Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0004540

Physical Location & Seq

Genomic Coordinates Forward (+)

69836927 .. 69838820

Gene Structure 1894 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG392000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1446 bp

ATGTCGACCATAACCAAAACGCTAATGGCCATCAGCACATTGGGATCACCTCACATGGCTGACCTTCACAACTTACCTGACCTTGTTATTGACAAAATCCTTCGACTCCTTCCCACTAAAGCTGCCATCCAGGTGAGCTTTCTTTCCAAGCAATGGCAAGCTGCAGTCTCTTCATTACCTGAACTAAATTTTAACGAGGATGATGATTTTGACCGCCACAACCTTAATCGTTTCGGTCACTACCAACATCAAGATCAACACAAGAGGTTCATCAACTTTTTGGAGGGGTATTTAGATTATCGTGAGAAATACGACCGTAAAGAGCTCCTAGATAAACTAAGTCTTCACATGAGGATGTATGGGCTTGGAGATTATTCTACCATAACTAAGTGGTTGAAATATGCATGTGAGAGAGGCCTCAAAGAGTTGGATATCAGTCCTAAAATGAATCCAAAACAATATGGGATTGTCAGTGAGCACGCCGTGGAAAGTTATTTTGACTACAACCGCTTCTACCGCATGCCTTGGGTGGCCATTAATGCTAGTGCAAAATCTTTAACTAGTCTAAAACTAGCGTACGTGAGAATCCCGGACGTTCGAGCAAGAGGTTTTTCAACTCCTGGGCGATTTTTTCCGTCTTTGAAAATTCTGTCCTTCAAAACTGCACGGTTTTTTACTGACCAAGAACTCTATTCTGTTTTATTTGAGTGCCCTTCCATTGAGTACCTGTCATTAACTGATTGTTCGATTGGAAACTCCAAGTGTTATGTTTGCTGCTCAAGTCTCAAGTCCTTGGAAGTCAAGTATTGCCAGCTTGATGATATTCGAGTTGTTCATGCCTTCAATCTTGAATCTTTTACATTTGTCTCACTGCCGGATTCAAAATGTGAAAAGATGATCTTGAATAATTCCTTCAACTTGAAATATATAAACATTTGTGTTGATTACCTCGGGGAATTTTCTTTATTGGGAAGCCATCGTGCACTAGAGGCCAAAATCATTAACCAATATGTCGAATTCTTCGAGTTCTTTGATGGTTATTTGAGTGCCAATGTTTCTGTTAAAGCCTATGAGGCCACAATTTTAGTTGGGGAACTTTTCGATCCAGAATGGTTCTCGTCATATTCGACACATTTTCCTAGTCTGATGAGCTTTTTTGGAAGATTTAGCTGCTGCTTTAAAATAAACCTCTACAATCAAGATGTCCATGCACTCATTGTTCCTAAGAATTACAGAAAGACCTCCTTTGAACTATTGCCTAATACTTCCAATTTGCAGGCGTGGATGCCGAATCCACCAATAGTGGGAAGTAGAGAGTATTTGGAATTGAAGGACTCCTTGCAATGGATTGCACCTTTTGCACAAATACTGATCATGCCGGTGGACGTTGAAGAAGACAGAAAGAAAGTAGGCCAGCGAGGTAGTCCTGCAGCTATAGATGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box

Protein Analysis

481

Amino Acids

55.61

Weight (kDa)

6.48

Isoelectric Point (pI)

