Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0004540

Physical Location & Seq

Genomic Coordinates Reverse (-)

61095325 .. 61096698

Gene Structure 1374 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G033950.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1212 bp

ATGGCTGACCTTCACGACTTACCTGACCTTGTTATTGACAAAATCCTTCAACTCCTTCCCACTAAAGCTGCCGTCCAGGTGAGCTTTCTTTCCAAGAAATGGCAGGGTGTAGTCTCTTTATTCCCTGCACTAAATTTCAACGAGGATGATGATTTTGACTGCCACAACCTAAATCGTTACGGTCACTACCAACATCAACACAAGAGGTTCATCAACTTTTTGAAGGGGCATTTAGATTATCGTGAGAAATACGACCAGAAAGAGCTCCTAGATAAACTAAGTCTTCACATGAGGAGGTATGGGCGTCGAGATTCTTCTACCATAACCAAGTGGTTGAAATATGCATGTCAGAGAGGCCTCAAAGAGTTGGATATCAGTCCTAAAATGAGTGTTGACCCAAAACAATATGGGGTTGTCACTAAGCGCCCAGACTTCTACCGCTTGCCTTGGGTGGCCATTGCTACTGCAAAATCTTTAACTAGTCTAAAACTAGAGTCTGTGAGTATCCCGCACGTTCGACTAAGCGATTCTCCAACTCCTGGGCGATTTTTGAAATTTTTTCCGTCTTTGAAAACTCTGTCCTTCAGAACTGCACGGTTTTTTACTGACCAAGATCTCTATTCTGTTCTATATGAGTGCCCTTCCATCGAGTACCTGTCATTAACTGAATGTTCGATTGGAAACTCCAAGTGTTATGTTTGCTGCTCAAGTCTAAAGTCGTTGGAAGTTAAGTATTGCCGGATTCAAGATATTCGAGTTGATCAGGCCTTCAATCTTGAATCTTTTACATTTGTCTCACCGCTGGATTCAAAATGTGAAAAGATGATCTTGAATAATGCCTTCAAGTTGACATATACAAACATTTGTGTTGATTACCTCCAGGAATTTTCTTTATTGGGAAGCCACCGTGCACTAGAGGCCACCATCATTACCCAGTATGTCCAATTCTTCGACTTTATTAGAAGATTTAGCTGCTGCCAGAAAATAAACCTCTACAATCAAGATATGACCTCCTCTCCACCATTGCCTAAAACTTCCACTTTGCAGGTGCGGATGCCGAATCCACCAATAATGGGAAGTAGAGACTATTTGGAATTGGACGACTCCTTACAATGGATTGCACCTTTTGCACAGATAGTGATCATGCCGGTGGACGTTGAAGAAGACAGAAAGAAAGTAGACCAGCGAGCTAGTCCTGTAGGCCATAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box

Protein Analysis

403

Amino Acids

46.8

Weight (kDa)

8.68

Isoelectric Point (pI)

