGGCTCTCACCGTTTTTAAAAACTATAGAAAGATGACCTCTTTGCCACCATTGCCTGTAACTTCCACTTTGCTGGTGGGGATACCGAACCCACCAGTAGTAGGAAGTAGAGACTTTATAGAATTGGAGGACTCGTTGCGATGGATTGCACCTTCTGCAAAGGTGTTGATCATGCAGGTGGATGCTGAAGAAGACAGAAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box

Protein Analysis

451

Amino Acids

52.13

Weight (kDa)

9.08

Isoelectric Point (pI)

39.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_At1g61320_AtMIF1	PF23622	104 - 291	2e-13	At1g61320/AtMIF1, LRR domain
LRR_At5g56370	PF24758	121 - 289	3.6e-12	FBD-associated F-box protein At5g56370, LRR repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004540)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g33180 FvH4_4g33210 FvH4_4g33310 FvH4_4g33501
rosa_chinensis	RchiOBHm_Chr4g0442321 RchiOBHm_Chr4g0442821 RchiOBHm_Chr4g0442851 RchiOBHm_Chr4g0442941
rosa_multiflora	Rmu_co8426117.1_g000001 Rmu_sc0000124.1_g000038 Rmu_sc0000124.1_g000050 Rmu_sc0000124.1_g000054 Rmu_sc0007295.1_g000003 Rmu_sc0041664.1_g000001 Rmu_ssc0000204.1_g000015 Rmu_ssc0000204.1_g000016 Rmu_ssc0000204.1_g000050 Rmu_ssc0000204.1_g000053 Rmu_ssc0000204.1_g000057
rosa_roxburghii	Rroxscaffold_5G00383340 Rroxscaffold_5G00383620
rosa_rugosa	Rorug04G0343600
rosa_samantha	Rh4AG392000 Rh4AG393000 Rh4AG393300 Rh4AG396000 Rh4AG397300 Rh4BG406500
rosa_wichuraiana	Rw4G033860 Rw4G033950 Rw4G033970 Rw4G033980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1315
Acc36I	ACCTGC	1 cut(s)	1315
AccB7I	CCANNNNNTGG	1 cut(s)	129
AciI	CCGC	4 cut(s)	99, 190, 277, 1114
AclWI	GGATC	2 cut(s)	949, 962
AcoI	YGGCCR	2 cut(s)	3, 619
AcsI	RAATTY	5 cut(s)	163, 447, 585, 694, 899
AfaI	GTAC	3 cut(s)	731, 890, 1128
AfiI	CCNNNNNNNGG	3 cut(s)	129, 1120, 1250
AhlI	ACTAGT	1 cut(s)	512
AjnI	CCWGG	3 cut(s)	105, 438, 1082
AjuI	GAANNNNNNNTTGG	4 cut(s)	213, 245, 251, 283
AluBI	AGCT	7 cut(s)	114, 403, 523, 602, 997, 1039, 1095
AluI	AGCT	7 cut(s)	114, 403, 523, 602, 997, 1039, 1095
Alw26I	GTCTC	3 cut(s)	148, 728, 1254
AlwI	GGATC	2 cut(s)	949, 962
Ama87I	CYCGRG	1 cut(s)	893
AoxI	GGCC	6 cut(s)	3, 152, 391, 619, 933, 1017
ApeKI	GCWGC	2 cut(s)	714, 1116
ApoI	RAATTY	5 cut(s)	163, 447, 585, 694, 899