36.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	22 - 60	1.7e-06	F-box domain
LRR_At5g56370	PF24758	180 - 295	5e-10	FBD-associated F-box protein At5g56370, LRR repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004540)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g33180 FvH4_4g33210 FvH4_4g33310 FvH4_4g33501
rosa_chinensis	RchiOBHm_Chr4g0442321 RchiOBHm_Chr4g0442821 RchiOBHm_Chr4g0442851 RchiOBHm_Chr4g0442941
rosa_multiflora	Rmu_co8426117.1_g000001 Rmu_sc0000124.1_g000038 Rmu_sc0000124.1_g000050 Rmu_sc0000124.1_g000054 Rmu_sc0007295.1_g000003 Rmu_sc0041664.1_g000001 Rmu_ssc0000204.1_g000015 Rmu_ssc0000204.1_g000016 Rmu_ssc0000204.1_g000050 Rmu_ssc0000204.1_g000053 Rmu_ssc0000204.1_g000057
rosa_roxburghii	Rroxscaffold_5G00383340 Rroxscaffold_5G00383620
rosa_rugosa	Rorug04G0343600
rosa_samantha	Rh4AG392000 Rh4AG393000 Rh4AG393300 Rh4AG396000 Rh4AG397300 Rh4BG406500
rosa_wichuraiana	Rw4G033860 Rw4G033950 Rw4G033970 Rw4G033980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	153
AccI	GTMKAC	1 cut(s)	5
AciI	CCGC	3 cut(s)	214, 508, 517
AclWI	GGATC	2 cut(s)	52, 1097
AcoI	YGGCCR	2 cut(s)	27, 531
AcsI	RAATTY	4 cut(s)	187, 645, 956, 1016
AdeI	CACNNNGTG	1 cut(s)	484
AfaI	GTAC	2 cut(s)	578, 725
AfiI	CCNNNNNNNGG	3 cut(s)	153, 1304, 1344
AhlI	ACTAGT	1 cut(s)	560
AjnI	CCWGG	2 cut(s)	129, 619
AluBI	AGCT	8 cut(s)	122, 138, 161, 325, 814, 1152, 1170, 1433
AluI	AGCT	8 cut(s)	122, 138, 161, 325, 814, 1152, 1170, 1433
Alw21I	GWGCWC	3 cut(s)	327, 480, 985
Alw26I	GTCTC	3 cut(s)	172, 788, 871
Alw44I	GTGCAC	1 cut(s)	981
AlwI	GGATC	2 cut(s)	52, 1097
Ama87I	CYCGRG	1 cut(s)	950
AoxI	GGCC	6 cut(s)	27, 415, 531, 990, 1074, 1411
ApaLI	GTGCAC	1 cut(s)	981
ApeKI	GCWGC	6 cut(s)	122, 161, 774, 1170, 1173, 1430
ApoI	RAATTY	4 cut(s)	187, 645, 956, 1016
AseI	ATTAAT	1 cut(s)	537
AsuC2I	CCSGG	1 cut(s)	590
AsuHPI	GGTGA	2 cut(s)	39, 145
AvaI	CYCGRG	1 cut(s)	950
BaeGI	GKGCMC	2 cut(s)	713, 985
BalI	TGGCCA	2 cut(s)	29, 533
BanII	GRGCYC	1 cut(s)	327
BbsI	GAAGAC	2 cut(s)	335, 1401
Bbv12I	GWGCWC	3 cut(s)	327, 480, 985
BbvI	GCAGC	6 cut(s)	109, 148, 761, 1157, 1160, 1442
BccI	CCATC	4 cut(s)	38, 134, 984, 1028
BceAI	ACGGC	1 cut(s)	467
