Rroxscaffold_5G00383620

F-box FBD LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0004540
Physical Location & Seq
Forward (+)
63219945 .. 63221843
1899 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00383620.1

Sequence Viewer

Length: 591 bp
ATGGCCGTCAACGTATTGGGATCATCTCACAAAATGCCTCACCTTCACGACTTACCGGACCTTGTTATTGACAAAATCCTTGGGTTTCTTCCTACTAAAGCTGCCGTCCAGGCTACCTTTCTTTCCAAGCAATCTCCAGTTTCTTCAGCGTCTGCACTAAATTTCGACGAGACTGATGATTTTCGACGTCACAACCCCAATGGTCCCTTTGCCAACCTACTCCAACACAAGAAGTTCATCAACTTCTTGAAAGGGTATCTAGAATATCATAAGACATATGAGAAGAAAGAGGTCCTAGATTCACTAAGGCTTCACATGCACTTTTATTTCTGTCGAGATGCTACCGTCATTGATAGGTGGCTGGAACGTGCAATTAATAGAGGTCTCAAAGAATTAGATATTAGCCCACGACAAATAAGTATTATCCATGGAGAAATAGTGGTGGAAGCTGAAAAACTGTATCGCTTACCTTGGGTATCCTTTGCTAATAATGCACAGTCTCTTACTAGTCTAAATCTGGAGTATGTTAGGATGGCAGACATCCAAAGTGCAAAACTTCAAAGGGATGAGAAGTATCTTCTTCCTCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

196

Amino Acids

22.63

Weight (kDa)

8.58

Isoelectric Point (pI)

