Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000204.1

Orthogroup ID

OG0004540

Physical Location & Seq

Genomic Coordinates Reverse (-)

62713 .. 64089

Gene Structure 1377 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000204.1_g000016.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1377 bp

atggccgtcaacgtattgggatcacctcacaaaatgcctcaccttcacgacttaccagaccttgttattgacaaaatccttgggttccttcctactaaagctgccgtccaggctacctttctttccgagcaatctgcagtttcttcagcgtctgcactaaatttcgacgaggctgatgattttcgacgtcacaacctcaatggccggggccgccgggttgcctaccgacagctacagctgctacacaacaagttcatcaacttcttgaaaggttatttagaatatcatgagaaatatgagaagaaagaggtcctagatgcactaaggcttcacatgaggttatgtatgtgtggagatgctactatcattgataggtggttggaacgtgcaattaatagaggtctcaaagaattagatattagccctcgaccaatggtggtgaaagctgaaaatatatatcgcttaccttgggtatcctttgctaataatgcacagtctcttactagtctaaatctggagtatgttagtatagcggacattcaaagtgcaaaatttaaaagggatgaaaagtaccttcttccctccttaaaaaccatgtccttcgaatgtgtgtggtttgatgacaaagctctcttctccttactattggagtgcccttccatcaagtatttgtcactgattgaatgccgctttggagacttcacgtgtcgtgtttcaagttcaactctcaagtccttgcaagttaagtattgcaagcggctacaatttgttcaagttgatgatgaagctaagaaccttgaatcttttacatttgtttctccgctaccaccaaattcaaaatgtgaaaaggtgatcttgaataataccttcaacttgaaaaatatcaccatttgtgttgatgacctatgggaattttctttaaacggataccatcgtacactaaaaggcacaatcgatgtccaaaatctctatcttttcgattttcttgggactctgaaggatgcattttctgttgaaggatgtcagtgggccaagattgcagttcgagaactttggttcaaaaattggttcgtacattactcttcacattttcctacattgattggttgtctcaaagaatttaggagatacaagaaaatatccctctataatcaagatctgaaggctctcatcattcctaatttttttaggaaggaattctcttcaccattgcctaagatttgcattctggaggtgaggatgccaaatccaccaacagaagcgagtagagattatttcgacttgatggactccttgcattggattgcaccttctgcagaagtggaaatctgcagaagtgaaacgcatcgtattgatgcattattaggagaatattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box

Protein Analysis

458

Amino Acids

53.13

Weight (kDa)

8.3

Isoelectric Point (pI)