ArsI	GACNNNNNNTTYG	2 cut(s)	167, 199
AspLEI	GCGC	1 cut(s)	438
AsuHPI	GGTGA	5 cut(s)	15, 121, 430, 1102, 1150
AvaI	CYCGRG	1 cut(s)	893
BaeGI	GKGCMC	1 cut(s)	653
BalI	TGGCCA	2 cut(s)	5, 621
BamHI	GGATCC	1 cut(s)	954
BbsI	GAAGAC	1 cut(s)	1347
BbvI	GCAGC	2 cut(s)	701, 1103
BccI	CCATC	3 cut(s)	14, 665, 1284
BciT130I	CCWGG	3 cut(s)	107, 440, 1084
BciVI	GTATCC	1 cut(s)	1224
BclI	TGATCA	2 cut(s)	772, 1317
BcoDI	GTCTC	3 cut(s)	148, 728, 1254
BcuI	ACTAGT	1 cut(s)	512
BfaI	CTAG	3 cut(s)	305, 513, 929
BfmI	CTRYAG	1 cut(s)	1174
BfoI	RGCGCY	1 cut(s)	439
BfuAI	ACCTGC	1 cut(s)	1315
BfuI	GTATCC	1 cut(s)	1224
BisI	GCNGC	4 cut(s)	99, 715, 1114, 1117
BlsI	GCNGC	4 cut(s)	100, 716, 1115, 1118
BmcAI	AGTACT	1 cut(s)	731
Bme1390I	CCNGG	3 cut(s)	107, 440, 1084
BmeT110I	CYCGRG	1 cut(s)	893
BmiI	GGNNCC	2 cut(s)	956, 1046
BmrFI	CCNGG	3 cut(s)	107, 440, 1084
BmsI	GCATC	3 cut(s)	349, 905, 1321
BpiI	GAAGAC	1 cut(s)	1347
BplI	GAGNNNNNCTC	2 cut(s)	653, 685
BpmI	CTGGAG	1 cut(s)	545
BpuEI	CTTGAG	2 cut(s)	703, 710
BsaJI	CCNNGG	2 cut(s)	892, 1082
BsaXI	ACNNNNNCTCC	2 cut(s)	1268, 1298
Bsc4I	CCNNNNNNNGG	3 cut(s)	129, 1120, 1250
Bse1I	ACTGG	2 cut(s)	622, 1244
Bse3DI	GCAATG	2 cut(s)	489, 1199
BseBI	CCWGG	3 cut(s)	107, 440, 1084
BseDI	CCNNGG	2 cut(s)	892, 1082
BseGI	GGATG	3 cut(s)	336, 920, 1336
BseLI	CCNNNNNNNGG	3 cut(s)	129, 1120, 1250
BseMI	GCAATG	2 cut(s)	489, 1199
BseNI	ACTGG	2 cut(s)	622, 1244
BseSI	GKGCMC	1 cut(s)	653
BseXI	GCAGC	2 cut(s)	701, 1103
Bsh1285I	CGRYCG	1 cut(s)	190
BshFI	GGCC	6 cut(s)	5, 154, 393, 621, 935, 1019
BsiEI	CGRYCG	1 cut(s)	190
BsiHKCI	CYCGRG	1 cut(s)	893
BslFI	GGGAC	2 cut(s)	579, 649
BslI	CCNNNNNNNGG	3 cut(s)	129, 1120, 1250
BsmAI	GTCTC	3 cut(s)	148, 728, 1254
BsmFI	GGGAC	2 cut(s)	579, 649
BsmI	GAATGC	1 cut(s)	994
BsnI	GGCC	6 cut(s)	5, 154, 393, 621, 935, 1019
BsoBI	CYCGRG	1 cut(s)	893
Bsp1286I	GDGCHC	1 cut(s)	653
Bsp143I	GATC	4 cut(s)	772, 954, 1012, 1317
BspACI	CCGC	4 cut(s)	99, 190, 277, 1114
BspANI	GGCC	6 cut(s)	5, 154, 393, 621, 935, 1019
BspLI	GGNNCC	2 cut(s)	956, 1046
BspMI	ACCTGC	1 cut(s)	1315
BspPI	GGATC	2 cut(s)	949, 962
BsrDI	GCAATG	2 cut(s)	489, 1199
