Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0004540

Physical Location & Seq

Genomic Coordinates Reverse (-)

55658942 .. 55659393

Gene Structure 452 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG406500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

ATGGACGGCGAAAGCAACCCAAACACAGAGTCCGACATCAACCTCCACCTTCCGGTGACTAGACTCACCGGAGGAACCTTGGTCATCTCCATCAAGTTCGTTCCAGCAGCCACTCCGAGCTCCACCTCTGCAAAGGCCGGTGTACACATGGTTTCGGCGATCGGAGCCATCTCAGGCTTTGGTGTCAGCCCTTCAGAGGCCGTTTCGGCGACCAAAGGTCCGAGCTCAAGCACTGCTACAGTGGAGGCCGACATGGTTCCCGCGACCGGAGCCGTCGCTGACATAGAGAACGACATCAACCTCCTCCTTCTTGTCACCGGAGCAGTCTCTAACACCAGAGCTCTCCACTCGAAACAAGTCTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

121

Amino Acids

12.09

Weight (kDa)

5.1

Isoelectric Point (pI)

33.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004540)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g33180 FvH4_4g33210 FvH4_4g33310 FvH4_4g33501
rosa_chinensis	RchiOBHm_Chr4g0442321 RchiOBHm_Chr4g0442821 RchiOBHm_Chr4g0442851 RchiOBHm_Chr4g0442941
rosa_multiflora	Rmu_co8426117.1_g000001 Rmu_sc0000124.1_g000038 Rmu_sc0000124.1_g000050 Rmu_sc0000124.1_g000054 Rmu_sc0007295.1_g000003 Rmu_sc0041664.1_g000001 Rmu_ssc0000204.1_g000015 Rmu_ssc0000204.1_g000016 Rmu_ssc0000204.1_g000050 Rmu_ssc0000204.1_g000053 Rmu_ssc0000204.1_g000057
rosa_roxburghii	Rroxscaffold_5G00383340 Rroxscaffold_5G00383620
rosa_rugosa	Rorug04G0343600
rosa_samantha	Rh4AG392000 Rh4AG393000 Rh4AG393300 Rh4AG396000 Rh4AG397300 Rh4BG406500
rosa_wichuraiana	Rw4G033860 Rw4G033950 Rw4G033970 Rw4G033980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	263
AciI	CCGC	1 cut(s)	261
AcuI	CTGAAG	1 cut(s)	177
AfaI	GTAC	1 cut(s)	144
AfiI	CCNNNNNNNGG	3 cut(s)	52, 196, 266
AhdI	GACNNNNNGTC	1 cut(s)	216
AluBI	AGCT	3 cut(s)	120, 225, 341
AluI	AGCT	3 cut(s)	120, 225, 341
Alw21I	GWGCWC	3 cut(s)	122, 227, 343
Alw26I	GTCTC	1 cut(s)	331
AoxI	GGCC	3 cut(s)	135, 198, 246
ApeKI	GCWGC	1 cut(s)	107
ArsI	GACNNNNNNTTYG	2 cut(s)	14, 46
AspS9I	GGNCC	1 cut(s)	218
AsuHPI	GGTGA	3 cut(s)	58, 67, 307
AvaII	GGWCC	1 cut(s)	218
BanII	GRGCYC	3 cut(s)	122, 227, 343
Bbv12I	GWGCWC	3 cut(s)	122, 227, 343
BbvI	GCAGC	1 cut(s)	119
BccI	CCATC	2 cut(s)	98, 176
BceAI	ACGGC	3 cut(s)	22, 185, 257
BcoDI	GTCTC	1 cut(s)	331
BfaI	CTAG	1 cut(s)	60
BfmI	CTRYAG	1 cut(s)	237
BglI	GCCNNNNNGGC	1 cut(s)	206
BisI	GCNGC	1 cut(s)	108
BlsI	GCNGC	1 cut(s)	109