45.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004540)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g33180 FvH4_4g33210 FvH4_4g33310 FvH4_4g33501
rosa_chinensis	RchiOBHm_Chr4g0442321 RchiOBHm_Chr4g0442821 RchiOBHm_Chr4g0442851 RchiOBHm_Chr4g0442941
rosa_multiflora	Rmu_co8426117.1_g000001 Rmu_sc0000124.1_g000038 Rmu_sc0000124.1_g000050 Rmu_sc0000124.1_g000054 Rmu_sc0007295.1_g000003 Rmu_sc0041664.1_g000001 Rmu_ssc0000204.1_g000015 Rmu_ssc0000204.1_g000016 Rmu_ssc0000204.1_g000050 Rmu_ssc0000204.1_g000053 Rmu_ssc0000204.1_g000057
rosa_roxburghii	Rroxscaffold_5G00383340 Rroxscaffold_5G00383620
rosa_rugosa	Rorug04G0343600
rosa_samantha	Rh4AG392000 Rh4AG393000 Rh4AG393300 Rh4AG396000 Rh4AG397300 Rh4BG406500
rosa_wichuraiana	Rw4G033860 Rw4G033950 Rw4G033970 Rw4G033980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	190
AciI	CCGC	5 cut(s)	211, 533, 688, 757, 821
AclWI	GGATC	1 cut(s)	28
AcoI	YGGCCR	2 cut(s)	3, 202
AcsI	RAATTY	6 cut(s)	160, 551, 832, 911, 1118, 1196
AcuI	CTGAAG	3 cut(s)	129, 1016, 1181
AcvI	CACGTG	1 cut(s)	705
AcyI	GRCGYC	1 cut(s)	187
AfaI	GTAC	3 cut(s)	572, 937, 1074
AfiI	CCNNNNNNNGG	1 cut(s)	1299
AflIII	ACRYGT	1 cut(s)	704
AhlI	ACTAGT	1 cut(s)	503
AjnI	CCWGG	1 cut(s)	108
AjuI	GAANNNNNNNTTGG	2 cut(s)	675, 707
AluBI	AGCT	6 cut(s)	101, 232, 238, 446, 629, 788
AluI	AGCT	6 cut(s)	101, 232, 238, 446, 629, 788
Alw26I	GTCTC	4 cut(s)	407, 501, 690, 1115
AlwI	GGATC	1 cut(s)	28
AlwNI	CAGNNNCTG	1 cut(s)	152
AoxI	GGCC	4 cut(s)	3, 202, 208, 1029
ApeKI	GCWGC	2 cut(s)	101, 238
ApoI	RAATTY	6 cut(s)	160, 551, 832, 911, 1118, 1196
AseI	ATTAAT	1 cut(s)	393
Asp700I	GAANNNNTTC	1 cut(s)	1196
AspS9I	GGNCC	3 cut(s)	208, 310, 1029
AsuC2I	CCSGG	2 cut(s)	206, 215
AsuHPI	GGTGA	7 cut(s)	15, 32, 451, 862, 877, 1197, 1246
AsuII	TTCGAA	1 cut(s)	603
AvaII	GGWCC	1 cut(s)	310
BaeGI	GKGCMC	1 cut(s)	656
BaeI	ACNNNNGTAYC	2 cut(s)	919, 952
BbrPI	CACGTG	1 cut(s)	705
BbvI	GCAGC	2 cut(s)	88, 225
BccI	CCATC	3 cut(s)	668, 939, 1279
BceAI	ACGGC	1 cut(s)	89
BcgI	CGANNNNNNTGC	2 cut(s)	116, 150
BciT130I	CCWGG	1 cut(s)	110
BciVI	GTATCC	2 cut(s)	484, 920
BcnI	CCSGG	2 cut(s)	206, 215
BcoDI	GTCTC	4 cut(s)	407, 501, 690, 1115
BcuI	ACTAGT	1 cut(s)	503
BfaI	CTAG	2 cut(s)	314, 504
BfmI	CTRYAG	4 cut(s)	135, 233, 1314, 1330
BfuI	GTATCC	2 cut(s)	484, 920
BglI	GCCNNNNNGGC	1 cut(s)	110
BglII	AGATCT	1 cut(s)	1156
BisI	GCNGC	5 cut(s)	102, 211, 239, 688, 758
BlsI	GCNGC	5 cut(s)	103, 212, 240, 689, 759
Bme1390I	CCNGG	3 cut(s)	110, 206, 215
Bme18I	GGWCC	1 cut(s)	310
BmgT120I	GGNCC	3 cut(s)	208, 310, 1029
