Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000204.1

Orthogroup ID

OG0004540

Physical Location & Seq

Genomic Coordinates Reverse (-)

58533 .. 59717

Gene Structure 1185 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000204.1_g000015.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1185 bp

atgagcacccttattggagggtgtcctttggccaattttctagtagtgacatttggagacttcacgtgtcgtgtttcaagttcaagtctcgagttcctgaaactgaagttttgctttcagcttcaggtgcttcaagttcatgatgagactaacaatcttgaatcttttacttttttctcggagtcagcaccatattcactatgtgaaaatgtgatcatgaataaatccttcaagttgaaaaatgtcaacatttttacgggaagttacaacctctacgactcctaccatttatcttgggtgacattatttgctaatgcaaaattcctaactagtctaaatctggaggacacgagaattgcaaacattagtgcaaacgttcaaagtgacgagcgccttcttccctctttgaaaaccttgtccttcgcaatttcatggtttgctgacgaagctctcccctccttattattggagtgcccttccatcgagtatttgtcaataactgaatgttgttttgaaaacttcaagtgtcaagtttcaagtttaaatctcaagtccttggaagttatggattgcgaacggctacaagttcttcaagttgatgaagctaagaaccttgaatcttttacttttgcttctccgcttccgtcacatgaaaaggtgatcttgaataataccttcaacttaaaaaatatcaaaattggtgttgacgacctagggcagttttctttaaacggatgtcatcgtgcactaaaagccacaatcaatgtccaaaatctccatctttttgattttcttggaactttgaaggctgaattttctgttaaaggatgtcagagggccaagattgcagttcgggaacttttgttcaaaaattggttcgtgcattactcttcacattttcctacattgattggttgtctcaaagaatttgggtgctgcaagaaaatatccctctataatcaagatctgaaggctctcataattcctaatcattttaggaaggaattctcttcaccgttgcctaaaatttgcactctggaggtgatgatgccaagtccaccaacaaaagcgagtagagattatttcgacttgatggaatccttgcattggattgcaccttctgcaaaagtgaaaatctgcaaaagtgaaacacaccgttttgatgcattattagaagaacattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box

Protein Analysis

394

Amino Acids

44.77

Weight (kDa)

6.42

Isoelectric Point (pI)