51.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 190
AclWI GGATC 1 cut(s) 28
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 160
AcuI CTGAAG 1 cut(s) 129
AcyI GRCGYC 1 cut(s) 187
AgsI TTSAA 2 cut(s) 250, 560
AhlI ACTAGT 1 cut(s) 506
AjnI CCWGG 1 cut(s) 108
AluBI AGCT 2 cut(s) 101, 449
AluI AGCT 2 cut(s) 101, 449
Alw26I GTCTC 3 cut(s) 164, 389, 504
AlwI GGATC 1 cut(s) 28
AlwNI CAGNNNCTG 1 cut(s) 152
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 1 cut(s) 101
ApoI RAATTY 1 cut(s) 160
AseI ATTAAT 1 cut(s) 375
AspS9I GGNCC 3 cut(s) 58, 203, 292
AsuHPI GGTGA 1 cut(s) 32
AvaII GGWCC 3 cut(s) 58, 203, 292
BbvI GCAGC 1 cut(s) 88
BccI CCATC 1 cut(s) 526
BceAI ACGGC 1 cut(s) 89
BciT130I CCWGG 1 cut(s) 110
BciVI GTATCC 1 cut(s) 487
BcoDI GTCTC 3 cut(s) 164, 389, 504
BcuI ACTAGT 1 cut(s) 506
BfaI CTAG 3 cut(s) 260, 296, 507
BfuI GTATCC 1 cut(s) 487
BglI GCCNNNNNGGC 1 cut(s) 110
BisI GCNGC 1 cut(s) 102
BlsI GCNGC 1 cut(s) 103
Bme1390I CCNGG 1 cut(s) 110
Bme18I GGWCC 3 cut(s) 58, 203, 292
BmgT120I GGNCC 3 cut(s) 58, 203, 292
BmiI GGNNCC 1 cut(s) 205
BmrFI CCNGG 1 cut(s) 110
BmsI GCATC 1 cut(s) 328
BpmI CTGGAG 2 cut(s) 120, 539
BsaHI GRCGYC 1 cut(s) 187
BsaI GGTCTC 1 cut(s) 389
BsaJI CCNNGG 3 cut(s) 79, 427, 470
BsaWI WCCGGW 1 cut(s) 55
BsaXI ACNNNNNCTCC 2 cut(s) 423, 453
Bse1I ACTGG 1 cut(s) 137
BseBI CCWGG 1 cut(s) 110
BseDI CCNNGG 3 cut(s) 79, 427, 470
BseGI GGATG 3 cut(s) 537, 540, 571
BseNI ACTGG 1 cut(s) 137
BseXI GCAGC 1 cut(s) 88
BsgI GTGCAG 1 cut(s) 138
BshFI GGCC 1 cut(s) 5
BsiSI CCGG 1 cut(s) 56
BslFI GGGAC 1 cut(s) 189
BsmAI GTCTC 3 cut(s) 164, 389, 504
BsmFI GGGAC 1 cut(s) 189
BsnI GGCC 1 cut(s) 5
Bso31I GGTCTC 1 cut(s) 389
Bsp143I GATC 1 cut(s) 20
Bsp19I CCATGG 1 cut(s) 427
BspANI GGCC 1 cut(s) 5
BspLI GGNNCC 1 cut(s) 205
BspPI GGATC 1 cut(s) 28
BspTNI GGTCTC 1 cut(s) 389
BsrI ACTGG 1 cut(s) 137
BssECI CCNNGG 3 cut(s) 79, 427, 470
BssMI GATC 1 cut(s) 20
BssNI GRCGYC 1 cut(s) 187
BssT1I CCWWGG 3 cut(s) 79, 427, 470
Bst2UI CCWGG 1 cut(s) 110
Bst4CI ACNGT 3 cut(s) 346, 459, 498
BstACI GRCGYC 1 cut(s) 187
BstDEI CTNAG 1 cut(s) 305
BstDSI CCRYGG 1 cut(s) 427
BstF5I GGATG 3 cut(s) 537, 540, 571
BstKTI GATC 1 cut(s) 23
BstMAI GTCTC 3 cut(s) 164, 389, 504
BstMBI GATC 1 cut(s) 20
BstMWI GCNNNNNNNGC 3 cut(s) 110, 316, 491
BstNI CCWGG 1 cut(s) 110
BstNSI RCATGY 1 cut(s) 319
BstSCI CCNGG 1 cut(s) 108
BstV1I GCAGC 1 cut(s) 88
BsuI GTATCC 1 cut(s) 487
BsuRI GGCC 1 cut(s) 5
BtgI CCRYGG 1 cut(s) 427
BtsCI GGATG 3 cut(s) 537, 540, 571
CaiI CAGNNNCTG 1 cut(s) 152
Cfr13I GGNCC 3 cut(s) 58, 203, 292
CseI GACGC 1 cut(s) 138
CviAII CATG 2 cut(s) 316, 428
CviJI RGCY 7 cut(s) 5, 101, 113, 310, 361, 405, 449
CviKI_1 RGCY 7 cut(s) 5, 101, 113, 310, 361, 405, 449
DdeI CTNAG 1 cut(s) 305
DpnI GATC 1 cut(s) 22
DpnII GATC 1 cut(s) 20
EaeI YGGCCR 1 cut(s) 3
Eco130I CCWWGG 3 cut(s) 79, 427, 470
Eco31I GGTCTC 1 cut(s) 389
Eco47I GGWCC 3 cut(s) 58, 203, 292
Eco57I CTGAAG 1 cut(s) 129
EcoO109I RGGNCCY 1 cut(s) 292
EcoRII CCWGG 1 cut(s) 108