BciT130I	CCWGG	2 cut(s)	131, 621
BclI	TGATCA	1 cut(s)	1371
BcnI	CCSGG	1 cut(s)	590
BcoDI	GTCTC	3 cut(s)	172, 788, 871
BcuI	ACTAGT	1 cut(s)	560
BfaI	CTAG	6 cut(s)	329, 543, 561, 572, 986, 1140
BfmI	CTRYAG	3 cut(s)	162, 1428, 1434
BglI	GCCNNNNNGGC	1 cut(s)	1073
BisI	GCNGC	6 cut(s)	123, 162, 775, 1171, 1174, 1431
BlsI	GCNGC	6 cut(s)	124, 163, 776, 1172, 1175, 1432
Bme1390I	CCNGG	3 cut(s)	131, 590, 621
BmeT110I	CYCGRG	1 cut(s)	950
BmrFI	CCNGG	3 cut(s)	131, 590, 621
BmsI	GCATC	1 cut(s)	1275
BpiI	GAAGAC	2 cut(s)	335, 1401
BpuEI	CTTGAG	2 cut(s)	763, 770
BpuMI	CCSGG	1 cut(s)	590
BsaAI	YACGTR	1 cut(s)	580
BsaJI	CCNNGG	5 cut(s)	483, 524, 620, 792, 949
Bsc4I	CCNNNNNNNGG	3 cut(s)	153, 1304, 1344
Bse118I	RCCGGY	1 cut(s)	1378
Bse3DI	GCAATG	2 cut(s)	158, 1349
BseBI	CCWGG	2 cut(s)	131, 621
BseDI	CCNNGG	5 cut(s)	483, 524, 620, 792, 949
BseGI	GGATG	4 cut(s)	126, 205, 360, 1290
BseLI	CCNNNNNNNGG	3 cut(s)	153, 1304, 1344
BseMI	GCAATG	2 cut(s)	158, 1349
BseSI	GKGCMC	2 cut(s)	713, 985
BseXI	GCAGC	6 cut(s)	109, 148, 761, 1157, 1160, 1442
BsgI	GTGCAG	1 cut(s)	648
Bsh1285I	CGRYCG	1 cut(s)	316
BshFI	GGCC	6 cut(s)	29, 417, 533, 992, 1076, 1413
BsiEI	CGRYCG	1 cut(s)	316
BsiHKAI	GWGCWC	3 cut(s)	327, 480, 985
BsiHKCI	CYCGRG	1 cut(s)	950
BsiSI	CCGG	3 cut(s)	590, 875, 1379
BsiWI	CGTACG	1 cut(s)	576
BslI	CCNNNNNNNGG	3 cut(s)	153, 1304, 1344
BsmAI	GTCTC	3 cut(s)	172, 788, 871
BsnI	GGCC	6 cut(s)	29, 417, 533, 992, 1076, 1413
BsoBI	CYCGRG	1 cut(s)	950
Bsp1286I	GDGCHC	4 cut(s)	327, 480, 713, 985
Bsp143I	GATC	5 cut(s)	44, 253, 897, 1102, 1371
BspACI	CCGC	3 cut(s)	214, 508, 517
BspANI	GGCC	6 cut(s)	29, 417, 533, 992, 1076, 1413
BspMAI	CTGCAG	2 cut(s)	166, 1432
BspPI	GGATC	2 cut(s)	52, 1097
BsrDI	GCAATG	2 cut(s)	158, 1349
BsrFI	RCCGGY	1 cut(s)	1378
BssAI	RCCGGY	1 cut(s)	1378
BssECI	CCNNGG	5 cut(s)	483, 524, 620, 792, 949
BssMI	GATC	5 cut(s)	44, 253, 897, 1102, 1371
BssT1I	CCWWGG	2 cut(s)	524, 792
Bst2UI	CCWGG	2 cut(s)	131, 621
Bst4CI	ACNGT	2 cut(s)	317, 669
Bst6I	CTCTTC	1 cut(s)	175
BstAPI	GCANNNNNTGC	1 cut(s)	1358
BstBAI	YACGTR	1 cut(s)	580
BstC8I	GCNNGC	6 cut(s)	159, 480, 521, 812, 1278, 1415
BstDEI	CTNAG	3 cut(s)	338, 387, 1224
BstDSI	CCRYGG	1 cut(s)	483