38.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004540)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g33180 FvH4_4g33210 FvH4_4g33310 FvH4_4g33501
rosa_chinensis	RchiOBHm_Chr4g0442321 RchiOBHm_Chr4g0442821 RchiOBHm_Chr4g0442851 RchiOBHm_Chr4g0442941
rosa_multiflora	Rmu_co8426117.1_g000001 Rmu_sc0000124.1_g000038 Rmu_sc0000124.1_g000050 Rmu_sc0000124.1_g000054 Rmu_sc0007295.1_g000003 Rmu_sc0041664.1_g000001 Rmu_ssc0000204.1_g000015 Rmu_ssc0000204.1_g000016 Rmu_ssc0000204.1_g000050 Rmu_ssc0000204.1_g000053 Rmu_ssc0000204.1_g000057
rosa_roxburghii	Rroxscaffold_5G00383340 Rroxscaffold_5G00383620
rosa_rugosa	Rorug04G0343600
rosa_samantha	Rh4AG392000 Rh4AG393000 Rh4AG393300 Rh4AG396000 Rh4AG397300 Rh4BG406500
rosa_wichuraiana	Rw4G033860 Rw4G033950 Rw4G033970 Rw4G033980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	638
AclI	AACGTT	1 cut(s)	375
AcoI	YGGCCR	1 cut(s)	30
AcsI	RAATTY	5 cut(s)	320, 812, 926, 1004, 1026
AcuI	CTGAAG	3 cut(s)	107, 125, 989
AcvI	CACGTG	1 cut(s)	66
AdeI	CACNNNGTG	1 cut(s)	203
AfiI	CCNNNNNNNGG	1 cut(s)	1107
AflIII	ACRYGT	1 cut(s)	65
AhlI	ACTAGT	1 cut(s)	329
AloI	GAACNNNNNNTCC	2 cut(s)	848, 880
AluBI	AGCT	3 cut(s)	121, 449, 605
AluI	AGCT	3 cut(s)	121, 449, 605
Alw21I	GWGCWC	2 cut(s)	8, 748
Alw26I	GTCTC	4 cut(s)	51, 92, 140, 923
Alw44I	GTGCAC	1 cut(s)	744
Ama87I	CYCGRG	1 cut(s)	89
AoxI	GGCC	2 cut(s)	30, 837
ApaLI	GTGCAC	1 cut(s)	744
ApeKI	GCWGC	1 cut(s)	936
ApoI	RAATTY	5 cut(s)	320, 812, 926, 1004, 1026
Asp700I	GAANNNNTTC	1 cut(s)	1004
AspA2I	CCTAGG	1 cut(s)	712
AspLEI	GCGC	1 cut(s)	393
AspS9I	GGNCC	1 cut(s)	837
AsuHPI	GGTGA	4 cut(s)	310, 670, 1005, 1054
AvaI	CYCGRG	1 cut(s)	89
AvrII	CCTAGG	1 cut(s)	712
BaeGI	GKGCMC	2 cut(s)	476, 748
BalI	TGGCCA	1 cut(s)	32
BauI	CACGAG	1 cut(s)	349
BbrPI	CACGTG	1 cut(s)	66
Bbv12I	GWGCWC	2 cut(s)	8, 748
BbvI	GCAGC	1 cut(s)	923
BccI	CCATC	3 cut(s)	488, 786, 1087
BceAI	ACGGC	1 cut(s)	593
BclI	TGATCA	1 cut(s)	213
BcoDI	GTCTC	4 cut(s)	51, 92, 140, 923
BcuI	ACTAGT	1 cut(s)	329
BfaI	CTAG	3 cut(s)	41, 330, 713
BfoI	RGCGCY	1 cut(s)	394
BglII	AGATCT	1 cut(s)	964
BisI	GCNGC	1 cut(s)	937
BlnI	CCTAGG	1 cut(s)	712
BlsI	GCNGC	1 cut(s)	938
BmeT110I	CYCGRG	1 cut(s)	89
BmgT120I	GGNCC	1 cut(s)	837
BmsI	GCATC	2 cut(s)	1038, 1153
BpmI	CTGGAG	2 cut(s)	362, 1058
BpuEI	CTTGAG	1 cut(s)	533
BsaAI	YACGTR	1 cut(s)	66
BsaJI	CCNNGG	2 cut(s)	555, 712
Bsc4I	CCNNNNNNNGG	1 cut(s)	1107
BseDI	CCNNGG	2 cut(s)	555, 712