BsrI	ACTGG	2 cut(s)	622, 1244
BssECI	CCNNGG	2 cut(s)	892, 1082
BssMI	GATC	4 cut(s)	772, 954, 1012, 1317
Bst2UI	CCWGG	3 cut(s)	107, 440, 1084
Bst4CI	ACNGT	4 cut(s)	212, 431, 1056, 1162
Bst6I	CTCTTC	1 cut(s)	151
BstAPI	GCANNNNNTGC	1 cut(s)	1304
BstC8I	GCNNGC	1 cut(s)	752
BstDEI	CTNAG	1 cut(s)	314
BstF5I	GGATG	3 cut(s)	336, 920, 1336
BstH2I	RGCGCY	1 cut(s)	439
BstHHI	GCGC	1 cut(s)	438
BstKTI	GATC	4 cut(s)	775, 957, 1015, 1320
BstMAI	GTCTC	3 cut(s)	148, 728, 1254
BstMBI	GATC	4 cut(s)	772, 954, 1012, 1317
BstMCI	CGRYCG	1 cut(s)	190
BstMWI	GCNNNNNNNGC	3 cut(s)	1016, 1201, 1304
BstNI	CCWGG	3 cut(s)	107, 440, 1084
BstNSI	RCATGY	2 cut(s)	34, 384
BstSCI	CCNGG	3 cut(s)	105, 438, 1082
BstSFI	CTRYAG	1 cut(s)	1174
BstSLI	GKGCMC	1 cut(s)	653
BstV1I	GCAGC	2 cut(s)	701, 1103
BstV2I	GAAGAC	1 cut(s)	1347
BstX2I	RGATCY	1 cut(s)	954
BstXI	CCANNNNNNTGG	1 cut(s)	1222
BstYI	RGATCY	1 cut(s)	954
BsuI	GTATCC	1 cut(s)	1224
BsuRI	GGCC	6 cut(s)	5, 154, 393, 621, 935, 1019
BtgZI	GCGATG	1 cut(s)	1303
BtsCI	GGATG	3 cut(s)	336, 920, 1336
BtsIMutI	CAGTG	3 cut(s)	158, 436, 653
BveI	ACCTGC	1 cut(s)	1315
Cac8I	GCNNGC	1 cut(s)	752
CfoI	GCGC	1 cut(s)	438
Csp6I	GTAC	3 cut(s)	730, 889, 1127
CviAII	CATG	6 cut(s)	31, 150, 325, 381, 747, 1321
CviQI	GTAC	3 cut(s)	730, 889, 1127
DdeI	CTNAG	1 cut(s)	314
DpnI	GATC	4 cut(s)	774, 956, 1014, 1319
DpnII	GATC	4 cut(s)	772, 954, 1012, 1317
DraI	TTTAAA	4 cut(s)	519, 699, 1006, 1168
EaeI	YGGCCR	2 cut(s)	3, 619
Eam1104I	CTCTTC	1 cut(s)	151
EarI	CTCTTC	1 cut(s)	151
Eco147I	AGGCCT	2 cut(s)	393, 935
Eco32I	GATATC	1 cut(s)	409
Eco88I	CYCGRG	1 cut(s)	893
EcoRII	CCWGG	3 cut(s)	105, 438, 1082
EcoRV	GATATC	1 cut(s)	409
EcoT22I	ATGCAT	1 cut(s)	382
FaeI	CATG	6 cut(s)	34, 153, 328, 384, 750, 1324
FalI	AAGNNNNNCTT	2 cut(s)	986, 1018
FaqI	GGGAC	2 cut(s)	579, 649
FatI	CATG	6 cut(s)	30, 149, 324, 380, 746, 1320
FbaI	TGATCA	2 cut(s)	772, 1317
Fnu4HI	GCNGC	4 cut(s)	99, 715, 1114, 1117
FokI	GGATG	3 cut(s)	343, 927, 1343
Fsp4HI	GCNGC	4 cut(s)	99, 715, 1114, 1117
FspBI	CTAG	3 cut(s)	305, 513, 929
GlaI	GCGC	1 cut(s)	437
GluI	GCNGC	4 cut(s)	99, 715, 1114, 1117
GsuI	CTGGAG	1 cut(s)	545