46.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_At1g61320_AtMIF1	PF23622	92 - 269	9.9e-07	At1g61320/AtMIF1, LRR domain
LRR_At5g56370	PF24758	109 - 285	1.8e-12	FBD-associated F-box protein At5g56370, LRR repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004540)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g33180 FvH4_4g33210 FvH4_4g33310 FvH4_4g33501
rosa_chinensis	RchiOBHm_Chr4g0442321 RchiOBHm_Chr4g0442821 RchiOBHm_Chr4g0442851 RchiOBHm_Chr4g0442941
rosa_multiflora	Rmu_co8426117.1_g000001 Rmu_sc0000124.1_g000038 Rmu_sc0000124.1_g000050 Rmu_sc0000124.1_g000054 Rmu_sc0007295.1_g000003 Rmu_sc0041664.1_g000001 Rmu_ssc0000204.1_g000015 Rmu_ssc0000204.1_g000016 Rmu_ssc0000204.1_g000050 Rmu_ssc0000204.1_g000053 Rmu_ssc0000204.1_g000057
rosa_roxburghii	Rroxscaffold_5G00383340 Rroxscaffold_5G00383620
rosa_rugosa	Rorug04G0343600
rosa_samantha	Rh4AG392000 Rh4AG393000 Rh4AG393300 Rh4AG396000 Rh4AG397300 Rh4BG406500
rosa_wichuraiana	Rw4G033860 Rw4G033950 Rw4G033970 Rw4G033980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1036
Acc36I	ACCTGC	1 cut(s)	1036
AccB7I	CCANNNNNTGG	2 cut(s)	99, 539
AccI	GTMKAC	1 cut(s)	1179
AciI	CCGC	4 cut(s)	439, 509, 800, 1051
AcoI	YGGCCR	1 cut(s)	453
AcsI	RAATTY	3 cut(s)	133, 554, 884
AcuI	CTGAAG	1 cut(s)	568
AcyI	GRCGYC	1 cut(s)	304
AfaI	GTAC	1 cut(s)	653
AfiI	CCNNNNNNNGG	4 cut(s)	99, 539, 1073, 1113
AhlI	ACTAGT	1 cut(s)	479
AjnI	CCWGG	3 cut(s)	75, 538, 879
AjuI	GAANNNNNNNTTGG	2 cut(s)	660, 692
AluBI	AGCT	5 cut(s)	68, 84, 265, 972, 1190
AluI	AGCT	5 cut(s)	68, 84, 265, 972, 1190
Alw21I	GWGCWC	2 cut(s)	267, 913
Alw26I	GTCTC	3 cut(s)	118, 799, 1077
Alw44I	GTGCAC	1 cut(s)	909
AoxI	GGCC	5 cut(s)	355, 453, 765, 918, 1201
ApaLI	GTGCAC	1 cut(s)	909
ApeKI	GCWGC	4 cut(s)	68, 702, 972, 975
ApoI	RAATTY	3 cut(s)	133, 554, 884
AspLEI	GCGC	1 cut(s)	426
AsuHPI	GGTGA	2 cut(s)	91, 789
BaeGI	GKGCMC	2 cut(s)	641, 913
BalI	TGGCCA	1 cut(s)	455
BanII	GRGCYC	1 cut(s)	267
BbsI	GAAGAC	2 cut(s)	275, 1170
Bbv12I	GWGCWC	2 cut(s)	267, 913
BbvI	GCAGC	4 cut(s)	55, 689, 959, 962
BccI	CCATC	2 cut(s)	653, 932
BceAI	ACGGC	1 cut(s)	56
BciT130I	CCWGG	3 cut(s)	77, 540, 881
BciVI	GTATCC	1 cut(s)	515
BclI	TGATCA	2 cut(s)	760, 1140
BcoDI	GTCTC	3 cut(s)	118, 799, 1077
BcuI	ACTAGT	1 cut(s)	479
BfaI	CTAG	5 cut(s)	269, 480, 491, 914, 1191
BfmI	CTRYAG	1 cut(s)	1197
BfoI	RGCGCY	1 cut(s)	427
BfuAI	ACCTGC	1 cut(s)	1036
BfuI	GTATCC	1 cut(s)	515
BglII	AGATCT	1 cut(s)	613
BisI	GCNGC	4 cut(s)	69, 703, 973, 976
BlsI	GCNGC	4 cut(s)	70, 704, 974, 977
Bme1390I	CCNGG	3 cut(s)	77, 540, 881
