Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0041664.1

Orthogroup ID

OG0004540

Physical Location & Seq

Genomic Coordinates Reverse (-)

134 .. 922

Gene Structure 789 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0041664.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 789 bp

atgtccttcacagctgtgacgttccatggccatagtttcttccctgtactatggaagtcctcttccatcgagtacttgtcattaactgcatgttcttttgagaatcatgaccctacgtgttacattgaaggttcgagtctcaagtgcttggaagttaagcattgtcatggtcttctgtgtattattgctaacaaagctttcaatctcgaatctcttacatttgtttcaccaaaatgtataagggtgtcaatgtataatacccccaacttgagaaagatcgatatttgtgttgatgaactcggggaattatatttatggccatgccatcgtgcactaaaggccaccatcaatacccaaaatctcaatctattcagcttctatggttcattggaagcccaagtttttgttaaagcatgttggaaatccataatttcagtttcggaactttgggatgaagaatggttctgttcaaactcgacaaatttgtctactctgatggacttccttaaaggatttggctgcagcaagaaggtgtggctgtgtactcgtgattttaaagctctcatctttccagaaacttttaggaagaccaccggcaccctcgctacaccgttgcctaaaagttgcattctgaatgtggcaatgctgaatcctccaacagcgcgcagtagagactactgggaattgaaggactccatgaattggatagcgcattctgcacggattgttagagataatccccgatggctcgtcaagtacttggaaaaaggcggaaagcaagcaaactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

262

Amino Acids

29.95

Weight (kDa)

8.64

Isoelectric Point (pI)