BmiI	GGNNCC	2 cut(s)	86, 209
BmrFI	CCNGG	3 cut(s)	110, 206, 215
BmsI	GCATC	6 cut(s)	307, 346, 991, 1230, 1345, 1354
BpmI	CTGGAG	2 cut(s)	536, 1250
Bpu14I	TTCGAA	1 cut(s)	603
BpuEI	CTTGAG	1 cut(s)	713
BpuMI	CCSGG	2 cut(s)	206, 215
Bsa29I	ATCGAT	1 cut(s)	954
BsaAI	YACGTR	1 cut(s)	705
BsaHI	GRCGYC	1 cut(s)	187
BsaI	GGTCTC	1 cut(s)	407
BsaJI	CCNNGG	3 cut(s)	79, 205, 467
Bsc4I	CCNNNNNNNGG	1 cut(s)	1299
Bse3DI	GCAATG	1 cut(s)	1208
BseBI	CCWGG	1 cut(s)	110
BseCI	ATCGAT	1 cut(s)	954
BseDI	CCNNGG	3 cut(s)	79, 205, 467
BseGI	GGATG	4 cut(s)	568, 1006, 1025, 1245
BseLI	CCNNNNNNNGG	1 cut(s)	1299
BseMI	GCAATG	1 cut(s)	1208
BseSI	GKGCMC	1 cut(s)	656
BseXI	GCAGC	2 cut(s)	88, 225
BsgI	GTGCAG	1 cut(s)	138
BshFI	GGCC	4 cut(s)	5, 204, 210, 1031
BshVI	ATCGAT	1 cut(s)	954
BsiSI	CCGG	2 cut(s)	205, 214
BslFI	GGGAC	1 cut(s)	1003
BslI	CCNNNNNNNGG	1 cut(s)	1299
BsmAI	GTCTC	4 cut(s)	407, 501, 690, 1115
BsmFI	GGGAC	1 cut(s)	1003
BsmI	GAATGC	2 cut(s)	689, 1224
BsnI	GGCC	4 cut(s)	5, 204, 210, 1031
Bso31I	GGTCTC	1 cut(s)	407
Bsp119I	TTCGAA	1 cut(s)	603
Bsp1286I	GDGCHC	1 cut(s)	656
Bsp143I	GATC	3 cut(s)	20, 852, 1156
BspACI	CCGC	5 cut(s)	211, 533, 688, 757, 821
BspANI	GGCC	4 cut(s)	5, 204, 210, 1031
BspDI	ATCGAT	1 cut(s)	954
BspHI	TCATGA	1 cut(s)	286
BspLI	GGNNCC	2 cut(s)	86, 209
BspMAI	CTGCAG	3 cut(s)	139, 1318, 1334
BspPI	GGATC	1 cut(s)	28
BspT104I	TTCGAA	1 cut(s)	603
BspTNI	GGTCTC	1 cut(s)	407
BsrDI	GCAATG	1 cut(s)	1208
BssECI	CCNNGG	3 cut(s)	79, 205, 467
BssMI	GATC	3 cut(s)	20, 852, 1156
BssNI	GRCGYC	1 cut(s)	187
BssT1I	CCWWGG	2 cut(s)	79, 467
Bst2UI	CCWGG	1 cut(s)	110
Bst4CI	ACNGT	1 cut(s)	495
Bst6I	CTCTTC	3 cut(s)	638, 1087, 1207
BstACI	GRCGYC	1 cut(s)	187
BstAPI	GCANNNNNTGC	1 cut(s)	1313
BstBAI	YACGTR	1 cut(s)	705
BstBI	TTCGAA	1 cut(s)	603
BstC8I	GCNNGC	1 cut(s)	755
BstDEI	CTNAG	3 cut(s)	323, 789, 1215
BstF5I	GGATG	4 cut(s)	568, 1006, 1025, 1245
BstKTI	GATC	3 cut(s)	23, 855, 1159
BstMAI	GTCTC	4 cut(s)	407, 501, 690, 1115
BstMBI	GATC	3 cut(s)	20, 852, 1156
BstMWI	GCNNNNNNNGC	6 cut(s)	110, 210, 238, 488, 1037, 1313
BstNI	CCWGG	1 cut(s)	110
BstSCI	CCNGG	3 cut(s)	108, 204, 213
BstSFI	CTRYAG	4 cut(s)	135, 233, 1314, 1330
BstSLI	GKGCMC	1 cut(s)	656
BstV1I	GCAGC	2 cut(s)	88, 225
BstX2I	RGATCY	1 cut(s)	1156
BstYI	RGATCY	1 cut(s)	1156
Bsu15I	ATCGAT	1 cut(s)	954
BsuI	GTATCC	2 cut(s)	484, 920
BsuRI	GGCC	4 cut(s)	5, 204, 210, 1031
BsuTUI	ATCGAT	1 cut(s)	954
BtsCI	GGATG	4 cut(s)	568, 1006, 1025, 1245
BtsIMutI	CAGTG	2 cut(s)	674, 1031
Cac8I	GCNNGC	1 cut(s)	755
CaiI	CAGNNNCTG	1 cut(s)	152
CciI	TCATGA	1 cut(s)	286
