Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000124.1

Orthogroup ID

OG0004540

Physical Location & Seq

Genomic Coordinates Reverse (-)

200353 .. 201627

Gene Structure 1275 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000124.1_g000050.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1275 bp

atggccatcagcacattgggatcacctcacatggctgaccttcacaaccaacctgaccttgttattgacaaaatccttcgactccttcccacaaaagctgccatccaggtgagttttctttccaagcaatggcaaggggtagtctcttcattccctgaactaaatttcaacgaggatgatgattttgaccgccacaacttcaatcgtttcggtcactaccaacatcaagatcaacacaagaggttcatcaactttttgaaggggtatttagattatcgtgagaaatacgacaagaaagagctcctagataaactgagtcttcacatgaggaggtatgggcgtcgagattcttctaccataaccaagtggttgaaatatgcatgtcagagaggcctcaaagagttggatatcagtcctaaaatgagtgttgacccaaaacaatatggggttgtcactaagcgcccggacttctaccgcttgccttgggtggccattgctactgcaaaatctttaactagtctaaaactagagtctgtgagaatcccgcacgttcgactaagcgattttccaactcctgggcgatttttgaaattttttccgtctttgaaaactctgtccttcagaactgcacggttttttactgaccaagatctctattctgttctatatgagtgcccttccatcgagtacctgtcattaactgaatgttcgattggaaactccaagtgttatgtttgctgctcaagtctaaagtccttggaagttaagtattgccggcttcaagatattcgagttgatcaggccttcaatcttgaatcttttacatttgtctcaccgcgggattcaaaatgtgaaaagatgatcttgaataatgccttcaagttgacatatacaaacatttgtgttgattacctccaggaattttctttattgggaagccaccgtgcactagaggccaccatcattacccagtatatccaattcttcgagttctttgatggttatttgagtgccaacgtttctgtcaaagcctatgaggccacaattttagttggggaacttttggaccaagaatggttctcgtcatattcaacacattttcctaggctgataagctttattagaagatttagctgctgccagaaaataaacctctacaatcaagatgttcatgctctcattgttcctaaacaattggaaattttaaatttctctgtggaaaaaaacgaaggaattcgttatttaaatttctcacttcaatttccaccaaaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box

Protein Analysis

424

Amino Acids

49.61

Weight (kDa)

8.86

Isoelectric Point (pI)