BstF5I	GGATG	4 cut(s)	126, 205, 360, 1290
BstKTI	GATC	5 cut(s)	47, 256, 900, 1105, 1374
BstMAI	GTCTC	3 cut(s)	172, 788, 871
BstMBI	GATC	5 cut(s)	44, 253, 897, 1102, 1371
BstMCI	CGRYCG	1 cut(s)	316
BstMWI	GCNNNNNNNGC	5 cut(s)	516, 539, 989, 1073, 1358
BstNI	CCWGG	2 cut(s)	131, 621
BstNSI	RCATGY	2 cut(s)	408, 523
BstSCI	CCNGG	3 cut(s)	129, 588, 619
BstSFI	CTRYAG	3 cut(s)	162, 1428, 1434
BstSLI	GKGCMC	2 cut(s)	713, 985
BstV1I	GCAGC	6 cut(s)	109, 148, 761, 1157, 1160, 1442
BstV2I	GAAGAC	2 cut(s)	335, 1401
BsuRI	GGCC	6 cut(s)	29, 417, 533, 992, 1076, 1413
BtgI	CCRYGG	1 cut(s)	483
BtsCI	GGATG	4 cut(s)	126, 205, 360, 1290
BtsI	GCAGTG	1 cut(s)	869
BtsIMutI	CAGTG	2 cut(s)	478, 869
Cac8I	GCNNGC	6 cut(s)	159, 480, 521, 812, 1278, 1415
Cfr10I	RCCGGY	1 cut(s)	1378
Csp6I	GTAC	2 cut(s)	577, 724
CviAII	CATG	7 cut(s)	55, 349, 405, 520, 836, 1208, 1375
CviQI	GTAC	2 cut(s)	577, 724
DdeI	CTNAG	3 cut(s)	338, 387, 1224
DpnI	GATC	5 cut(s)	46, 255, 899, 1104, 1373
DpnII	GATC	5 cut(s)	44, 253, 897, 1102, 1371
DraI	TTTAAA	1 cut(s)	1180
DraIII	CACNNNGTG	1 cut(s)	484
EaeI	YGGCCR	2 cut(s)	27, 531
Eam1104I	CTCTTC	1 cut(s)	175
EarI	CTCTTC	1 cut(s)	175
Ecl136II	GAGCTC	1 cut(s)	325
Eco130I	CCWWGG	2 cut(s)	524, 792
Eco147I	AGGCCT	1 cut(s)	417
Eco24I	GRGCYC	1 cut(s)	327
Eco32I	GATATC	1 cut(s)	433
Eco53kI	GAGCTC	1 cut(s)	325
Eco88I	CYCGRG	1 cut(s)	950
EcoICRI	GAGCTC	1 cut(s)	325
EcoRI	GAATTC	1 cut(s)	1016
EcoRII	CCWGG	2 cut(s)	129, 619
EcoRV	GATATC	1 cut(s)	433
EcoT14I	CCWWGG	2 cut(s)	524, 792
EcoT22I	ATGCAT	1 cut(s)	406
EcoT38I	GRGCYC	1 cut(s)	327
ErhI	CCWWGG	2 cut(s)	524, 792
FaeI	CATG	7 cut(s)	58, 352, 408, 523, 839, 1211, 1378
FalI	AAGNNNNNCTT	6 cut(s)	884, 916, 1229, 1261, 1322, 1354
FatI	CATG	7 cut(s)	54, 348, 404, 519, 835, 1207, 1374
FbaI	TGATCA	1 cut(s)	1371
FblI	GTMKAC	1 cut(s)	5
Fnu4HI	GCNGC	6 cut(s)	123, 162, 775, 1171, 1174, 1431
FokI	GGATG	4 cut(s)	113, 212, 367, 1297
FriOI	GRGCYC	1 cut(s)	327
Fsp4HI	GCNGC	6 cut(s)	123, 162, 775, 1171, 1174, 1431
FspBI	CTAG	6 cut(s)	329, 543, 561, 572, 986, 1140
GluI	GCNGC	6 cut(s)	123, 162, 775, 1171, 1174, 1431
HaeIII	GGCC	6 cut(s)	29, 417, 533, 992, 1076, 1413
HapII	CCGG	3 cut(s)	590, 875, 1379
