Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000204.1

Orthogroup ID

OG0004540

Physical Location & Seq

Genomic Coordinates Forward (+)

248291 .. 249694

Gene Structure 1404 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000204.1_g000053.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1404 bp

atggccatcagcacattgggatcaccgcacatggctgaccttcacgacttacctgaccttgttattgacaaaatccttcaactccttcccactaaagctgccgtccaggtgagctttctttccaagaaatggcagggtgtagtctctttattccctgcactaaatttcaacgaggatgatgattttgaccgccacaacctaaatcgttacggtcactaccaacatcaacacaagaggttcatcaactttttgaaggggcatttagattatcgtgagaaatacgaccagaaagagctcctagataaactaagtcttcacatgaggaggtatgggcgtcgagattcttataccataaccaagtggttgaaatatgcatgtcagagaggcctcaaagagttggatatcagtcctaaaatgagtgttgacccaaaacaatatggggttgtcactaagcgcccagacttctacagcttgccttgggtggccattgctactgcaaaatctttaactagtctaaaactagagtctgtgagaatcccgcacgttcgactaagcgattctccaactcctgggcgatttttgaaattttttccgtctttgaaaactctgtccttcagaactgcacggttttttactgaccaagatctctattctgttctatatgagtgcccttccatcgagtacctgtcattaactgaatgttcgattggaaactccaagtgttatgtttgctgctcaagtctaaagtcgttggaagttaagtattgccggattcaagatattcgagttgatcaggccttcaatcttgaatcttttacatttgtctcaccgctggattcaaaatgtgaaaagatgatcttgaataatgccttcaagttgacatatacaaacatttgtgttgattacctccaggaattttctttattgggaagccaccgtgcactagaggccaccatcattacccagtatgtccaattcttcgagttctttgatggttatttgagtgccaacgtttctgttaaagcctatgaggccacaattttagttggggaacttttggaccaagaatggttatcgtcatattcaacacattttcctaggctgatgagctttattagaagatttagctgctgccagaaaataaacctctacaatcaagatgttcaagctctcattgttcctaaaaattataggaagatgacctcctctccaccattgcctaaaacttccactttgcaggtgcggatgccgaatccaccaataatgggaagtagagactatttggaattggacgactccttacaatggattgcaccttttgcacagatagtgatcatgccggtggacgttgaagaagacagaaagaaagtagaccagcgagctagtcctgtaggccatagatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box

Protein Analysis

467

Amino Acids

54.12

Weight (kDa)

8.76

Isoelectric Point (pI)