39.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004540)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g33180 FvH4_4g33210 FvH4_4g33310 FvH4_4g33501
rosa_chinensis	RchiOBHm_Chr4g0442321 RchiOBHm_Chr4g0442821 RchiOBHm_Chr4g0442851 RchiOBHm_Chr4g0442941
rosa_multiflora	Rmu_co8426117.1_g000001 Rmu_sc0000124.1_g000038 Rmu_sc0000124.1_g000050 Rmu_sc0000124.1_g000054 Rmu_sc0007295.1_g000003 Rmu_sc0041664.1_g000001 Rmu_ssc0000204.1_g000015 Rmu_ssc0000204.1_g000016 Rmu_ssc0000204.1_g000050 Rmu_ssc0000204.1_g000053 Rmu_ssc0000204.1_g000057
rosa_roxburghii	Rroxscaffold_5G00383340 Rroxscaffold_5G00383620
rosa_rugosa	Rorug04G0343600
rosa_samantha	Rh4AG392000 Rh4AG393000 Rh4AG393300 Rh4AG396000 Rh4AG397300 Rh4BG406500
rosa_wichuraiana	Rw4G033860 Rw4G033950 Rw4G033970 Rw4G033980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	484
AccB1I	GGYRCC	1 cut(s)	596
AccB7I	CCANNNNNTGG	1 cut(s)	702
AccI	GTMKAC	1 cut(s)	488
AccII	CGCG	1 cut(s)	664
AciI	CCGC	1 cut(s)	771
AcoI	YGGCCR	2 cut(s)	28, 317
AcsI	RAATTY	1 cut(s)	481
AfaI	GTAC	4 cut(s)	48, 74, 544, 758
AfiI	CCNNNNNNNGG	1 cut(s)	702
AflIII	ACRYGT	1 cut(s)	116
AgsI	TTSAA	4 cut(s)	128, 202, 471, 688
AleI	CACNNNNGTG	1 cut(s)	14
AluBI	AGCT	4 cut(s)	14, 197, 375, 560
AluI	AGCT	4 cut(s)	14, 197, 375, 560
Alw21I	GWGCWC	1 cut(s)	334
Alw26I	GTCTC	2 cut(s)	143, 666
Alw44I	GTGCAC	1 cut(s)	330
Ama87I	CYCGRG	1 cut(s)	299
AoxI	GGCC	3 cut(s)	28, 317, 339
ApaLI	GTGCAC	1 cut(s)	330
ApeKI	GCWGC	2 cut(s)	519, 522
ApoI	RAATTY	1 cut(s)	481
AspLEI	GCGC	3 cut(s)	664, 666, 712
AsuHPI	GGTGA	1 cut(s)	219
AvaI	CYCGRG	1 cut(s)	299
BaeGI	GKGCMC	1 cut(s)	334
BalI	TGGCCA	2 cut(s)	30, 319
BanI	GGYRCC	1 cut(s)	596
BauI	CACGAG	1 cut(s)	546
BbsI	GAAGAC	2 cut(s)	164, 593
Bbv12I	GWGCWC	1 cut(s)	334
BbvI	GCAGC	2 cut(s)	506, 534
BccI	CCATC	5 cut(s)	74, 333, 353, 490, 738
BcoDI	GTCTC	2 cut(s)	143, 666
BfaI	CTAG	1 cut(s)	787
BfmI	CTRYAG	1 cut(s)	520
BisI	GCNGC	2 cut(s)	520, 523
BlsI	GCNGC	2 cut(s)	521, 524
BmcAI	AGTACT	2 cut(s)	74, 758
BmeT110I	CYCGRG	1 cut(s)	299
BmiI	GGNNCC	1 cut(s)	598
BmrI	ACTGGG	1 cut(s)	688
BmuI	ACTGGG	1 cut(s)	688
BpiI	GAAGAC	2 cut(s)	164, 593
BpuEI	CTTGAG	2 cut(s)	125, 289
Bsa29I	ATCGAT	1 cut(s)	279
BsaAI	YACGTR	1 cut(s)	117
BsaJI	CCNNGG	1 cut(s)	25
Bsc4I	CCNNNNNNNGG	1 cut(s)	702
Bse118I	RCCGGY	1 cut(s)	593
Bse1I	ACTGG	1 cut(s)	683
Bse3DI	GCAATG	1 cut(s)	648
BseCI	ATCGAT	1 cut(s)	279
BseDI	CCNNGG	1 cut(s)	25
BseGI	GGATG	1 cut(s)	457
BseLI	CCNNNNNNNGG	1 cut(s)	702
BseMI	GCAATG	1 cut(s)	648
BseNI	ACTGG	1 cut(s)	683
BsePI	GCGCGC	1 cut(s)	662
BseSI	GKGCMC	1 cut(s)	334
BseXI	GCAGC	2 cut(s)	506, 534
BsgI	GTGCAG	1 cut(s)	702
Bsh1236I	CGCG	1 cut(s)	664
BshFI	GGCC	3 cut(s)	30, 319, 341
BshNI	GGYRCC	1 cut(s)	596
BshVI	ATCGAT	1 cut(s)	279
BsiHKAI	GWGCWC	1 cut(s)	334
BsiHKCI	CYCGRG	1 cut(s)	299
BsiSI	CCGG	1 cut(s)	594
BslI	CCNNNNNNNGG	1 cut(s)	702