BmrFI	CCNGG	3 cut(s)	77, 540, 881
BmrI	ACTGGG	1 cut(s)	928
BmsI	GCATC	1 cut(s)	1044
BmuI	ACTGGG	1 cut(s)	928
BpiI	GAAGAC	2 cut(s)	275, 1170
BpmI	CTGGAG	1 cut(s)	863
BpuEI	CTTGAG	1 cut(s)	691
BsaBI	GATNNNNATC	1 cut(s)	1139
BsaHI	GRCGYC	1 cut(s)	304
BsaJI	CCNNGG	2 cut(s)	446, 539
BsaXI	ACNNNNNCTCC	2 cut(s)	1000, 1030
Bsc4I	CCNNNNNNNGG	4 cut(s)	99, 539, 1073, 1113
Bse118I	RCCGGY	1 cut(s)	1147
Bse1I	ACTGG	1 cut(s)	934
Bse3DI	GCAATG	2 cut(s)	456, 1022
Bse8I	GATNNNNATC	1 cut(s)	1139
BseBI	CCWGG	3 cut(s)	77, 540, 881
BseDI	CCNNGG	2 cut(s)	446, 539
BseGI	GGATG	2 cut(s)	151, 1059
BseJI	GATNNNNATC	1 cut(s)	1139
BseLI	CCNNNNNNNGG	4 cut(s)	99, 539, 1073, 1113
BseMI	GCAATG	2 cut(s)	456, 1022
BseNI	ACTGG	1 cut(s)	934
BseRI	GAGGAG	2 cut(s)	307, 1003
BseSI	GKGCMC	2 cut(s)	641, 913
BseXI	GCAGC	4 cut(s)	55, 689, 959, 962
BsgI	GTGCAG	2 cut(s)	111, 576
BshFI	GGCC	5 cut(s)	357, 455, 767, 920, 1203
BsiHKAI	GWGCWC	2 cut(s)	267, 913
BsiSI	CCGG	2 cut(s)	739, 1148
BslI	CCNNNNNNNGG	4 cut(s)	99, 539, 1073, 1113
BsmAI	GTCTC	3 cut(s)	118, 799, 1077
BsnI	GGCC	5 cut(s)	357, 455, 767, 920, 1203
Bsp1286I	GDGCHC	3 cut(s)	267, 641, 913
Bsp143I	GATC	4 cut(s)	613, 760, 825, 1140
BspACI	CCGC	4 cut(s)	439, 509, 800, 1051
BspANI	GGCC	5 cut(s)	357, 455, 767, 920, 1203
BspMI	ACCTGC	1 cut(s)	1036
BsrDI	GCAATG	2 cut(s)	456, 1022
BsrFI	RCCGGY	1 cut(s)	1147
BsrI	ACTGG	1 cut(s)	934
BssAI	RCCGGY	1 cut(s)	1147
BssECI	CCNNGG	2 cut(s)	446, 539
BssMI	GATC	4 cut(s)	613, 760, 825, 1140
BssNI	GRCGYC	1 cut(s)	304
BssT1I	CCWWGG	1 cut(s)	446
Bst2UI	CCWGG	3 cut(s)	77, 540, 881
Bst4CI	ACNGT	3 cut(s)	182, 597, 908
BstACI	GRCGYC	1 cut(s)	304
BstAPI	GCANNNNNTGC	1 cut(s)	1127
BstC8I	GCNNGC	2 cut(s)	443, 1188
BstDEI	CTNAG	3 cut(s)	278, 420, 521
BstF5I	GGATG	2 cut(s)	151, 1059
BstH2I	RGCGCY	1 cut(s)	427
BstHHI	GCGC	1 cut(s)	426
BstKTI	GATC	4 cut(s)	616, 763, 828, 1143
BstMAI	GTCTC	3 cut(s)	118, 799, 1077
BstMBI	GATC	4 cut(s)	613, 760, 825, 1140
BstMWI	GCNNNNNNNGC	2 cut(s)	917, 1127
BstNI	CCWGG	3 cut(s)	77, 540, 881
BstNSI	RCATGY	1 cut(s)	348
BstSCI	CCNGG	3 cut(s)	75, 538, 879
BstSFI	CTRYAG	1 cut(s)	1197
BstSLI	GKGCMC	2 cut(s)	641, 913
BstV1I	GCAGC	4 cut(s)	55, 689, 959, 962
BstV2I	GAAGAC	2 cut(s)	275, 1170
BstX2I	RGATCY	1 cut(s)	613
BstYI	RGATCY	1 cut(s)	613
BsuI	GTATCC	1 cut(s)	515
BsuRI	GGCC	5 cut(s)	357, 455, 767, 920, 1203
BtsCI	GGATG	2 cut(s)	151, 1059
BveI	ACCTGC	1 cut(s)	1036
Cac8I	GCNNGC	2 cut(s)	443, 1188
CfoI	GCGC	1 cut(s)	426
Cfr10I	RCCGGY	1 cut(s)	1147
CseI	GACGC	1 cut(s)	293
Csp6I	GTAC	1 cut(s)	652