Cfr13I	GGNCC	3 cut(s)	208, 310, 1029
ClaI	ATCGAT	1 cut(s)	954
CseI	GACGC	1 cut(s)	138
Csp6I	GTAC	3 cut(s)	571, 936, 1073
CviAII	CATG	3 cut(s)	287, 334, 595
CviQI	GTAC	3 cut(s)	571, 936, 1073
DdeI	CTNAG	3 cut(s)	323, 789, 1215
DpnI	GATC	3 cut(s)	22, 854, 1158
DpnII	GATC	3 cut(s)	20, 852, 1156
DraI	TTTAAA	2 cut(s)	556, 921
EaeI	YGGCCR	2 cut(s)	3, 202
Eam1104I	CTCTTC	3 cut(s)	638, 1087, 1207
EarI	CTCTTC	3 cut(s)	638, 1087, 1207
Eco130I	CCWWGG	2 cut(s)	79, 467
Eco31I	GGTCTC	1 cut(s)	407
Eco47I	GGWCC	1 cut(s)	310
Eco57I	CTGAAG	3 cut(s)	129, 1016, 1181
Eco72I	CACGTG	1 cut(s)	705
EcoO109I	RGGNCCY	1 cut(s)	310
EcoRI	GAATTC	1 cut(s)	1196
EcoRII	CCWGG	1 cut(s)	108
EcoT14I	CCWWGG	2 cut(s)	79, 467
EcoT22I	ATGCAT	2 cut(s)	1006, 1360
ErhI	CCWWGG	2 cut(s)	79, 467
FaeI	CATG	3 cut(s)	290, 337, 598
FalI	AAGNNNNNCTT	2 cut(s)	839, 871
FaqI	GGGAC	1 cut(s)	1003
FatI	CATG	3 cut(s)	286, 333, 594
Fnu4HI	GCNGC	5 cut(s)	102, 211, 239, 688, 758
FokI	GGATG	4 cut(s)	575, 1013, 1032, 1252
Fsp4HI	GCNGC	5 cut(s)	102, 211, 239, 688, 758
FspBI	CTAG	2 cut(s)	314, 504
GluI	GCNGC	5 cut(s)	102, 211, 239, 688, 758
GsuI	CTGGAG	2 cut(s)	536, 1250
HaeIII	GGCC	4 cut(s)	5, 204, 210, 1031
HapII	CCGG	2 cut(s)	205, 214
HgaI	GACGC	1 cut(s)	138
Hin1I	GRCGYC	1 cut(s)	187
Hin1II	CATG	3 cut(s)	290, 337, 598
HincII	GTYRAC	1 cut(s)	10
HindII	GTYRAC	1 cut(s)	10
HinfI	GANTC	3 cut(s)	800, 991, 1289
HpaII	CCGG	2 cut(s)	205, 214
HphI	GGTGA	7 cut(s)	15, 32, 451, 862, 877, 1197, 1246
Hpy166II	GTNNAC	2 cut(s)	10, 938
Hpy188I	TCNGA	3 cut(s)	127, 996, 1161
Hpy188III	TCNNGA	8 cut(s)	47, 265, 287, 515, 856, 1046, 1154, 1229
Hpy8I	GTNNAC	2 cut(s)	10, 938
Hpy99I	CGWCG	2 cut(s)	170, 189
HpyCH4III	ACNGT	1 cut(s)	495
HpyCH4IV	ACGT	4 cut(s)	12, 187, 385, 704
HpyF10VI	GCNNNNNNNGC	6 cut(s)	110, 210, 238, 488, 1037, 1313
HpyF3I	CTNAG	3 cut(s)	323, 789, 1215
HpySE526I	ACGT	4 cut(s)	12, 187, 385, 704
Hsp92I	GRCGYC	1 cut(s)	187
Hsp92II	CATG	3 cut(s)	290, 337, 598
Kzo9I	GATC	3 cut(s)	20, 852, 1156
LpnPI	CCDG	7 cut(s)	69, 95, 122, 218, 227, 500, 1214
Lsp1109I	GCAGC	2 cut(s)	88, 225
LweI	GCATC	6 cut(s)	307, 346, 991, 1230, 1345, 1354
MaeI	CTAG	2 cut(s)	314, 504
MaeII	ACGT	4 cut(s)	12, 187, 385, 704
MaeIII	GTNAC	2 cut(s)	188, 672
MalI	GATC	3 cut(s)	22, 854, 1158
MboI	GATC	3 cut(s)	20, 852, 1156
MboII	GAAGA	6 cut(s)	135, 313, 569, 625, 1074, 1194
MflI	RGATCY	1 cut(s)	1156
MhlI	GDGCHC	1 cut(s)	656
MlyI	GAGTC	2 cut(s)	985, 1283
MmeI	TCCRAC	1 cut(s)	360
Mph1103I	ATGCAT	2 cut(s)	1006, 1360
MroXI	GAANNNNTTC	1 cut(s)	1196
MseI	TTAA	5 cut(s)	393, 555, 587, 744, 920
MspA1I	CMGCKG	1 cut(s)	238