39.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004540)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g33180 FvH4_4g33210 FvH4_4g33310 FvH4_4g33501
rosa_chinensis	RchiOBHm_Chr4g0442321 RchiOBHm_Chr4g0442821 RchiOBHm_Chr4g0442851 RchiOBHm_Chr4g0442941
rosa_multiflora	Rmu_co8426117.1_g000001 Rmu_sc0000124.1_g000038 Rmu_sc0000124.1_g000050 Rmu_sc0000124.1_g000054 Rmu_sc0007295.1_g000003 Rmu_sc0041664.1_g000001 Rmu_ssc0000204.1_g000015 Rmu_ssc0000204.1_g000016 Rmu_ssc0000204.1_g000050 Rmu_ssc0000204.1_g000053 Rmu_ssc0000204.1_g000057
rosa_roxburghii	Rroxscaffold_5G00383340 Rroxscaffold_5G00383620
rosa_rugosa	Rorug04G0343600
rosa_samantha	Rh4AG392000 Rh4AG393000 Rh4AG393300 Rh4AG396000 Rh4AG397300 Rh4BG406500
rosa_wichuraiana	Rw4G033860 Rw4G033950 Rw4G033970 Rw4G033980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	129, 575
AccII	CGCG	1 cut(s)	838
AciI	CCGC	5 cut(s)	190, 475, 545, 836, 838
AclI	AACGTT	1 cut(s)	1017
AclWI	GGATC	1 cut(s)	28
AcoI	YGGCCR	2 cut(s)	3, 489
AcsI	RAATTY	7 cut(s)	163, 590, 920, 1200, 1207, 1233, 1246
AcuI	CTGAAG	1 cut(s)	604
AcyI	GRCGYC	1 cut(s)	340
AfaI	GTAC	1 cut(s)	689
AfiI	CCNNNNNNNGG	2 cut(s)	129, 575
AhlI	ACTAGT	1 cut(s)	515
AjnI	CCWGG	3 cut(s)	105, 574, 915
AjuI	GAANNNNNNNTTGG	2 cut(s)	696, 728
AluBI	AGCT	4 cut(s)	98, 301, 1116, 1134
AluI	AGCT	4 cut(s)	98, 301, 1116, 1134
Alw21I	GWGCWC	2 cut(s)	303, 949
Alw26I	GTCTC	2 cut(s)	148, 835
Alw44I	GTGCAC	1 cut(s)	945
AlwI	GGATC	1 cut(s)	28
AoxI	GGCC	6 cut(s)	3, 391, 489, 801, 954, 1038
ApaLI	GTGCAC	1 cut(s)	945
ApeKI	GCWGC	4 cut(s)	98, 738, 1134, 1137
ApoI	RAATTY	7 cut(s)	163, 590, 920, 1200, 1207, 1233, 1246
Asp700I	GAANNNNTTC	1 cut(s)	1233
AspA2I	CCTAGG	1 cut(s)	1103
AspLEI	GCGC	1 cut(s)	462
AspS9I	GGNCC	1 cut(s)	1066
AsuC2I	CCSGG	1 cut(s)	464
AsuHPI	GGTGA	3 cut(s)	15, 121, 825
AvaII	GGWCC	1 cut(s)	1066
AvrII	CCTAGG	1 cut(s)	1103
BaeGI	GKGCMC	2 cut(s)	677, 949
BalI	TGGCCA	2 cut(s)	5, 491
BanII	GRGCYC	1 cut(s)	303
BbsI	GAAGAC	1 cut(s)	311
Bbv12I	GWGCWC	2 cut(s)	303, 949
BbvI	GCAGC	4 cut(s)	85, 725, 1121, 1124
BccI	CCATC	5 cut(s)	14, 110, 689, 968, 992
BciT130I	CCWGG	3 cut(s)	107, 576, 917
BclI	TGATCA	1 cut(s)	796
BcnI	CCSGG	1 cut(s)	464