CviAII	CATG	3 cut(s)	289, 345, 1144
CviQI	GTAC	1 cut(s)	652
DdeI	CTNAG	3 cut(s)	278, 420, 521
DpnI	GATC	4 cut(s)	615, 762, 827, 1142
DpnII	GATC	4 cut(s)	613, 760, 825, 1140
EaeI	YGGCCR	1 cut(s)	453
Ecl136II	GAGCTC	1 cut(s)	265
Eco130I	CCWWGG	1 cut(s)	446
Eco147I	AGGCCT	2 cut(s)	357, 767
Eco24I	GRGCYC	1 cut(s)	267
Eco32I	GATATC	1 cut(s)	373
Eco53kI	GAGCTC	1 cut(s)	265
Eco57I	CTGAAG	1 cut(s)	568
EcoICRI	GAGCTC	1 cut(s)	265
EcoRII	CCWGG	3 cut(s)	75, 538, 879
EcoRV	GATATC	1 cut(s)	373
EcoT14I	CCWWGG	1 cut(s)	446
EcoT22I	ATGCAT	1 cut(s)	346
EcoT38I	GRGCYC	1 cut(s)	267
ErhI	CCWWGG	1 cut(s)	446
FaeI	CATG	3 cut(s)	292, 348, 1147
FalI	AAGNNNNNCTT	2 cut(s)	812, 844
FatI	CATG	3 cut(s)	288, 344, 1143
FauI	CCCGC	1 cut(s)	516
FbaI	TGATCA	2 cut(s)	760, 1140
FblI	GTMKAC	1 cut(s)	1179
Fnu4HI	GCNGC	4 cut(s)	69, 703, 973, 976
FokI	GGATG	2 cut(s)	158, 1066
FriOI	GRGCYC	1 cut(s)	267
Fsp4HI	GCNGC	4 cut(s)	69, 703, 973, 976
FspBI	CTAG	5 cut(s)	269, 480, 491, 914, 1191
GlaI	GCGC	1 cut(s)	425
GluI	GCNGC	4 cut(s)	69, 703, 973, 976
GsuI	CTGGAG	1 cut(s)	863
HaeII	RGCGCY	1 cut(s)	427
HaeIII	GGCC	5 cut(s)	357, 455, 767, 920, 1203
HapII	CCGG	2 cut(s)	739, 1148
HgaI	GACGC	1 cut(s)	293
HhaI	GCGC	1 cut(s)	426
Hin1I	GRCGYC	1 cut(s)	304
Hin1II	CATG	3 cut(s)	292, 348, 1147
Hin6I	GCGC	1 cut(s)	424
HinP1I	GCGC	1 cut(s)	424
HincII	GTYRAC	2 cut(s)	394, 849
HindII	GTYRAC	2 cut(s)	394, 849
HinfI	GANTC	8 cut(s)	311, 494, 527, 742, 779, 806, 1060, 1103
HpaII	CCGG	2 cut(s)	739, 1148
HphI	GGTGA	2 cut(s)	91, 789
Hpy166II	GTNNAC	5 cut(s)	394, 849, 911, 1153, 1180
Hpy188I	TCNGA	2 cut(s)	351, 587
Hpy188III	TCNNGA	7 cut(s)	14, 242, 308, 746, 776, 829, 1001
Hpy8I	GTNNAC	5 cut(s)	394, 849, 911, 1153, 1180
Hpy99I	CGWCG	1 cut(s)	309
HpyAV	CCTTC	8 cut(s)	20, 56, 65, 217, 592, 651, 778, 850
HpyCH4III	ACNGT	3 cut(s)	182, 597, 908
HpyCH4IV	ACGT	2 cut(s)	513, 1155
HpyCH4V	TGCA	8 cut(s)	128, 344, 467, 593, 911, 1045, 1121, 1130
HpyF10VI	GCNNNNNNNGC	2 cut(s)	917, 1127
HpyF3I	CTNAG	3 cut(s)	278, 420, 521
HpySE526I	ACGT	2 cut(s)	513, 1155
Hsp92I	GRCGYC	1 cut(s)	304
Hsp92II	CATG	3 cut(s)	292, 348, 1147
HspAI	GCGC	1 cut(s)	424
Ksp22I	TGATCA	2 cut(s)	760, 1140
Kzo9I	GATC	4 cut(s)	613, 760, 825, 1140
LmnI	GCTCC	1 cut(s)	270
Lsp1109I	GCAGC	4 cut(s)	55, 689, 959, 962
LweI	GCATC	1 cut(s)	1044
MaeI	CTAG	5 cut(s)	269, 480, 491, 914, 1191
MaeII	ACGT	2 cut(s)	513, 1155
MaeIII	GTNAC	3 cut(s)	176, 182, 415
MalI	GATC	4 cut(s)	615, 762, 827, 1142
MboI	GATC	4 cut(s)	613, 760, 825, 1140
MboII	GAAGA	6 cut(s)	275, 306, 940, 975, 1172, 1175
MflI	RGATCY	1 cut(s)	613