Hin1II	CATG	7 cut(s)	58, 352, 408, 523, 839, 1211, 1378
HincII	GTYRAC	1 cut(s)	6
HindII	GTYRAC	1 cut(s)	6
HinfI	GANTC	7 cut(s)	105, 448, 585, 851, 878, 1291, 1334
HpaII	CCGG	3 cut(s)	590, 875, 1379
HphI	GGTGA	2 cut(s)	39, 145
Hpy166II	GTNNAC	3 cut(s)	6, 983, 1384
Hpy188I	TCNGA	1 cut(s)	1146
Hpy188III	TCNNGA	6 cut(s)	251, 302, 848, 901, 1106, 1199
Hpy8I	GTNNAC	3 cut(s)	6, 983, 1384
HpyAV	CCTTC	8 cut(s)	74, 110, 119, 664, 723, 850, 922, 1324
HpyCH4III	ACNGT	2 cut(s)	317, 669
HpyCH4IV	ACGT	3 cut(s)	579, 594, 1386
HpyF10VI	GCNNNNNNNGC	5 cut(s)	516, 539, 989, 1073, 1358
HpyF3I	CTNAG	3 cut(s)	338, 387, 1224
HpySE526I	ACGT	3 cut(s)	579, 594, 1386
Hsp92II	CATG	7 cut(s)	58, 352, 408, 523, 839, 1211, 1378
Ksp22I	TGATCA	1 cut(s)	1371
Kzo9I	GATC	5 cut(s)	44, 253, 897, 1102, 1371
LmnI	GCTCC	1 cut(s)	330
Lsp1109I	GCAGC	6 cut(s)	109, 148, 761, 1157, 1160, 1442
LweI	GCATC	1 cut(s)	1275
MaeI	CTAG	6 cut(s)	329, 543, 561, 572, 986, 1140
MaeII	ACGT	3 cut(s)	579, 594, 1386
MaeIII	GTNAC	1 cut(s)	236
MalI	GATC	5 cut(s)	46, 255, 899, 1104, 1373
MboI	GATC	5 cut(s)	44, 253, 897, 1102, 1371
MboII	GAAGA	6 cut(s)	162, 335, 1012, 1173, 1403, 1406
MhlI	GDGCHC	4 cut(s)	327, 480, 713, 985
MlsI	TGGCCA	2 cut(s)	29, 533
MluCI	AATT	9 cut(s)	187, 645, 907, 956, 1016, 1080, 1228, 1270, 1325
MluNI	TGGCCA	2 cut(s)	29, 533
MlyI	GAGTC	2 cut(s)	99, 1328
MmeI	TCCRAC	1 cut(s)	408
Mox20I	TGGCCA	2 cut(s)	29, 533
Mph1103I	ATGCAT	1 cut(s)	406
MscI	TGGCCA	2 cut(s)	29, 533
MseI	TTAA	8 cut(s)	192, 225, 537, 557, 734, 1002, 1062, 1179
MslI	CAYNNNNRTG	3 cut(s)	131, 353, 1379
Msp20I	TGGCCA	2 cut(s)	29, 533
MspI	CCGG	3 cut(s)	590, 875, 1379
MspR9I	CCNGG	3 cut(s)	131, 590, 621
MvaI	CCWGG	2 cut(s)	131, 621
MwoI	GCNNNNNNNGC	5 cut(s)	516, 539, 989, 1073, 1358
NciI	CCSGG	1 cut(s)	590
NdeII	GATC	5 cut(s)	44, 253, 897, 1102, 1371
NlaIII	CATG	7 cut(s)	58, 352, 408, 523, 839, 1211, 1378
NmuCI	GTSAC	1 cut(s)	236
NsiI	ATGCAT	1 cut(s)	406
NspI	RCATGY	2 cut(s)	408, 523
PaeI	GCATGC	1 cut(s)	523
PceI	AGGCCT	1 cut(s)	417
PcsI	WCGNNNNNNNCGW	2 cut(s)	1020, 1124
PfeI	GAWTC	5 cut(s)	448, 585, 851, 878, 1291
Pfl23II	CGTACG	1 cut(s)	576
PflMI	CCANNNNNTGG	1 cut(s)	153
PfoI	TCCNGGA	1 cut(s)	588
PkrI	GCNGC	6 cut(s)	124, 163, 776, 1172, 1175, 1432