44.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004540)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g33180 FvH4_4g33210 FvH4_4g33310 FvH4_4g33501
rosa_chinensis	RchiOBHm_Chr4g0442321 RchiOBHm_Chr4g0442821 RchiOBHm_Chr4g0442851 RchiOBHm_Chr4g0442941
rosa_multiflora	Rmu_co8426117.1_g000001 Rmu_sc0000124.1_g000038 Rmu_sc0000124.1_g000050 Rmu_sc0000124.1_g000054 Rmu_sc0007295.1_g000003 Rmu_sc0041664.1_g000001 Rmu_ssc0000204.1_g000015 Rmu_ssc0000204.1_g000016 Rmu_ssc0000204.1_g000050 Rmu_ssc0000204.1_g000053 Rmu_ssc0000204.1_g000057
rosa_roxburghii	Rroxscaffold_5G00383340 Rroxscaffold_5G00383620
rosa_rugosa	Rorug04G0343600
rosa_samantha	Rh4AG392000 Rh4AG393000 Rh4AG393300 Rh4AG396000 Rh4AG397300 Rh4BG406500
rosa_wichuraiana	Rw4G033860 Rw4G033950 Rw4G033970 Rw4G033980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1228
Acc36I	ACCTGC	1 cut(s)	1228
AccB7I	CCANNNNNTGG	2 cut(s)	129, 569
AccI	GTMKAC	1 cut(s)	1371
AciI	CCGC	5 cut(s)	26, 190, 539, 830, 1243
AclI	AACGTT	1 cut(s)	1011
AclWI	GGATC	1 cut(s)	28
AcoI	YGGCCR	2 cut(s)	3, 483
AcsI	RAATTY	3 cut(s)	163, 584, 914
AcuI	CTGAAG	1 cut(s)	598
AcyI	GRCGYC	1 cut(s)	334
AfaI	GTAC	1 cut(s)	683
AfiI	CCNNNNNNNGG	4 cut(s)	129, 569, 1265, 1305
AhlI	ACTAGT	1 cut(s)	509
AjnI	CCWGG	3 cut(s)	105, 568, 909
AjuI	GAANNNNNNNTTGG	2 cut(s)	690, 722
AluBI	AGCT	8 cut(s)	98, 114, 295, 471, 1110, 1128, 1169, 1382
AluI	AGCT	8 cut(s)	98, 114, 295, 471, 1110, 1128, 1169, 1382
Alw21I	GWGCWC	2 cut(s)	297, 943
Alw26I	GTCTC	3 cut(s)	148, 829, 1269
Alw44I	GTGCAC	1 cut(s)	939
AlwI	GGATC	1 cut(s)	28
AoxI	GGCC	7 cut(s)	3, 385, 483, 795, 948, 1032, 1393
ApaLI	GTGCAC	1 cut(s)	939
ApeKI	GCWGC	4 cut(s)	98, 732, 1128, 1131
ApoI	RAATTY	3 cut(s)	163, 584, 914
AspA2I	CCTAGG	1 cut(s)	1097
AspLEI	GCGC	1 cut(s)	456
AspS9I	GGNCC	1 cut(s)	1060
AsuHPI	GGTGA	3 cut(s)	15, 121, 819
AvaII	GGWCC	1 cut(s)	1060
AvrII	CCTAGG	1 cut(s)	1097
BaeGI	GKGCMC	2 cut(s)	671, 943
BalI	TGGCCA	2 cut(s)	5, 485
BanII	GRGCYC	1 cut(s)	297
BbsI	GAAGAC	2 cut(s)	305, 1362
Bbv12I	GWGCWC	2 cut(s)	297, 943
BbvI	GCAGC	4 cut(s)	85, 719, 1115, 1118
BccI	CCATC	4 cut(s)	14, 683, 962, 986
BceAI	ACGGC	1 cut(s)	86
BciT130I	CCWGG	3 cut(s)	107, 570, 911