BcoDI	GTCTC	2 cut(s)	148, 835
BcuI	ACTAGT	1 cut(s)	515
BfaI	CTAG	5 cut(s)	305, 516, 527, 950, 1104
BfoI	RGCGCY	1 cut(s)	463
BglI	GCCNNNNNGGC	1 cut(s)	1037
BglII	AGATCT	1 cut(s)	649
BisI	GCNGC	4 cut(s)	99, 739, 1135, 1138
BlnI	CCTAGG	1 cut(s)	1103
BlsI	GCNGC	4 cut(s)	100, 740, 1136, 1139
Bme1390I	CCNGG	4 cut(s)	107, 464, 576, 917
Bme18I	GGWCC	1 cut(s)	1066
BmgT120I	GGNCC	1 cut(s)	1066
BmrFI	CCNGG	4 cut(s)	107, 464, 576, 917
BmrI	ACTGGG	1 cut(s)	964
BmuI	ACTGGG	1 cut(s)	964
BpiI	GAAGAC	1 cut(s)	311
BpmI	CTGGAG	1 cut(s)	899
BpuEI	CTTGAG	1 cut(s)	727
BpuMI	CCSGG	1 cut(s)	464
BsaHI	GRCGYC	1 cut(s)	340
BsaJI	CCNNGG	5 cut(s)	482, 575, 756, 836, 1103
Bsc4I	CCNNNNNNNGG	2 cut(s)	129, 575
Bse118I	RCCGGY	1 cut(s)	774
Bse1I	ACTGG	1 cut(s)	970
Bse3DI	GCAATG	2 cut(s)	134, 492
BseBI	CCWGG	3 cut(s)	107, 576, 917
BseDI	CCNNGG	5 cut(s)	482, 575, 756, 836, 1103
BseGI	GGATG	2 cut(s)	102, 181
BseLI	CCNNNNNNNGG	2 cut(s)	129, 575
BseMI	GCAATG	2 cut(s)	134, 492
BseMII	CTCAG	1 cut(s)	305
BseNI	ACTGG	1 cut(s)	970
BseRI	GAGGAG	1 cut(s)	343
BseSI	GKGCMC	2 cut(s)	677, 949
BseXI	GCAGC	4 cut(s)	85, 725, 1121, 1124
BsgI	GTGCAG	1 cut(s)	612
Bsh1236I	CGCG	1 cut(s)	838
BshFI	GGCC	6 cut(s)	5, 393, 491, 803, 956, 1040
BsiHKAI	GWGCWC	2 cut(s)	303, 949
BsiSI	CCGG	2 cut(s)	464, 775
BslI	CCNNNNNNNGG	2 cut(s)	129, 575
BsmAI	GTCTC	2 cut(s)	148, 835
BsnI	GGCC	6 cut(s)	5, 393, 491, 803, 956, 1040
Bsp1286I	GDGCHC	3 cut(s)	303, 677, 949
Bsp143I	GATC	5 cut(s)	20, 229, 649, 796, 861
BspACI	CCGC	5 cut(s)	190, 475, 545, 836, 838
BspANI	GGCC	6 cut(s)	5, 393, 491, 803, 956, 1040
BspCNI	CTCAG	1 cut(s)	306
BspFNI	CGCG	1 cut(s)	838
BspPI	GGATC	1 cut(s)	28
BsrDI	GCAATG	2 cut(s)	134, 492
BsrFI	RCCGGY	1 cut(s)	774
BsrI	ACTGG	1 cut(s)	970
BssAI	RCCGGY	1 cut(s)	774
BssECI	CCNNGG	5 cut(s)	482, 575, 756, 836, 1103
BssMI	GATC	5 cut(s)	20, 229, 649, 796, 861
BssNI	GRCGYC	1 cut(s)	340
BssT1I	CCWWGG	3 cut(s)	482, 756, 1103
Bst2UI	CCWGG	3 cut(s)	107, 576, 917
Bst4CI	ACNGT	2 cut(s)	633, 944
Bst6I	CTCTTC	1 cut(s)	151
BstACI	GRCGYC	1 cut(s)	340
BstC8I	GCNNGC	2 cut(s)	479, 776
BstDEI	CTNAG	3 cut(s)	314, 456, 557
BstDSI	CCRYGG	1 cut(s)	836
BstF5I	GGATG	2 cut(s)	102, 181
BstFNI	CGCG	1 cut(s)	838
BstH2I	RGCGCY	1 cut(s)	463