HaeII	RGCGCY	1 cut(s)	439
HaeIII	GGCC	6 cut(s)	5, 154, 393, 621, 935, 1019
HhaI	GCGC	1 cut(s)	438
Hin1II	CATG	6 cut(s)	34, 153, 328, 384, 750, 1324
Hin6I	GCGC	1 cut(s)	436
HinP1I	GCGC	1 cut(s)	436
HincII	GTYRAC	1 cut(s)	427
HindII	GTYRAC	1 cut(s)	427
HindIII	AAGCTT	1 cut(s)	995
HinfI	GANTC	4 cut(s)	662, 791, 1067, 1280
HphI	GGTGA	5 cut(s)	15, 121, 430, 1102, 1150
Hpy166II	GTNNAC	2 cut(s)	427, 559
Hpy188I	TCNGA	5 cut(s)	90, 387, 543, 823, 1066
Hpy188III	TCNNGA	3 cut(s)	256, 344, 788
Hpy8I	GTNNAC	2 cut(s)	427, 559
HpyCH4III	ACNGT	4 cut(s)	212, 431, 1056, 1162
HpyCH4IV	ACGT	2 cut(s)	205, 1077
HpyCH4V	TGCA	6 cut(s)	380, 500, 1119, 1298, 1307, 1324
HpyF10VI	GCNNNNNNNGC	3 cut(s)	1016, 1201, 1304
HpyF3I	CTNAG	1 cut(s)	314
HpySE526I	ACGT	2 cut(s)	205, 1077
Hsp92II	CATG	6 cut(s)	34, 153, 328, 384, 750, 1324
HspAI	GCGC	1 cut(s)	436
Ksp22I	TGATCA	2 cut(s)	772, 1317
Kzo9I	GATC	4 cut(s)	772, 954, 1012, 1317
LmnI	GCTCC	2 cut(s)	1036, 1044
Lsp1109I	GCAGC	2 cut(s)	701, 1103
LweI	GCATC	3 cut(s)	349, 905, 1321
MaeI	CTAG	3 cut(s)	305, 513, 929
MaeII	ACGT	2 cut(s)	205, 1077
MaeIII	GTNAC	4 cut(s)	61, 206, 212, 1207
MalI	GATC	4 cut(s)	774, 956, 1014, 1319
MboI	GATC	4 cut(s)	772, 954, 1012, 1317
MboII	GAAGA	4 cut(s)	138, 295, 1349, 1352
MflI	RGATCY	1 cut(s)	954
MhlI	GDGCHC	1 cut(s)	653
MlsI	TGGCCA	2 cut(s)	5, 621
MluCI	AATT	9 cut(s)	127, 163, 447, 585, 679, 694, 899, 1023, 1271
MluNI	TGGCCA	2 cut(s)	5, 621
MlyI	GAGTC	2 cut(s)	671, 1274
MmeI	TCCRAC	1 cut(s)	113
Mox20I	TGGCCA	2 cut(s)	5, 621
Mph1103I	ATGCAT	1 cut(s)	382
MscI	TGGCCA	2 cut(s)	5, 621
MseI	TTAA	9 cut(s)	201, 518, 674, 698, 741, 756, 1005, 1101, 1167
MslI	CAYNNNNRTG	2 cut(s)	329, 1325
Msp20I	TGGCCA	2 cut(s)	5, 621
MspA1I	CMGCKG	1 cut(s)	1116
MspR9I	CCNGG	3 cut(s)	107, 440, 1084
Mva1269I	GAATGC	1 cut(s)	994
MvaI	CCWGG	3 cut(s)	107, 440, 1084
MwoI	GCNNNNNNNGC	3 cut(s)	1016, 1201, 1304
NdeII	GATC	4 cut(s)	772, 954, 1012, 1317
NlaIII	CATG	6 cut(s)	34, 153, 328, 384, 750, 1324
NlaIV	GGNNCC	2 cut(s)	956, 1046
NmuCI	GTSAC	2 cut(s)	206, 212
NsiI	ATGCAT	1 cut(s)	382
NspI	RCATGY	2 cut(s)	34, 384
PaqCI	CACCTGC	1 cut(s)	1315
PceI	AGGCCT	2 cut(s)	393, 935