MspI	CCGG	2 cut(s)	205, 214
MspR9I	CCNGG	3 cut(s)	110, 206, 215
Mva1269I	GAATGC	2 cut(s)	689, 1224
MvaI	CCWGG	1 cut(s)	110
MwoI	GCNNNNNNNGC	6 cut(s)	110, 210, 238, 488, 1037, 1313
NciI	CCSGG	2 cut(s)	206, 215
NdeII	GATC	3 cut(s)	20, 852, 1156
NlaIII	CATG	3 cut(s)	290, 337, 598
NlaIV	GGNNCC	2 cut(s)	86, 209
NmuCI	GTSAC	2 cut(s)	188, 672
NsiI	ATGCAT	2 cut(s)	1006, 1360
NspV	TTCGAA	1 cut(s)	603
PagI	TCATGA	1 cut(s)	286
PctI	GAATGC	2 cut(s)	689, 1224
PdmI	GAANNNNTTC	1 cut(s)	1196
PfeI	GAWTC	1 cut(s)	800
PkrI	GCNGC	5 cut(s)	103, 212, 240, 689, 759
PleI	GAGTC	2 cut(s)	985, 1283
PmaCI	CACGTG	1 cut(s)	705
PmlI	CACGTG	1 cut(s)	705
PpsI	GAGTC	2 cut(s)	985, 1283
Ppu21I	YACGTR	1 cut(s)	705
PpuMI	RGGWCCY	1 cut(s)	310
PshBI	ATTAAT	1 cut(s)	393
Psp5II	RGGWCCY	1 cut(s)	310
Psp6I	CCWGG	1 cut(s)	108
PspCI	CACGTG	1 cut(s)	705
PspGI	CCWGG	1 cut(s)	108
PspN4I	GGNNCC	2 cut(s)	86, 209
PspPI	GGNCC	3 cut(s)	208, 310, 1029
PspPPI	RGGWCCY	1 cut(s)	310
PstI	CTGCAG	3 cut(s)	139, 1318, 1334
PstNI	CAGNNNCTG	1 cut(s)	152
PsuI	RGATCY	1 cut(s)	1156
PvuII	CAGCTG	1 cut(s)	238
RsaI	GTAC	3 cut(s)	572, 937, 1074
RsaNI	GTAC	3 cut(s)	571, 936, 1073
SaqAI	TTAA	5 cut(s)	393, 555, 587, 744, 920
SatI	GCNGC	5 cut(s)	102, 211, 239, 688, 758
Sau3AI	GATC	3 cut(s)	20, 852, 1156
Sau96I	GGNCC	3 cut(s)	208, 310, 1029
SchI	GAGTC	2 cut(s)	985, 1283
ScrFI	CCNGG	3 cut(s)	110, 206, 215
SduI	GDGCHC	1 cut(s)	656
SfaNI	GCATC	6 cut(s)	307, 346, 991, 1230, 1345, 1354
SfcI	CTRYAG	4 cut(s)	135, 233, 1314, 1330
SfuI	TTCGAA	1 cut(s)	603
SinI	GGWCC	1 cut(s)	310
SmlI	CTYRAG	1 cut(s)	728
SmoI	CTYRAG	1 cut(s)	728
SpeI	ACTAGT	1 cut(s)	503
SsiI	CCGC	5 cut(s)	211, 533, 688, 757, 821
SspI	AATATT	1 cut(s)	1373
SspMI	CTAG	2 cut(s)	314, 504
StyD4I	CCNGG	3 cut(s)	108, 204, 213
StyI	CCWWGG	2 cut(s)	79, 467
TaaI	ACNGT	1 cut(s)	495
TaiI	ACGT	4 cut(s)	15, 190, 388, 707
TaqI	TCGA	8 cut(s)	165, 184, 427, 603, 954, 978, 1045, 1278
TauI	GCSGC	3 cut(s)	213, 690, 760
TfiI	GAWTC	1 cut(s)	800
Tru1I	TTAA	5 cut(s)	393, 555, 587, 744, 920
Tru9I	TTAA	5 cut(s)	393, 555, 587, 744, 920
TscAI	CASTG	2 cut(s)	681, 1031
TseFI	GTSAC	2 cut(s)	188, 672
TseI	GCWGC	2 cut(s)	101, 238
Tsp45I	GTSAC	2 cut(s)	188, 672
TspDTI	ATGAA	3 cut(s)	244, 579, 798
TspGWI	ACGGA	1 cut(s)	939
TspRI	CASTG	2 cut(s)	681, 1031
VpaK11BI	GGWCC	1 cut(s)	310
VspI	ATTAAT	1 cut(s)	393
XapI	RAATTY	6 cut(s)	160, 551, 832, 911, 1118, 1196
XmnI	GAANNNNTTC	1 cut(s)	1196
XspI	CTAG	2 cut(s)	314, 504
ZraI	GACGTC	1 cut(s)	188
Zsp2I	ATGCAT	2 cut(s)	1006, 1360

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.