MhlI	GDGCHC	3 cut(s)	267, 641, 913
MlsI	TGGCCA	1 cut(s)	455
MluCI	AATT	5 cut(s)	133, 554, 884, 944, 1094
MluNI	TGGCCA	1 cut(s)	455
MlyI	GAGTC	2 cut(s)	503, 1097
MmeI	TCCRAC	3 cut(s)	348, 557, 702
Mox20I	TGGCCA	1 cut(s)	455
Mph1103I	ATGCAT	1 cut(s)	346
MscI	TGGCCA	1 cut(s)	455
MseI	TTAA	3 cut(s)	476, 662, 729
MslI	CAYNNNNRTG	1 cut(s)	1148
Msp20I	TGGCCA	1 cut(s)	455
MspA1I	CMGCKG	1 cut(s)	802
MspI	CCGG	2 cut(s)	739, 1148
MspR9I	CCNGG	3 cut(s)	77, 540, 881
MvaI	CCWGG	3 cut(s)	77, 540, 881
MwoI	GCNNNNNNNGC	2 cut(s)	917, 1127
NdeII	GATC	4 cut(s)	613, 760, 825, 1140
NlaIII	CATG	3 cut(s)	292, 348, 1147
NmuCI	GTSAC	2 cut(s)	182, 415
NsiI	ATGCAT	1 cut(s)	346
NspI	RCATGY	1 cut(s)	348
PaqCI	CACCTGC	1 cut(s)	1036
PceI	AGGCCT	2 cut(s)	357, 767
PfeI	GAWTC	6 cut(s)	311, 527, 742, 779, 806, 1060
PflMI	CCANNNNNTGG	2 cut(s)	99, 539
PfoI	TCCNGGA	1 cut(s)	879
PkrI	GCNGC	4 cut(s)	70, 704, 974, 977
PleI	GAGTC	2 cut(s)	502, 1097
PpsI	GAGTC	2 cut(s)	502, 1097
Psp124BI	GAGCTC	1 cut(s)	267
Psp6I	CCWGG	3 cut(s)	75, 538, 879
PspGI	CCWGG	3 cut(s)	75, 538, 879
PsuI	RGATCY	1 cut(s)	613
RsaI	GTAC	1 cut(s)	653
RsaNI	GTAC	1 cut(s)	652
RseI	CAYNNNNRTG	1 cut(s)	1148
SacI	GAGCTC	1 cut(s)	267
SaqAI	TTAA	3 cut(s)	476, 662, 729
SatI	GCNGC	4 cut(s)	69, 703, 973, 976
Sau3AI	GATC	4 cut(s)	613, 760, 825, 1140
SchI	GAGTC	2 cut(s)	503, 1097
ScrFI	CCNGG	3 cut(s)	77, 540, 881
SduI	GDGCHC	3 cut(s)	267, 641, 913
SfaNI	GCATC	1 cut(s)	1044
SfcI	CTRYAG	1 cut(s)	1197
SmiMI	CAYNNNNRTG	1 cut(s)	1148
SmlI	CTYRAG	1 cut(s)	706
SmoI	CTYRAG	1 cut(s)	706
SpeI	ACTAGT	1 cut(s)	479
Sse9I	AATT	5 cut(s)	133, 554, 884, 944, 1094
SseBI	AGGCCT	2 cut(s)	357, 767
SsiI	CCGC	4 cut(s)	439, 509, 800, 1051
SspMI	CTAG	5 cut(s)	269, 480, 491, 914, 1191
SstI	GAGCTC	1 cut(s)	267
StuI	AGGCCT	2 cut(s)	357, 767
StyD4I	CCNGG	3 cut(s)	75, 538, 879
StyI	CCWWGG	1 cut(s)	446
TaaI	ACNGT	3 cut(s)	182, 597, 908
TaiI	ACGT	2 cut(s)	516, 1158
TaqI	TCGA	6 cut(s)	307, 517, 648, 674, 754, 951
TasI	AATT	5 cut(s)	133, 554, 884, 944, 1094
TfiI	GAWTC	6 cut(s)	311, 527, 742, 779, 806, 1060
Tru1I	TTAA	3 cut(s)	476, 662, 729
Tru9I	TTAA	3 cut(s)	476, 662, 729
TseFI	GTSAC	2 cut(s)	182, 415
TseI	GCWGC	4 cut(s)	68, 702, 972, 975
Tsp45I	GTSAC	2 cut(s)	182, 415
TspDTI	ATGAA	1 cut(s)	199
TspGWI	ACGGA	1 cut(s)	552
Van91I	CCANNNNNTGG	2 cut(s)	99, 539
VneI	GTGCAC	1 cut(s)	909
XapI	RAATTY	3 cut(s)	133, 554, 884
XceI	RCATGY	1 cut(s)	348
XmiI	GTMKAC	1 cut(s)	1179
XspI	CTAG	5 cut(s)	269, 480, 491, 914, 1191
Zsp2I	ATGCAT	1 cut(s)	346

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.