PcsI	WCGNNNNNNNCGW	1 cut(s)	183
PctI	GAATGC	1 cut(s)	994
PfeI	GAWTC	2 cut(s)	791, 1067
PflMI	CCANNNNNTGG	1 cut(s)	129
PkrI	GCNGC	4 cut(s)	100, 716, 1115, 1118
PleI	GAGTC	2 cut(s)	670, 1274
PpsI	GAGTC	2 cut(s)	670, 1274
Psp6I	CCWGG	3 cut(s)	105, 438, 1082
PspGI	CCWGG	3 cut(s)	105, 438, 1082
PspN4I	GGNNCC	2 cut(s)	956, 1046
PsuI	RGATCY	1 cut(s)	954
RsaI	GTAC	3 cut(s)	731, 890, 1128
RsaNI	GTAC	3 cut(s)	730, 889, 1127
RseI	CAYNNNNRTG	2 cut(s)	329, 1325
SaqAI	TTAA	9 cut(s)	201, 518, 674, 698, 741, 756, 1005, 1101, 1167
SatI	GCNGC	4 cut(s)	99, 715, 1114, 1117
Sau3AI	GATC	4 cut(s)	772, 954, 1012, 1317
ScaI	AGTACT	1 cut(s)	731
SchI	GAGTC	2 cut(s)	671, 1274
ScrFI	CCNGG	3 cut(s)	107, 440, 1084
SduI	GDGCHC	1 cut(s)	653
SfaNI	GCATC	3 cut(s)	349, 905, 1321
SfcI	CTRYAG	1 cut(s)	1174
SmiMI	CAYNNNNRTG	2 cut(s)	329, 1325
SmlI	CTYRAG	2 cut(s)	718, 725
SmoI	CTYRAG	2 cut(s)	718, 725
SpeI	ACTAGT	1 cut(s)	512
Sse9I	AATT	9 cut(s)	127, 163, 447, 585, 679, 694, 899, 1023, 1271
SseBI	AGGCCT	2 cut(s)	393, 935
SsiI	CCGC	4 cut(s)	99, 190, 277, 1114
SspI	AATATT	1 cut(s)	874
SspMI	CTAG	3 cut(s)	305, 513, 929
StuI	AGGCCT	2 cut(s)	393, 935
StyD4I	CCNGG	3 cut(s)	105, 438, 1082
TaaI	ACNGT	4 cut(s)	212, 431, 1056, 1162
TaiI	ACGT	2 cut(s)	208, 1080
TaqI	TCGA	5 cut(s)	186, 660, 686, 766, 789
TasI	AATT	9 cut(s)	127, 163, 447, 585, 679, 694, 899, 1023, 1271
TatI	WGTACW	1 cut(s)	729
TauI	GCSGC	2 cut(s)	101, 1116
TfiI	GAWTC	2 cut(s)	791, 1067
Tru1I	TTAA	9 cut(s)	201, 518, 674, 698, 741, 756, 1005, 1101, 1167
Tru9I	TTAA	9 cut(s)	201, 518, 674, 698, 741, 756, 1005, 1101, 1167
TscAI	CASTG	3 cut(s)	165, 436, 653
TseFI	GTSAC	2 cut(s)	206, 212
TseI	GCWGC	2 cut(s)	714, 1116
Tsp45I	GTSAC	2 cut(s)	206, 212
TspDTI	ATGAA	4 cut(s)	32, 138, 235, 1087
TspGWI	ACGGA	2 cut(s)	564, 967
TspRI	CASTG	3 cut(s)	165, 436, 653
Van91I	CCANNNNNTGG	1 cut(s)	129
XapI	RAATTY	5 cut(s)	163, 447, 585, 694, 899
XceI	RCATGY	2 cut(s)	34, 384
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1222
XspI	CTAG	3 cut(s)	305, 513, 929
ZrmI	AGTACT	1 cut(s)	731
Zsp2I	ATGCAT	1 cut(s)	382

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.