BclI	TGATCA	2 cut(s)	790, 1332
BcoDI	GTCTC	3 cut(s)	148, 829, 1269
BcuI	ACTAGT	1 cut(s)	509
BfaI	CTAG	6 cut(s)	299, 510, 521, 944, 1098, 1383
BfmI	CTRYAG	2 cut(s)	466, 1389
BfoI	RGCGCY	1 cut(s)	457
BfuAI	ACCTGC	1 cut(s)	1228
BglI	GCCNNNNNGGC	1 cut(s)	1031
BglII	AGATCT	1 cut(s)	643
BisI	GCNGC	4 cut(s)	99, 733, 1129, 1132
BlnI	CCTAGG	1 cut(s)	1097
BlsI	GCNGC	4 cut(s)	100, 734, 1130, 1133
Bme1390I	CCNGG	3 cut(s)	107, 570, 911
Bme18I	GGWCC	1 cut(s)	1060
BmgT120I	GGNCC	1 cut(s)	1060
BmrFI	CCNGG	3 cut(s)	107, 570, 911
BmrI	ACTGGG	1 cut(s)	958
BmsI	GCATC	1 cut(s)	1236
BmuI	ACTGGG	1 cut(s)	958
BpiI	GAAGAC	2 cut(s)	305, 1362
BpmI	CTGGAG	1 cut(s)	893
BpuEI	CTTGAG	1 cut(s)	721
BsaBI	GATNNNNATC	1 cut(s)	1331
BsaHI	GRCGYC	1 cut(s)	334
BsaJI	CCNNGG	3 cut(s)	476, 569, 1097
BsaXI	ACNNNNNCTCC	2 cut(s)	1192, 1222
Bsc4I	CCNNNNNNNGG	4 cut(s)	129, 569, 1265, 1305
Bse118I	RCCGGY	1 cut(s)	1339
Bse1I	ACTGG	1 cut(s)	964
Bse3DI	GCAATG	2 cut(s)	486, 1214
Bse8I	GATNNNNATC	1 cut(s)	1331
BseBI	CCWGG	3 cut(s)	107, 570, 911
BseDI	CCNNGG	3 cut(s)	476, 569, 1097
BseGI	GGATG	2 cut(s)	181, 1251
BseJI	GATNNNNATC	1 cut(s)	1331
BseLI	CCNNNNNNNGG	4 cut(s)	129, 569, 1265, 1305
BseMI	GCAATG	2 cut(s)	486, 1214
BseNI	ACTGG	1 cut(s)	964
BseRI	GAGGAG	2 cut(s)	337, 1195
BseSI	GKGCMC	2 cut(s)	671, 943
BseXI	GCAGC	4 cut(s)	85, 719, 1115, 1118
BsgI	GTGCAG	2 cut(s)	141, 606
BshFI	GGCC	7 cut(s)	5, 387, 485, 797, 950, 1034, 1395
BsiHKAI	GWGCWC	2 cut(s)	297, 943
BsiSI	CCGG	2 cut(s)	769, 1340
BslI	CCNNNNNNNGG	4 cut(s)	129, 569, 1265, 1305
BsmAI	GTCTC	3 cut(s)	148, 829, 1269
BsnI	GGCC	7 cut(s)	5, 387, 485, 797, 950, 1034, 1395
Bsp1286I	GDGCHC	3 cut(s)	297, 671, 943
Bsp143I	GATC	5 cut(s)	20, 643, 790, 855, 1332
BspACI	CCGC	5 cut(s)	26, 190, 539, 830, 1243
BspANI	GGCC	7 cut(s)	5, 387, 485, 797, 950, 1034, 1395
BspMI	ACCTGC	1 cut(s)	1228
BspPI	GGATC	1 cut(s)	28
BsrDI	GCAATG	2 cut(s)	486, 1214
BsrFI	RCCGGY	1 cut(s)	1339
BsrI	ACTGG	1 cut(s)	964
BssAI	RCCGGY	1 cut(s)	1339
BssECI	CCNNGG	3 cut(s)	476, 569, 1097
BssMI	GATC	5 cut(s)	20, 643, 790, 855, 1332
BssNI	GRCGYC	1 cut(s)	334
BssT1I	CCWWGG	2 cut(s)	476, 1097
Bst2UI	CCWGG	3 cut(s)	107, 570, 911
Bst4CI	ACNGT	3 cut(s)	212, 627, 938