EcoT14I CCWWGG 3 cut(s) 79, 427, 470
ErhI CCWWGG 3 cut(s) 79, 427, 470
FaeI CATG 2 cut(s) 319, 431
FaiI YATR 6 cut(s) 270, 277, 279, 317, 429, 525
FaqI GGGAC 1 cut(s) 189
FatI CATG 2 cut(s) 315, 427
FauNDI CATATG 1 cut(s) 277
Fnu4HI GCNGC 1 cut(s) 102
FokI GGATG 3 cut(s) 527, 544, 578
Fsp4HI GCNGC 1 cut(s) 102
FspBI CTAG 3 cut(s) 260, 296, 507
GluI GCNGC 1 cut(s) 102
GsuI CTGGAG 2 cut(s) 120, 539
HaeIII GGCC 1 cut(s) 5
HapII CCGG 1 cut(s) 56
HgaI GACGC 1 cut(s) 138
Hin1I GRCGYC 1 cut(s) 187
Hin1II CATG 2 cut(s) 319, 431
HincII GTYRAC 1 cut(s) 10
HindII GTYRAC 1 cut(s) 10
HinfI GANTC 1 cut(s) 299
HpaII CCGG 1 cut(s) 56
HphI GGTGA 1 cut(s) 32
Hpy166II GTNNAC 1 cut(s) 10
Hpy188III TCNNGA 5 cut(s) 47, 247, 260, 335, 518
Hpy8I GTNNAC 1 cut(s) 10
Hpy99I CGWCG 2 cut(s) 170, 189
HpyAV CCTTC 1 cut(s) 53
HpyCH4III ACNGT 3 cut(s) 346, 459, 498
HpyCH4IV ACGT 3 cut(s) 12, 187, 367
HpyCH4V TGCA 5 cut(s) 155, 319, 371, 494, 551
HpyF10VI GCNNNNNNNGC 3 cut(s) 110, 316, 491
HpyF3I CTNAG 1 cut(s) 305
HpySE526I ACGT 3 cut(s) 12, 187, 367
Hsp92I GRCGYC 1 cut(s) 187
Hsp92II CATG 2 cut(s) 319, 431
Kzo9I GATC 1 cut(s) 20
LpnPI CCDG 6 cut(s) 69, 95, 122, 150, 347, 503
Lsp1109I GCAGC 1 cut(s) 88
LweI GCATC 1 cut(s) 328
MaeI CTAG 3 cut(s) 260, 296, 507
MaeII ACGT 3 cut(s) 12, 187, 367
MaeIII GTNAC 1 cut(s) 188
MalI GATC 1 cut(s) 22
MboI GATC 1 cut(s) 20
MboII GAAGA 5 cut(s) 80, 135, 295, 569, 572
MluCI AATT 3 cut(s) 160, 372, 392
MmeI TCCRAC 1 cut(s) 247
MnlI CCTC 3 cut(s) 48, 283, 374
MseI TTAA 2 cut(s) 375, 589
MspI CCGG 1 cut(s) 56
MspR9I CCNGG 1 cut(s) 110
MvaI CCWGG 1 cut(s) 110
MwoI GCNNNNNNNGC 3 cut(s) 110, 316, 491
NcoI CCATGG 1 cut(s) 427
NdeI CATATG 1 cut(s) 277
NdeII GATC 1 cut(s) 20
NlaIII CATG 2 cut(s) 319, 431
NlaIV GGNNCC 1 cut(s) 205
NmuCI GTSAC 1 cut(s) 188
NspI RCATGY 1 cut(s) 319
PfeI GAWTC 1 cut(s) 299
PkrI GCNGC 1 cut(s) 103
PpuMI RGGWCCY 1 cut(s) 292
PshBI ATTAAT 1 cut(s) 375
Psp5II RGGWCCY 1 cut(s) 292
Psp6I CCWGG 1 cut(s) 108
PspGI CCWGG 1 cut(s) 108
PspN4I GGNNCC 1 cut(s) 205
PspPI GGNCC 3 cut(s) 58, 203, 292
PspPPI RGGWCCY 1 cut(s) 292
PstNI CAGNNNCTG 1 cut(s) 152
SaqAI TTAA 2 cut(s) 375, 589
SatI GCNGC 1 cut(s) 102
Sau3AI GATC 1 cut(s) 20
Sau96I GGNCC 3 cut(s) 58, 203, 292
ScrFI CCNGG 1 cut(s) 110
SfaNI GCATC 1 cut(s) 328
SinI GGWCC 3 cut(s) 58, 203, 292
SpeI ACTAGT 1 cut(s) 506
Sse9I AATT 3 cut(s) 160, 372, 392
SspMI CTAG 3 cut(s) 260, 296, 507
StyD4I CCNGG 1 cut(s) 108
StyI CCWWGG 3 cut(s) 79, 427, 470
TaaI ACNGT 3 cut(s) 346, 459, 498
TaiI ACGT 3 cut(s) 15, 190, 370
TaqI TCGA 3 cut(s) 165, 184, 334
TasI AATT 3 cut(s) 160, 372, 392
TfiI GAWTC 1 cut(s) 299
Tru1I TTAA 2 cut(s) 375, 589
Tru9I TTAA 2 cut(s) 375, 589
TseFI GTSAC 1 cut(s) 188
TseI GCWGC 1 cut(s) 101
Tsp45I GTSAC 1 cut(s) 188
TspDTI ATGAA 1 cut(s) 226
VpaK11BI GGWCC 3 cut(s) 58, 203, 292
VspI ATTAAT 1 cut(s) 375
XapI RAATTY 1 cut(s) 160
XbaI TCTAGA 1 cut(s) 259
XceI RCATGY 1 cut(s) 319
XspI CTAG 3 cut(s) 260, 296, 507
ZraI GACGTC 1 cut(s) 188
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.