BstHHI	GCGC	1 cut(s)	462
BstKTI	GATC	5 cut(s)	23, 232, 652, 799, 864
BstMAI	GTCTC	2 cut(s)	148, 835
BstMBI	GATC	5 cut(s)	20, 229, 649, 796, 861
BstMWI	GCNNNNNNNGC	2 cut(s)	953, 1037
BstNI	CCWGG	3 cut(s)	107, 576, 917
BstNSI	RCATGY	1 cut(s)	384
BstSCI	CCNGG	4 cut(s)	105, 462, 574, 915
BstSLI	GKGCMC	2 cut(s)	677, 949
BstUI	CGCG	1 cut(s)	838
BstV1I	GCAGC	4 cut(s)	85, 725, 1121, 1124
BstV2I	GAAGAC	1 cut(s)	311
BstX2I	RGATCY	1 cut(s)	649
BstYI	RGATCY	1 cut(s)	649
BsuRI	GGCC	6 cut(s)	5, 393, 491, 803, 956, 1040
BtgI	CCRYGG	1 cut(s)	836
BtsCI	GGATG	2 cut(s)	102, 181
Cac8I	GCNNGC	2 cut(s)	479, 776
CfoI	GCGC	1 cut(s)	462
Cfr10I	RCCGGY	1 cut(s)	774
Cfr13I	GGNCC	1 cut(s)	1066
Cfr42I	CCGCGG	1 cut(s)	839
CseI	GACGC	1 cut(s)	329
Csp6I	GTAC	1 cut(s)	688
CviAII	CATG	4 cut(s)	31, 325, 381, 1172
CviQI	GTAC	1 cut(s)	688
DdeI	CTNAG	3 cut(s)	314, 456, 557
DpnI	GATC	5 cut(s)	22, 231, 651, 798, 863
DpnII	GATC	5 cut(s)	20, 229, 649, 796, 861
DraI	TTTAAA	2 cut(s)	1206, 1245
EaeI	YGGCCR	2 cut(s)	3, 489
Eam1104I	CTCTTC	1 cut(s)	151
EarI	CTCTTC	1 cut(s)	151
Ecl136II	GAGCTC	1 cut(s)	301
Eco130I	CCWWGG	3 cut(s)	482, 756, 1103
Eco147I	AGGCCT	2 cut(s)	393, 803
Eco24I	GRGCYC	1 cut(s)	303
Eco32I	GATATC	1 cut(s)	409
Eco47I	GGWCC	1 cut(s)	1066
Eco53kI	GAGCTC	1 cut(s)	301
Eco57I	CTGAAG	1 cut(s)	604
EcoICRI	GAGCTC	1 cut(s)	301
EcoRI	GAATTC	1 cut(s)	1233
EcoRII	CCWGG	3 cut(s)	105, 574, 915
EcoRV	GATATC	1 cut(s)	409
EcoT14I	CCWWGG	3 cut(s)	482, 756, 1103
EcoT22I	ATGCAT	1 cut(s)	382
EcoT38I	GRGCYC	1 cut(s)	303
ErhI	CCWWGG	3 cut(s)	482, 756, 1103
FaeI	CATG	4 cut(s)	34, 328, 384, 1175
FalI	AAGNNNNNCTT	2 cut(s)	848, 880
FatI	CATG	4 cut(s)	30, 324, 380, 1171
FauI	CCCGC	2 cut(s)	552, 831
FbaI	TGATCA	1 cut(s)	796
Fnu4HI	GCNGC	4 cut(s)	99, 739, 1135, 1138
FokI	GGATG	2 cut(s)	89, 188
FriOI	GRGCYC	1 cut(s)	303
Fsp4HI	GCNGC	4 cut(s)	99, 739, 1135, 1138
FspBI	CTAG	5 cut(s)	305, 516, 527, 950, 1104
GlaI	GCGC	1 cut(s)	461
GluI	GCNGC	4 cut(s)	99, 739, 1135, 1138
GsuI	CTGGAG	1 cut(s)	899
HaeII	RGCGCY	1 cut(s)	463
HaeIII	GGCC	6 cut(s)	5, 393, 491, 803, 956, 1040
HapII	CCGG	2 cut(s)	464, 775
HgaI	GACGC	1 cut(s)	329
HhaI	GCGC	1 cut(s)	462
Hin1I	GRCGYC	1 cut(s)	340
Hin1II	CATG	4 cut(s)	34, 328, 384, 1175