BstACI	GRCGYC	1 cut(s)	334
BstAPI	GCANNNNNTGC	1 cut(s)	1319
BstC8I	GCNNGC	2 cut(s)	473, 1380
BstDEI	CTNAG	3 cut(s)	308, 450, 551
BstF5I	GGATG	2 cut(s)	181, 1251
BstH2I	RGCGCY	1 cut(s)	457
BstHHI	GCGC	1 cut(s)	456
BstKTI	GATC	5 cut(s)	23, 646, 793, 858, 1335
BstMAI	GTCTC	3 cut(s)	148, 829, 1269
BstMBI	GATC	5 cut(s)	20, 643, 790, 855, 1332
BstMWI	GCNNNNNNNGC	3 cut(s)	947, 1031, 1319
BstNI	CCWGG	3 cut(s)	107, 570, 911
BstNSI	RCATGY	1 cut(s)	378
BstSCI	CCNGG	3 cut(s)	105, 568, 909
BstSFI	CTRYAG	2 cut(s)	466, 1389
BstSLI	GKGCMC	2 cut(s)	671, 943
BstV1I	GCAGC	4 cut(s)	85, 719, 1115, 1118
BstV2I	GAAGAC	2 cut(s)	305, 1362
BstX2I	RGATCY	1 cut(s)	643
BstYI	RGATCY	1 cut(s)	643
BsuRI	GGCC	7 cut(s)	5, 387, 485, 797, 950, 1034, 1395
BtsCI	GGATG	2 cut(s)	181, 1251
BveI	ACCTGC	1 cut(s)	1228
Cac8I	GCNNGC	2 cut(s)	473, 1380
CfoI	GCGC	1 cut(s)	456
Cfr10I	RCCGGY	1 cut(s)	1339
Cfr13I	GGNCC	1 cut(s)	1060
CseI	GACGC	1 cut(s)	323
Csp6I	GTAC	1 cut(s)	682
CviAII	CATG	4 cut(s)	31, 319, 375, 1336
CviQI	GTAC	1 cut(s)	682
DdeI	CTNAG	3 cut(s)	308, 450, 551
DpnI	GATC	5 cut(s)	22, 645, 792, 857, 1334
DpnII	GATC	5 cut(s)	20, 643, 790, 855, 1332
EaeI	YGGCCR	2 cut(s)	3, 483
Ecl136II	GAGCTC	1 cut(s)	295
Eco130I	CCWWGG	2 cut(s)	476, 1097
Eco147I	AGGCCT	2 cut(s)	387, 797
Eco24I	GRGCYC	1 cut(s)	297
Eco32I	GATATC	1 cut(s)	403
Eco47I	GGWCC	1 cut(s)	1060
Eco53kI	GAGCTC	1 cut(s)	295
Eco57I	CTGAAG	1 cut(s)	598
EcoICRI	GAGCTC	1 cut(s)	295
EcoRII	CCWGG	3 cut(s)	105, 568, 909
EcoRV	GATATC	1 cut(s)	403
EcoT14I	CCWWGG	2 cut(s)	476, 1097
EcoT22I	ATGCAT	1 cut(s)	376
EcoT38I	GRGCYC	1 cut(s)	297
ErhI	CCWWGG	2 cut(s)	476, 1097
FaeI	CATG	4 cut(s)	34, 322, 378, 1339
FalI	AAGNNNNNCTT	2 cut(s)	842, 874
FatI	CATG	4 cut(s)	30, 318, 374, 1335
FauI	CCCGC	1 cut(s)	546
FbaI	TGATCA	2 cut(s)	790, 1332
FblI	GTMKAC	1 cut(s)	1371
Fnu4HI	GCNGC	4 cut(s)	99, 733, 1129, 1132
FokI	GGATG	2 cut(s)	188, 1258
FriOI	GRGCYC	1 cut(s)	297
Fsp4HI	GCNGC	4 cut(s)	99, 733, 1129, 1132
FspBI	CTAG	6 cut(s)	299, 510, 521, 944, 1098, 1383
GlaI	GCGC	1 cut(s)	455
GluI	GCNGC	4 cut(s)	99, 733, 1129, 1132
GsuI	CTGGAG	1 cut(s)	893
HaeII	RGCGCY	1 cut(s)	457
HaeIII	GGCC	7 cut(s)	5, 387, 485, 797, 950, 1034, 1395