BsmAI	GTCTC	2 cut(s)	143, 666
BsmI	GAATGC	2 cut(s)	627, 712
BsnI	GGCC	3 cut(s)	30, 319, 341
BsoBI	CYCGRG	1 cut(s)	299
Bsp1286I	GDGCHC	1 cut(s)	334
Bsp143I	GATC	1 cut(s)	276
Bsp19I	CCATGG	1 cut(s)	25
BspACI	CCGC	1 cut(s)	771
BspANI	GGCC	3 cut(s)	30, 319, 341
BspDI	ATCGAT	1 cut(s)	279
BspFNI	CGCG	1 cut(s)	664
BspHI	TCATGA	1 cut(s)	106
BspLI	GGNNCC	1 cut(s)	598
BspMAI	CTGCAG	1 cut(s)	524
BspT107I	GGYRCC	1 cut(s)	596
BsrDI	GCAATG	1 cut(s)	648
BsrFI	RCCGGY	1 cut(s)	593
BsrI	ACTGG	1 cut(s)	683
BssAI	RCCGGY	1 cut(s)	593
BssECI	CCNNGG	1 cut(s)	25
BssHII	GCGCGC	1 cut(s)	662
BssMI	GATC	1 cut(s)	276
BssSI	CACGAG	1 cut(s)	546
BssT1I	CCWWGG	1 cut(s)	25
Bst2BI	CACGAG	1 cut(s)	546
Bst4CI	ACNGT	1 cut(s)	612
Bst6I	CTCTTC	1 cut(s)	67
BstBAI	YACGTR	1 cut(s)	117
BstC8I	GCNNGC	2 cut(s)	664, 780
BstDSI	CCRYGG	1 cut(s)	25
BstF5I	GGATG	1 cut(s)	457
BstFNI	CGCG	1 cut(s)	664
BstHHI	GCGC	3 cut(s)	664, 666, 712
BstKTI	GATC	1 cut(s)	279
BstMAI	GTCTC	2 cut(s)	143, 666
BstMBI	GATC	1 cut(s)	276
BstMWI	GCNNNNNNNGC	3 cut(s)	194, 338, 716
BstNSI	RCATGY	2 cut(s)	93, 417
BstSFI	CTRYAG	1 cut(s)	520
BstSLI	GKGCMC	1 cut(s)	334
BstUI	CGCG	1 cut(s)	664
BstV1I	GCAGC	2 cut(s)	506, 534
BstV2I	GAAGAC	2 cut(s)	164, 593
Bsu15I	ATCGAT	1 cut(s)	279
BsuRI	GGCC	3 cut(s)	30, 319, 341
BsuTUI	ATCGAT	1 cut(s)	279
BtgI	CCRYGG	1 cut(s)	25
BtsCI	GGATG	1 cut(s)	457
Cac8I	GCNNGC	2 cut(s)	664, 780
CciI	TCATGA	1 cut(s)	106
CfoI	GCGC	3 cut(s)	664, 666, 712
Cfr10I	RCCGGY	1 cut(s)	593
ClaI	ATCGAT	1 cut(s)	279
Csp6I	GTAC	4 cut(s)	47, 73, 543, 757
CviAII	CATG	7 cut(s)	26, 90, 107, 167, 321, 414, 697
CviQI	GTAC	4 cut(s)	47, 73, 543, 757
DpnI	GATC	1 cut(s)	278
DpnII	GATC	1 cut(s)	276
DraI	TTTAAA	1 cut(s)	556
DrdI	GACNNNNNNGTC	1 cut(s)	484
DseDI	GACNNNNNNGTC	1 cut(s)	484
EaeI	YGGCCR	2 cut(s)	28, 317
Eam1104I	CTCTTC	1 cut(s)	67
EarI	CTCTTC	1 cut(s)	67
EciI	GGCGGA	1 cut(s)	786
Eco130I	CCWWGG	1 cut(s)	25
Eco88I	CYCGRG	1 cut(s)	299
EcoT14I	CCWWGG	1 cut(s)	25
ErhI	CCWWGG	1 cut(s)	25
FaeI	CATG	7 cut(s)	29, 93, 110, 170, 324, 417, 700
FatI	CATG	7 cut(s)	25, 89, 106, 166, 320, 413, 696
FblI	GTMKAC	1 cut(s)	488
Fnu4HI	GCNGC	2 cut(s)	520, 523
FokI	GGATG	1 cut(s)	464
Fsp4HI	GCNGC	2 cut(s)	520, 523
FspBI	CTAG	1 cut(s)	787
GlaI	GCGC	3 cut(s)	663, 665, 711
GluI	GCNGC	2 cut(s)	520, 523
HaeIII	GGCC	3 cut(s)	30, 319, 341
HapII	CCGG	1 cut(s)	594
HhaI	GCGC	3 cut(s)	664, 666, 712
Hin1II	CATG	7 cut(s)	29, 93, 110, 170, 324, 417, 700
Hin6I	GCGC	3 cut(s)	662, 664, 710
HinP1I	GCGC	3 cut(s)	662, 664, 710
HindIII	AAGCTT	1 cut(s)	195
HinfI	GANTC	5 cut(s)	103, 136, 209, 649, 692
HpaII	CCGG	1 cut(s)	594
HphI	GGTGA	1 cut(s)	219
Hpy166II	GTNNAC	3 cut(s)	332, 489, 543
Hpy188I	TCNGA	3 cut(s)	442, 495, 633
Hpy188III	TCNNGA	4 cut(s)	107, 206, 548, 572
Hpy8I	GTNNAC	3 cut(s)	332, 489, 543
HpyAV	CCTTC	4 cut(s)	16, 122, 523, 682
HpyCH4III	ACNGT	1 cut(s)	612
HpyCH4IV	ACGT	2 cut(s)	20, 116