Bme18I	GGWCC	1 cut(s)	218
BmeRI	GACNNNNNGTC	1 cut(s)	216
BmgT120I	GGNCC	1 cut(s)	218
BmiI	GGNNCC	4 cut(s)	76, 166, 258, 271
BpuEI	CTTGAG	1 cut(s)	211
BsaJI	CCNNGG	1 cut(s)	78
BsaWI	WCCGGW	4 cut(s)	52, 68, 266, 317
Bsc4I	CCNNNNNNNGG	3 cut(s)	52, 196, 266
Bse118I	RCCGGY	1 cut(s)	137
BseDI	CCNNGG	1 cut(s)	78
BseLI	CCNNNNNNNGG	3 cut(s)	52, 196, 266
BseMII	CTCAG	1 cut(s)	186
BseRI	GAGGAG	1 cut(s)	293
BseXI	GCAGC	1 cut(s)	119
Bsh1236I	CGCG	1 cut(s)	263
Bsh1285I	CGRYCG	2 cut(s)	162, 267
BshFI	GGCC	3 cut(s)	137, 200, 248
BsiEI	CGRYCG	2 cut(s)	162, 267
BsiHKAI	GWGCWC	3 cut(s)	122, 227, 343
BsiSI	CCGG	5 cut(s)	53, 69, 138, 267, 318
BslI	CCNNNNNNNGG	3 cut(s)	52, 196, 266
BsmAI	GTCTC	1 cut(s)	331
BsnI	GGCC	3 cut(s)	137, 200, 248
Bsp1286I	GDGCHC	3 cut(s)	122, 227, 343
Bsp1407I	TGTACA	1 cut(s)	142
Bsp143I	GATC	1 cut(s)	159
BspACI	CCGC	1 cut(s)	261
BspANI	GGCC	3 cut(s)	137, 200, 248
BspCNI	CTCAG	1 cut(s)	185
BspFNI	CGCG	1 cut(s)	263
BspHI	TCATGA	1 cut(s)	362
BspLI	GGNNCC	4 cut(s)	76, 166, 258, 271
BsrFI	RCCGGY	1 cut(s)	137
BsrGI	TGTACA	1 cut(s)	142
BssAI	RCCGGY	1 cut(s)	137
BssECI	CCNNGG	1 cut(s)	78
BssMI	GATC	1 cut(s)	159
BssT1I	CCWWGG	1 cut(s)	78
Bst4CI	ACNGT	1 cut(s)	241
BstAUI	TGTACA	1 cut(s)	142
BstDEI	CTNAG	1 cut(s)	172
BstFNI	CGCG	1 cut(s)	263
BstKTI	GATC	1 cut(s)	162
BstMAI	GTCTC	1 cut(s)	331
BstMBI	GATC	1 cut(s)	159
BstMCI	CGRYCG	2 cut(s)	162, 267
BstMWI	GCNNNNNNNGC	3 cut(s)	164, 206, 269
BstSFI	CTRYAG	1 cut(s)	237
BstUI	CGCG	1 cut(s)	263
BstV1I	GCAGC	1 cut(s)	119
BsuRI	GGCC	3 cut(s)	137, 200, 248
BtsI	GCAGTG	1 cut(s)	231
BtsIMutI	CAGTG	2 cut(s)	231, 246
CciI	TCATGA	1 cut(s)	362
Cfr10I	RCCGGY	1 cut(s)	137
Cfr13I	GGNCC	1 cut(s)	218
Csp6I	GTAC	1 cut(s)	143
CviAII	CATG	3 cut(s)	148, 253, 363
CviQI	GTAC	1 cut(s)	143
DdeI	CTNAG	1 cut(s)	172
DpnI	GATC	1 cut(s)	161
DpnII	GATC	1 cut(s)	159
DriI	GACNNNNNGTC	1 cut(s)	216
Eam1105I	GACNNNNNGTC	1 cut(s)	216
Ecl136II	GAGCTC	3 cut(s)	120, 225, 341
Eco130I	CCWWGG	1 cut(s)	78
Eco24I	GRGCYC	3 cut(s)	122, 227, 343
Eco47I	GGWCC	1 cut(s)	218
Eco53kI	GAGCTC	3 cut(s)	120, 225, 341
Eco57I	CTGAAG	1 cut(s)	177
EcoICRI	GAGCTC	3 cut(s)	120, 225, 341
EcoT14I	CCWWGG	1 cut(s)	78
EcoT38I	GRGCYC	3 cut(s)	122, 227, 343
ErhI	CCWWGG	1 cut(s)	78
FaeI	CATG	3 cut(s)	151, 256, 366
FaiI	YATR	4 cut(s)	149, 254, 284, 364
FatI	CATG	3 cut(s)	147, 252, 362
FauI	CCCGC	1 cut(s)	268
Fnu4HI	GCNGC	1 cut(s)	108