HapII	CCGG	2 cut(s)	769, 1340
HgaI	GACGC	1 cut(s)	323
HhaI	GCGC	1 cut(s)	456
Hin1I	GRCGYC	1 cut(s)	334
Hin1II	CATG	4 cut(s)	34, 322, 378, 1339
Hin6I	GCGC	1 cut(s)	454
HinP1I	GCGC	1 cut(s)	454
HincII	GTYRAC	2 cut(s)	424, 879
HindII	GTYRAC	2 cut(s)	424, 879
HinfI	GANTC	9 cut(s)	341, 524, 534, 557, 772, 809, 836, 1252, 1295
HpaII	CCGG	2 cut(s)	769, 1340
HphI	GGTGA	3 cut(s)	15, 121, 819
Hpy166II	GTNNAC	5 cut(s)	424, 879, 941, 1345, 1372
Hpy188I	TCNGA	2 cut(s)	381, 617
Hpy188III	TCNNGA	7 cut(s)	44, 272, 338, 776, 806, 859, 1157
Hpy8I	GTNNAC	5 cut(s)	424, 879, 941, 1345, 1372
Hpy99I	CGWCG	1 cut(s)	339
HpyAV	CCTTC	8 cut(s)	50, 86, 95, 247, 622, 681, 808, 880
HpyCH4III	ACNGT	3 cut(s)	212, 627, 938
HpyCH4IV	ACGT	3 cut(s)	543, 1011, 1347
HpyCH4V	TGCA	8 cut(s)	158, 374, 497, 623, 941, 1237, 1313, 1322
HpyF10VI	GCNNNNNNNGC	3 cut(s)	947, 1031, 1319
HpyF3I	CTNAG	3 cut(s)	308, 450, 551
HpySE526I	ACGT	3 cut(s)	543, 1011, 1347
Hsp92I	GRCGYC	1 cut(s)	334
Hsp92II	CATG	4 cut(s)	34, 322, 378, 1339
HspAI	GCGC	1 cut(s)	454
Ksp22I	TGATCA	2 cut(s)	790, 1332
Kzo9I	GATC	5 cut(s)	20, 643, 790, 855, 1332
LmnI	GCTCC	1 cut(s)	300
Lsp1109I	GCAGC	4 cut(s)	85, 719, 1115, 1118
LweI	GCATC	1 cut(s)	1236
MaeI	CTAG	6 cut(s)	299, 510, 521, 944, 1098, 1383
MaeII	ACGT	3 cut(s)	543, 1011, 1347
MaeIII	GTNAC	3 cut(s)	206, 212, 445
MalI	GATC	5 cut(s)	22, 645, 792, 857, 1334
MboI	GATC	5 cut(s)	20, 643, 790, 855, 1332
MboII	GAAGA	6 cut(s)	305, 970, 1131, 1207, 1364, 1367
MflI	RGATCY	1 cut(s)	643
MhlI	GDGCHC	3 cut(s)	297, 671, 943
MlsI	TGGCCA	2 cut(s)	5, 485
MluCI	AATT	7 cut(s)	163, 584, 914, 974, 1038, 1186, 1286
MluNI	TGGCCA	2 cut(s)	5, 485
MlyI	GAGTC	2 cut(s)	533, 1289
MmeI	TCCRAC	3 cut(s)	378, 587, 732
Mox20I	TGGCCA	2 cut(s)	5, 485
Mph1103I	ATGCAT	1 cut(s)	376
MscI	TGGCCA	2 cut(s)	5, 485
MseI	TTAA	4 cut(s)	506, 692, 759, 1020
MslI	CAYNNNNRTG	1 cut(s)	1340
Msp20I	TGGCCA	2 cut(s)	5, 485
MspA1I	CMGCKG	1 cut(s)	832
MspI	CCGG	2 cut(s)	769, 1340
MspR9I	CCNGG	3 cut(s)	107, 570, 911
MvaI	CCWGG	3 cut(s)	107, 570, 911
MwoI	GCNNNNNNNGC	3 cut(s)	947, 1031, 1319
NdeII	GATC	5 cut(s)	20, 643, 790, 855, 1332
NlaIII	CATG	4 cut(s)	34, 322, 378, 1339
NmuCI	GTSAC	2 cut(s)	212, 445
NsiI	ATGCAT	1 cut(s)	376