Hin6I	GCGC	1 cut(s)	460
HinP1I	GCGC	1 cut(s)	460
HincII	GTYRAC	2 cut(s)	430, 885
HindII	GTYRAC	2 cut(s)	430, 885
HindIII	AAGCTT	1 cut(s)	1114
HinfI	GANTC	7 cut(s)	81, 316, 347, 530, 540, 815, 842
HpaII	CCGG	2 cut(s)	464, 775
HphI	GGTGA	3 cut(s)	15, 121, 825
Hpy166II	GTNNAC	3 cut(s)	430, 885, 947
Hpy188I	TCNGA	2 cut(s)	387, 623
Hpy188III	TCNNGA	7 cut(s)	227, 278, 344, 782, 812, 865, 1163
Hpy8I	GTNNAC	3 cut(s)	430, 885, 947
Hpy99I	CGWCG	1 cut(s)	345
HpyAV	CCTTC	9 cut(s)	50, 86, 95, 253, 628, 687, 814, 886, 1223
HpyCH4III	ACNGT	2 cut(s)	633, 944
HpyCH4IV	ACGT	2 cut(s)	549, 1017
HpyCH4V	TGCA	4 cut(s)	380, 503, 629, 947
HpyF10VI	GCNNNNNNNGC	2 cut(s)	953, 1037
HpyF3I	CTNAG	3 cut(s)	314, 456, 557
HpySE526I	ACGT	2 cut(s)	549, 1017
Hsp92I	GRCGYC	1 cut(s)	340
Hsp92II	CATG	4 cut(s)	34, 328, 384, 1175
HspAI	GCGC	1 cut(s)	460
KroI	GCCGGC	1 cut(s)	774
KroNI	GCCGGC	1 cut(s)	776
Ksp22I	TGATCA	1 cut(s)	796
KspI	CCGCGG	1 cut(s)	839
Kzo9I	GATC	5 cut(s)	20, 229, 649, 796, 861
LmnI	GCTCC	1 cut(s)	306
Lsp1109I	GCAGC	4 cut(s)	85, 725, 1121, 1124
MaeI	CTAG	5 cut(s)	305, 516, 527, 950, 1104
MaeII	ACGT	2 cut(s)	549, 1017
MaeIII	GTNAC	2 cut(s)	212, 451
MalI	GATC	5 cut(s)	22, 231, 651, 798, 863
MboI	GATC	5 cut(s)	20, 229, 649, 796, 861
MboII	GAAGA	5 cut(s)	138, 311, 342, 976, 1137
MfeI	CAATTG	1 cut(s)	1193
MflI	RGATCY	1 cut(s)	649
MhlI	GDGCHC	3 cut(s)	303, 677, 949
MlsI	TGGCCA	2 cut(s)	5, 491
MluNI	TGGCCA	2 cut(s)	5, 491
MlyI	GAGTC	3 cut(s)	75, 325, 539
MmeI	TCCRAC	2 cut(s)	384, 593
Mox20I	TGGCCA	2 cut(s)	5, 491
Mph1103I	ATGCAT	1 cut(s)	382
MroNI	GCCGGC	1 cut(s)	774
MroXI	GAANNNNTTC	1 cut(s)	1233
MscI	TGGCCA	2 cut(s)	5, 491
MseI	TTAA	5 cut(s)	512, 698, 765, 1205, 1244
MslI	CAYNNNNRTG	1 cut(s)	107
Msp20I	TGGCCA	2 cut(s)	5, 491
MspA1I	CMGCKG	1 cut(s)	838
MspI	CCGG	2 cut(s)	464, 775
MspR9I	CCNGG	4 cut(s)	107, 464, 576, 917
MunI	CAATTG	1 cut(s)	1193
MvaI	CCWGG	3 cut(s)	107, 576, 917
MvnI	CGCG	1 cut(s)	838
MwoI	GCNNNNNNNGC	2 cut(s)	953, 1037
NaeI	GCCGGC	1 cut(s)	776
NciI	CCSGG	1 cut(s)	464
NdeII	GATC	5 cut(s)	20, 229, 649, 796, 861
NgoMIV	GCCGGC	1 cut(s)	774
NlaIII	CATG	4 cut(s)	34, 328, 384, 1175
NmuCI	GTSAC	2 cut(s)	212, 451
NsiI	ATGCAT	1 cut(s)	382
NspI	RCATGY	1 cut(s)	384