BseGI	GGATG	2 cut(s)	740, 833
BseLI	CCNNNNNNNGG	1 cut(s)	1107
BseSI	GKGCMC	2 cut(s)	476, 748
BseXI	GCAGC	1 cut(s)	923
BshFI	GGCC	2 cut(s)	32, 839
BsiHKAI	GWGCWC	2 cut(s)	8, 748
BsiHKCI	CYCGRG	1 cut(s)	89
BslI	CCNNNNNNNGG	1 cut(s)	1107
BsmAI	GTCTC	4 cut(s)	51, 92, 140, 923
BsnI	GGCC	2 cut(s)	32, 839
BsoBI	CYCGRG	1 cut(s)	89
Bsp1286I	GDGCHC	3 cut(s)	8, 476, 748
Bsp143I	GATC	3 cut(s)	213, 660, 964
BspACI	CCGC	1 cut(s)	638
BspANI	GGCC	2 cut(s)	32, 839
BspHI	TCATGA	2 cut(s)	139, 216
BssECI	CCNNGG	2 cut(s)	555, 712
BssMI	GATC	3 cut(s)	213, 660, 964
BssSI	CACGAG	1 cut(s)	349
BssT1I	CCWWGG	2 cut(s)	555, 712
Bst2BI	CACGAG	1 cut(s)	349
Bst4CI	ACNGT	2 cut(s)	1017, 1157
Bst6I	CTCTTC	2 cut(s)	895, 1015
BstAPI	GCANNNNNTGC	1 cut(s)	1121
BstBAI	YACGTR	1 cut(s)	66
BstDEI	CTNAG	1 cut(s)	606
BstF5I	GGATG	2 cut(s)	740, 833
BstH2I	RGCGCY	1 cut(s)	394
BstHHI	GCGC	1 cut(s)	393
BstKTI	GATC	3 cut(s)	216, 663, 967
BstMAI	GTCTC	4 cut(s)	51, 92, 140, 923
BstMBI	GATC	3 cut(s)	213, 660, 964
BstMWI	GCNNNNNNNGC	5 cut(s)	127, 446, 752, 845, 1121
BstSLI	GKGCMC	2 cut(s)	476, 748
BstV1I	GCAGC	1 cut(s)	923
BstX2I	RGATCY	1 cut(s)	964
BstYI	RGATCY	1 cut(s)	964
BsuRI	GGCC	2 cut(s)	32, 839
BtsCI	GGATG	2 cut(s)	740, 833
CciI	TCATGA	2 cut(s)	139, 216
CfoI	GCGC	1 cut(s)	393
Cfr13I	GGNCC	1 cut(s)	837
CviAII	CATG	4 cut(s)	140, 217, 432, 650
CviJI	RGCY	9 cut(s)	32, 121, 449, 580, 605, 755, 809, 839, 974
CviKI_1	RGCY	9 cut(s)	32, 121, 449, 580, 605, 755, 809, 839, 974
DdeI	CTNAG	1 cut(s)	606
DpnI	GATC	3 cut(s)	215, 662, 966
DpnII	GATC	3 cut(s)	213, 660, 964
DraI	TTTAAA	2 cut(s)	543, 729
DraIII	CACNNNGTG	1 cut(s)	203
EaeI	YGGCCR	1 cut(s)	30
Eam1104I	CTCTTC	2 cut(s)	895, 1015
EarI	CTCTTC	2 cut(s)	895, 1015
Eco130I	CCWWGG	2 cut(s)	555, 712
Eco57I	CTGAAG	3 cut(s)	107, 125, 989
Eco72I	CACGTG	1 cut(s)	66
Eco88I	CYCGRG	1 cut(s)	89
EcoRI	GAATTC	1 cut(s)	1004
EcoT14I	CCWWGG	2 cut(s)	555, 712
EcoT22I	ATGCAT	1 cut(s)	1168
ErhI	CCWWGG	2 cut(s)	555, 712
FaeI	CATG	4 cut(s)	143, 220, 435, 653
FaiI	YATR	9 cut(s)	141, 193, 202, 218, 433, 566, 651, 957, 980
FalI	AAGNNNNNCTT	4 cut(s)	98, 130, 647, 679
FatI	CATG	4 cut(s)	139, 216, 431, 649
FbaI	TGATCA	1 cut(s)	213
Fnu4HI	GCNGC	1 cut(s)	937
FokI	GGATG	2 cut(s)	747, 840
Fsp4HI	GCNGC	1 cut(s)	937
FspBI	CTAG	3 cut(s)	41, 330, 713
GlaI	GCGC	1 cut(s)	392
GluI	GCNGC	1 cut(s)	937
GsuI	CTGGAG	2 cut(s)	362, 1058
HaeII	RGCGCY	1 cut(s)	394
HaeIII	GGCC	2 cut(s)	32, 839