PleI	GAGTC	2 cut(s)	99, 1328
PpsI	GAGTC	2 cut(s)	99, 1328
Ppu21I	YACGTR	1 cut(s)	580
PshBI	ATTAAT	1 cut(s)	537
Psp124BI	GAGCTC	1 cut(s)	327
Psp6I	CCWGG	2 cut(s)	129, 619
PspGI	CCWGG	2 cut(s)	129, 619
PspLI	CGTACG	1 cut(s)	576
PstI	CTGCAG	2 cut(s)	166, 1432
RsaI	GTAC	2 cut(s)	578, 725
RsaNI	GTAC	2 cut(s)	577, 724
RseI	CAYNNNNRTG	3 cut(s)	131, 353, 1379
SacI	GAGCTC	1 cut(s)	327
SalI	GTCGAC	1 cut(s)	4
SaqAI	TTAA	8 cut(s)	192, 225, 537, 557, 734, 1002, 1062, 1179
SatI	GCNGC	6 cut(s)	123, 162, 775, 1171, 1174, 1431
Sau3AI	GATC	5 cut(s)	44, 253, 897, 1102, 1371
SchI	GAGTC	2 cut(s)	99, 1328
ScrFI	CCNGG	3 cut(s)	131, 590, 621
SduI	GDGCHC	4 cut(s)	327, 480, 713, 985
SfaNI	GCATC	1 cut(s)	1275
SfcI	CTRYAG	3 cut(s)	162, 1428, 1434
SmiMI	CAYNNNNRTG	3 cut(s)	131, 353, 1379
SmlI	CTYRAG	2 cut(s)	778, 785
SmoI	CTYRAG	2 cut(s)	778, 785
SpeI	ACTAGT	1 cut(s)	560
SphI	GCATGC	1 cut(s)	523
Sse9I	AATT	9 cut(s)	187, 645, 907, 956, 1016, 1080, 1228, 1270, 1325
SseBI	AGGCCT	1 cut(s)	417
SsiI	CCGC	3 cut(s)	214, 508, 517
SspMI	CTAG	6 cut(s)	329, 543, 561, 572, 986, 1140
SstI	GAGCTC	1 cut(s)	327
StuI	AGGCCT	1 cut(s)	417
StyD4I	CCNGG	3 cut(s)	129, 588, 619
StyI	CCWWGG	2 cut(s)	524, 792
TaaI	ACNGT	2 cut(s)	317, 669
TaiI	ACGT	3 cut(s)	582, 597, 1389
TaqI	TCGA	9 cut(s)	5, 103, 598, 746, 826, 1014, 1023, 1101, 1127
TaqII	GACCGA	1 cut(s)	224
TasI	AATT	9 cut(s)	187, 645, 907, 956, 1016, 1080, 1228, 1270, 1325
TfiI	GAWTC	5 cut(s)	448, 585, 851, 878, 1291
Tru1I	TTAA	8 cut(s)	192, 225, 537, 557, 734, 1002, 1062, 1179
Tru9I	TTAA	8 cut(s)	192, 225, 537, 557, 734, 1002, 1062, 1179
TscAI	CASTG	2 cut(s)	478, 876
TseFI	GTSAC	1 cut(s)	236
TseI	GCWGC	6 cut(s)	122, 161, 774, 1170, 1173, 1430
Tsp45I	GTSAC	1 cut(s)	236
TspDTI	ATGAA	4 cut(s)	162, 259, 461, 824
TspGWI	ACGGA	1 cut(s)	624
TspRI	CASTG	2 cut(s)	478, 876
Van91I	CCANNNNNTGG	1 cut(s)	153
VneI	GTGCAC	1 cut(s)	981
VspI	ATTAAT	1 cut(s)	537
XapI	RAATTY	4 cut(s)	187, 645, 956, 1016
XceI	RCATGY	2 cut(s)	408, 523
XcmI	CCANNNNNNNNNTGG	2 cut(s)	22, 37
XmiI	GTMKAC	1 cut(s)	5
XspI	CTAG	6 cut(s)	329, 543, 561, 572, 986, 1140
Zsp2I	ATGCAT	1 cut(s)	406

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.