PceI	AGGCCT	2 cut(s)	393, 803
PdiI	GCCGGC	1 cut(s)	776
PdmI	GAANNNNTTC	1 cut(s)	1233
PfeI	GAWTC	4 cut(s)	347, 540, 815, 842
PflMI	CCANNNNNTGG	2 cut(s)	129, 575
PfoI	TCCNGGA	1 cut(s)	915
PkrI	GCNGC	4 cut(s)	100, 740, 1136, 1139
PleI	GAGTC	3 cut(s)	75, 324, 538
PpsI	GAGTC	3 cut(s)	75, 324, 538
Psp124BI	GAGCTC	1 cut(s)	303
Psp1406I	AACGTT	1 cut(s)	1017
Psp6I	CCWGG	3 cut(s)	105, 574, 915
PspGI	CCWGG	3 cut(s)	105, 574, 915
PspPI	GGNCC	1 cut(s)	1066
PsuI	RGATCY	1 cut(s)	649
RsaI	GTAC	1 cut(s)	689
RsaNI	GTAC	1 cut(s)	688
RseI	CAYNNNNRTG	1 cut(s)	107
SacI	GAGCTC	1 cut(s)	303
SacII	CCGCGG	1 cut(s)	839
SaqAI	TTAA	5 cut(s)	512, 698, 765, 1205, 1244
SatI	GCNGC	4 cut(s)	99, 739, 1135, 1138
Sau3AI	GATC	5 cut(s)	20, 229, 649, 796, 861
Sau96I	GGNCC	1 cut(s)	1066
SchI	GAGTC	3 cut(s)	75, 325, 539
ScrFI	CCNGG	4 cut(s)	107, 464, 576, 917
SduI	GDGCHC	3 cut(s)	303, 677, 949
Sfr303I	CCGCGG	1 cut(s)	839
SgrBI	CCGCGG	1 cut(s)	839
SinI	GGWCC	1 cut(s)	1066
SmiI	ATTTAAAT	1 cut(s)	1245
SmiMI	CAYNNNNRTG	1 cut(s)	107
SmlI	CTYRAG	1 cut(s)	742
SmoI	CTYRAG	1 cut(s)	742
SpeI	ACTAGT	1 cut(s)	515
SseBI	AGGCCT	2 cut(s)	393, 803
SsiI	CCGC	5 cut(s)	190, 475, 545, 836, 838
SspMI	CTAG	5 cut(s)	305, 516, 527, 950, 1104
SstI	GAGCTC	1 cut(s)	303
StuI	AGGCCT	2 cut(s)	393, 803
StyD4I	CCNGG	4 cut(s)	105, 462, 574, 915
StyI	CCWWGG	3 cut(s)	482, 756, 1103
SwaI	ATTTAAAT	1 cut(s)	1245
TaaI	ACNGT	2 cut(s)	633, 944
TaiI	ACGT	2 cut(s)	552, 1020
TaqI	TCGA	7 cut(s)	79, 343, 553, 684, 710, 790, 987
TaqII	GACCGA	1 cut(s)	200
TfiI	GAWTC	4 cut(s)	347, 540, 815, 842
Tru1I	TTAA	5 cut(s)	512, 698, 765, 1205, 1244
Tru9I	TTAA	5 cut(s)	512, 698, 765, 1205, 1244
TseFI	GTSAC	2 cut(s)	212, 451
TseI	GCWGC	4 cut(s)	98, 738, 1134, 1137
Tsp45I	GTSAC	2 cut(s)	212, 451
TspDTI	ATGAA	3 cut(s)	138, 235, 1160
TspGWI	ACGGA	1 cut(s)	588
Van91I	CCANNNNNTGG	2 cut(s)	129, 575
VneI	GTGCAC	1 cut(s)	945
VpaK11BI	GGWCC	1 cut(s)	1066
XapI	RAATTY	7 cut(s)	163, 590, 920, 1200, 1207, 1233, 1246
XceI	RCATGY	1 cut(s)	384
XcmI	CCANNNNNNNNNTGG	1 cut(s)	13
XmaJI	CCTAGG	1 cut(s)	1103
XmnI	GAANNNNTTC	1 cut(s)	1233
XspI	CTAG	5 cut(s)	305, 516, 527, 950, 1104
Zsp2I	ATGCAT	1 cut(s)	382

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.