FriOI	GRGCYC	3 cut(s)	122, 227, 343
Fsp4HI	GCNGC	1 cut(s)	108
FspBI	CTAG	1 cut(s)	60
GluI	GCNGC	1 cut(s)	108
HaeIII	GGCC	3 cut(s)	137, 200, 248
HapII	CCGG	5 cut(s)	53, 69, 138, 267, 318
Hin1II	CATG	3 cut(s)	151, 256, 366
HinfI	GANTC	2 cut(s)	29, 63
HpaII	CCGG	5 cut(s)	53, 69, 138, 267, 318
HphI	GGTGA	3 cut(s)	58, 67, 307
Hpy166II	GTNNAC	2 cut(s)	143, 145
Hpy188I	TCNGA	5 cut(s)	34, 117, 164, 196, 222
Hpy188III	TCNNGA	1 cut(s)	363
Hpy8I	GTNNAC	2 cut(s)	143, 145
Hpy99I	CGWCG	1 cut(s)	278
HpyAV	CCTTC	3 cut(s)	59, 201, 317
HpyCH4III	ACNGT	1 cut(s)	241
HpyCH4V	TGCA	1 cut(s)	131
HpyF10VI	GCNNNNNNNGC	3 cut(s)	164, 206, 269
HpyF3I	CTNAG	1 cut(s)	172
Hsp92II	CATG	3 cut(s)	151, 256, 366
Kzo9I	GATC	1 cut(s)	159
LmnI	GCTCC	4 cut(s)	125, 164, 269, 320
LpnPI	CCDG	8 cut(s)	66, 82, 117, 151, 159, 280, 331, 349
Lsp1109I	GCAGC	1 cut(s)	119
MaeI	CTAG	1 cut(s)	60
MaeIII	GTNAC	2 cut(s)	55, 313
MalI	GATC	1 cut(s)	161
MboI	GATC	1 cut(s)	159
MhlI	GDGCHC	3 cut(s)	122, 227, 343
MlyI	GAGTC	2 cut(s)	38, 57
MmeI	TCCRAC	1 cut(s)	57
MnlI	CCTC	7 cut(s)	53, 65, 136, 190, 238, 311, 314
MspI	CCGG	5 cut(s)	53, 69, 138, 267, 318
MvnI	CGCG	1 cut(s)	263
MwoI	GCNNNNNNNGC	3 cut(s)	164, 206, 269
NdeII	GATC	1 cut(s)	159
NlaIII	CATG	3 cut(s)	151, 256, 366
NlaIV	GGNNCC	4 cut(s)	76, 166, 258, 271
NmuCI	GTSAC	2 cut(s)	55, 313
PagI	TCATGA	1 cut(s)	362
PkrI	GCNGC	1 cut(s)	109
Ple19I	CGATCG	1 cut(s)	162
PleI	GAGTC	2 cut(s)	37, 57
PpsI	GAGTC	2 cut(s)	37, 57
Psp124BI	GAGCTC	3 cut(s)	122, 227, 343
PspN4I	GGNNCC	4 cut(s)	76, 166, 258, 271
PspPI	GGNCC	1 cut(s)	218
PvuI	CGATCG	1 cut(s)	162
RsaI	GTAC	1 cut(s)	144
RsaNI	GTAC	1 cut(s)	143
SacI	GAGCTC	3 cut(s)	122, 227, 343
SatI	GCNGC	1 cut(s)	108
Sau3AI	GATC	1 cut(s)	159
Sau96I	GGNCC	1 cut(s)	218
SchI	GAGTC	2 cut(s)	38, 57
SduI	GDGCHC	3 cut(s)	122, 227, 343
SetI	ASST	9 cut(s)	45, 51, 80, 122, 128, 220, 227, 303, 343
SfcI	CTRYAG	1 cut(s)	237
SinI	GGWCC	1 cut(s)	218
SmlI	CTYRAG	1 cut(s)	226
SmoI	CTYRAG	1 cut(s)	226
SsiI	CCGC	1 cut(s)	261
SspMI	CTAG	1 cut(s)	60
SstI	GAGCTC	3 cut(s)	122, 227, 343
StyI	CCWWGG	1 cut(s)	78
TaaI	ACNGT	1 cut(s)	241
TaqI	TCGA	1 cut(s)	350
TatI	WGTACW	1 cut(s)	142
TscAI	CASTG	2 cut(s)	238, 246
TseFI	GTSAC	2 cut(s)	55, 313
TseI	GCWGC	1 cut(s)	107
Tsp45I	GTSAC	2 cut(s)	55, 313
TspRI	CASTG	2 cut(s)	238, 246
VpaK11BI	GGWCC	1 cut(s)	218
XspI	CTAG	1 cut(s)	60

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.