NspI	RCATGY	1 cut(s)	378
PaqCI	CACCTGC	1 cut(s)	1228
PceI	AGGCCT	2 cut(s)	387, 797
PfeI	GAWTC	7 cut(s)	341, 534, 557, 772, 809, 836, 1252
PflMI	CCANNNNNTGG	2 cut(s)	129, 569
PfoI	TCCNGGA	1 cut(s)	909
PkrI	GCNGC	4 cut(s)	100, 734, 1130, 1133
PleI	GAGTC	2 cut(s)	532, 1289
PpsI	GAGTC	2 cut(s)	532, 1289
Psp124BI	GAGCTC	1 cut(s)	297
Psp1406I	AACGTT	1 cut(s)	1011
Psp6I	CCWGG	3 cut(s)	105, 568, 909
PspGI	CCWGG	3 cut(s)	105, 568, 909
PspPI	GGNCC	1 cut(s)	1060
PsuI	RGATCY	1 cut(s)	643
RsaI	GTAC	1 cut(s)	683
RsaNI	GTAC	1 cut(s)	682
RseI	CAYNNNNRTG	1 cut(s)	1340
SacI	GAGCTC	1 cut(s)	297
SaqAI	TTAA	4 cut(s)	506, 692, 759, 1020
SatI	GCNGC	4 cut(s)	99, 733, 1129, 1132
Sau3AI	GATC	5 cut(s)	20, 643, 790, 855, 1332
Sau96I	GGNCC	1 cut(s)	1060
SchI	GAGTC	2 cut(s)	533, 1289
ScrFI	CCNGG	3 cut(s)	107, 570, 911
SduI	GDGCHC	3 cut(s)	297, 671, 943
SfaNI	GCATC	1 cut(s)	1236
SfcI	CTRYAG	2 cut(s)	466, 1389
SinI	GGWCC	1 cut(s)	1060
SmiMI	CAYNNNNRTG	1 cut(s)	1340
SmlI	CTYRAG	1 cut(s)	736
SmoI	CTYRAG	1 cut(s)	736
SpeI	ACTAGT	1 cut(s)	509
Sse9I	AATT	7 cut(s)	163, 584, 914, 974, 1038, 1186, 1286
SseBI	AGGCCT	2 cut(s)	387, 797
SsiI	CCGC	5 cut(s)	26, 190, 539, 830, 1243
SspMI	CTAG	6 cut(s)	299, 510, 521, 944, 1098, 1383
SstI	GAGCTC	1 cut(s)	297
StuI	AGGCCT	2 cut(s)	387, 797
StyD4I	CCNGG	3 cut(s)	105, 568, 909
StyI	CCWWGG	2 cut(s)	476, 1097
TaaI	ACNGT	3 cut(s)	212, 627, 938
TaiI	ACGT	3 cut(s)	546, 1014, 1350
TaqI	TCGA	6 cut(s)	337, 547, 678, 704, 784, 981
TasI	AATT	7 cut(s)	163, 584, 914, 974, 1038, 1186, 1286
TfiI	GAWTC	7 cut(s)	341, 534, 557, 772, 809, 836, 1252
Tru1I	TTAA	4 cut(s)	506, 692, 759, 1020
Tru9I	TTAA	4 cut(s)	506, 692, 759, 1020
TseFI	GTSAC	2 cut(s)	212, 445
TseI	GCWGC	4 cut(s)	98, 732, 1128, 1131
Tsp45I	GTSAC	2 cut(s)	212, 445
TspDTI	ATGAA	1 cut(s)	229
TspGWI	ACGGA	1 cut(s)	582
Van91I	CCANNNNNTGG	2 cut(s)	129, 569
VneI	GTGCAC	1 cut(s)	939
VpaK11BI	GGWCC	1 cut(s)	1060
XapI	RAATTY	3 cut(s)	163, 584, 914
XceI	RCATGY	1 cut(s)	378
XcmI	CCANNNNNNNNNTGG	1 cut(s)	13
XmaJI	CCTAGG	1 cut(s)	1097
XmiI	GTMKAC	1 cut(s)	1371
XspI	CTAG	6 cut(s)	299, 510, 521, 944, 1098, 1383
Zsp2I	ATGCAT	1 cut(s)	376

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.