HpyCH4V	TGCA	5 cut(s)	89, 332, 522, 627, 719
HpyF10VI	GCNNNNNNNGC	3 cut(s)	194, 338, 716
HpySE526I	ACGT	2 cut(s)	20, 116
Hsp92II	CATG	7 cut(s)	29, 93, 110, 170, 324, 417, 700
HspAI	GCGC	3 cut(s)	662, 664, 710
Kzo9I	GATC	1 cut(s)	276
LpnPI	CCDG	4 cut(s)	57, 585, 607, 664
Lsp1109I	GCAGC	2 cut(s)	506, 534
MaeI	CTAG	1 cut(s)	787
MaeII	ACGT	2 cut(s)	20, 116
MaeIII	GTNAC	2 cut(s)	16, 119
MalI	GATC	1 cut(s)	278
MboI	GATC	1 cut(s)	276
MboII	GAAGA	5 cut(s)	31, 54, 164, 467, 598
MhlI	GDGCHC	1 cut(s)	334
MlsI	TGGCCA	2 cut(s)	30, 319
MluCI	AATT	5 cut(s)	305, 429, 481, 683, 700
MluNI	TGGCCA	2 cut(s)	30, 319
MlyI	GAGTC	2 cut(s)	145, 686
MmeI	TCCRAC	2 cut(s)	398, 680
MnlI	CCTC	3 cut(s)	70, 611, 663
Mox20I	TGGCCA	2 cut(s)	30, 319
MscI	TGGCCA	2 cut(s)	30, 319
MseI	TTAA	5 cut(s)	83, 156, 408, 507, 555
MslI	CAYNNNNRTG	3 cut(s)	14, 165, 232
Msp20I	TGGCCA	2 cut(s)	30, 319
MspA1I	CMGCKG	1 cut(s)	14
MspI	CCGG	1 cut(s)	594
Mva1269I	GAATGC	2 cut(s)	627, 712
MvnI	CGCG	1 cut(s)	664
MwoI	GCNNNNNNNGC	3 cut(s)	194, 338, 716
NcoI	CCATGG	1 cut(s)	25
NdeII	GATC	1 cut(s)	276
NlaIII	CATG	7 cut(s)	29, 93, 110, 170, 324, 417, 700
NlaIV	GGNNCC	1 cut(s)	598
NmuCI	GTSAC	1 cut(s)	16
NspI	RCATGY	2 cut(s)	93, 417
OliI	CACNNNNGTG	1 cut(s)	14
PagI	TCATGA	1 cut(s)	106
PauI	GCGCGC	1 cut(s)	662
PctI	GAATGC	2 cut(s)	627, 712
PfeI	GAWTC	3 cut(s)	103, 209, 649
PflMI	CCANNNNNTGG	1 cut(s)	702
PkrI	GCNGC	2 cut(s)	521, 524
PleI	GAGTC	2 cut(s)	144, 686
PpsI	GAGTC	2 cut(s)	144, 686
Ppu21I	YACGTR	1 cut(s)	117
PspN4I	GGNNCC	1 cut(s)	598
PstI	CTGCAG	1 cut(s)	524
PteI	GCGCGC	1 cut(s)	662
PvuII	CAGCTG	1 cut(s)	14
RsaI	GTAC	4 cut(s)	48, 74, 544, 758
RsaNI	GTAC	4 cut(s)	47, 73, 543, 757
RseI	CAYNNNNRTG	3 cut(s)	14, 165, 232
SaqAI	TTAA	5 cut(s)	83, 156, 408, 507, 555
SatI	GCNGC	2 cut(s)	520, 523
Sau3AI	GATC	1 cut(s)	276
ScaI	AGTACT	2 cut(s)	74, 758
SchI	GAGTC	2 cut(s)	145, 686
SduI	GDGCHC	1 cut(s)	334
SetI	ASST	8 cut(s)	16, 23, 119, 133, 199, 377, 534, 562
SfcI	CTRYAG	1 cut(s)	520
SmiMI	CAYNNNNRTG	3 cut(s)	14, 165, 232
SmlI	CTYRAG	2 cut(s)	140, 268
SmoI	CTYRAG	2 cut(s)	140, 268
Sse9I	AATT	5 cut(s)	305, 429, 481, 683, 700
SsiI	CCGC	1 cut(s)	771
SspMI	CTAG	1 cut(s)	787
StyI	CCWWGG	1 cut(s)	25
TaaI	ACNGT	1 cut(s)	612
TaiI	ACGT	2 cut(s)	23, 119
TaqI	TCGA	5 cut(s)	69, 134, 207, 279, 476
TasI	AATT	5 cut(s)	305, 429, 481, 683, 700
TatI	WGTACW	4 cut(s)	46, 72, 542, 756
TfiI	GAWTC	3 cut(s)	103, 209, 649
Tru1I	TTAA	5 cut(s)	83, 156, 408, 507, 555
Tru9I	TTAA	5 cut(s)	83, 156, 408, 507, 555
TseFI	GTSAC	1 cut(s)	16
TseI	GCWGC	2 cut(s)	519, 522
Tsp45I	GTSAC	1 cut(s)	16
TspDTI	ATGAA	4 cut(s)	309, 375, 468, 713
TspGWI	ACGGA	1 cut(s)	736
Van91I	CCANNNNNTGG	1 cut(s)	702
VneI	GTGCAC	1 cut(s)	330
XapI	RAATTY	1 cut(s)	481
XceI	RCATGY	2 cut(s)	93, 417
XmiI	GTMKAC	1 cut(s)	488
XspI	CTAG	1 cut(s)	787
ZrmI	AGTACT	2 cut(s)	74, 758

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.