HhaI	GCGC	1 cut(s)	393
Hin1II	CATG	4 cut(s)	143, 220, 435, 653
Hin6I	GCGC	1 cut(s)	391
HinP1I	GCGC	1 cut(s)	391
HincII	GTYRAC	2 cut(s)	247, 706
HindII	GTYRAC	2 cut(s)	247, 706
HinfI	GANTC	5 cut(s)	161, 182, 278, 617, 1097
HphI	GGTGA	4 cut(s)	310, 670, 1005, 1054
Hpy166II	GTNNAC	4 cut(s)	247, 706, 746, 1058
Hpy188I	TCNGA	3 cut(s)	181, 834, 969
Hpy8I	GTNNAC	4 cut(s)	247, 706, 746, 1058
HpyAV	CCTTC	9 cut(s)	238, 404, 430, 486, 685, 799, 964, 994, 1128
HpyCH4III	ACNGT	2 cut(s)	1017, 1157
HpyCH4IV	ACGT	2 cut(s)	65, 375
HpyF10VI	GCNNNNNNNGC	5 cut(s)	127, 446, 752, 845, 1121
HpyF3I	CTNAG	1 cut(s)	606
HpySE526I	ACGT	2 cut(s)	65, 375
Hsp92II	CATG	4 cut(s)	143, 220, 435, 653
HspAI	GCGC	1 cut(s)	391
Ksp22I	TGATCA	1 cut(s)	213
Kzo9I	GATC	3 cut(s)	213, 660, 964
LpnPI	CCDG	4 cut(s)	110, 110, 326, 1022
Lsp1109I	GCAGC	1 cut(s)	923
LweI	GCATC	2 cut(s)	1038, 1153
MaeI	CTAG	3 cut(s)	41, 330, 713
MaeII	ACGT	2 cut(s)	65, 375
MaeIII	GTNAC	5 cut(s)	46, 263, 298, 383, 645
MalI	GATC	3 cut(s)	215, 662, 966
MboI	GATC	3 cut(s)	213, 660, 964
MboII	GAAGA	4 cut(s)	389, 581, 882, 1002
MflI	RGATCY	1 cut(s)	964
MhlI	GDGCHC	3 cut(s)	8, 476, 748
MlsI	TGGCCA	1 cut(s)	32
MluNI	TGGCCA	1 cut(s)	32
MlyI	GAGTC	2 cut(s)	191, 272
MnlI	CCTC	8 cut(s)	11, 281, 337, 412, 466, 828, 962, 1033
Mox20I	TGGCCA	1 cut(s)	32
Mph1103I	ATGCAT	1 cut(s)	1168
MroXI	GAANNNNTTC	1 cut(s)	1004
MscI	TGGCCA	1 cut(s)	32
MseI	TTAA	4 cut(s)	542, 683, 728, 822
Msp20I	TGGCCA	1 cut(s)	32
MwoI	GCNNNNNNNGC	5 cut(s)	127, 446, 752, 845, 1121
NdeII	GATC	3 cut(s)	213, 660, 964
NlaIII	CATG	4 cut(s)	143, 220, 435, 653
NmuCI	GTSAC	4 cut(s)	46, 298, 383, 645
NsiI	ATGCAT	1 cut(s)	1168
PaeR7I	CTCGAG	1 cut(s)	89
PagI	TCATGA	2 cut(s)	139, 216
PdmI	GAANNNNTTC	1 cut(s)	1004
PfeI	GAWTC	3 cut(s)	161, 617, 1097
PkrI	GCNGC	1 cut(s)	938
PleI	GAGTC	2 cut(s)	190, 272
PmaCI	CACGTG	1 cut(s)	66
PmlI	CACGTG	1 cut(s)	66
PpsI	GAGTC	2 cut(s)	190, 272
Ppu21I	YACGTR	1 cut(s)	66
Psp1406I	AACGTT	1 cut(s)	375
PspCI	CACGTG	1 cut(s)	66
PspPI	GGNCC	1 cut(s)	837
PsuI	RGATCY	1 cut(s)	964
SaqAI	TTAA	4 cut(s)	542, 683, 728, 822
SatI	GCNGC	1 cut(s)	937
Sau3AI	GATC	3 cut(s)	213, 660, 964
Sau96I	GGNCC	1 cut(s)	837
SchI	GAGTC	2 cut(s)	191, 272
SduI	GDGCHC	3 cut(s)	8, 476, 748
SfaNI	GCATC	2 cut(s)	1038, 1153
Sfr274I	CTCGAG	1 cut(s)	89
SlaI	CTCGAG	1 cut(s)	89
SmlI	CTYRAG	2 cut(s)	89, 548
SmoI	CTYRAG	2 cut(s)	89, 548
SpeI	ACTAGT	1 cut(s)	329
SsiI	CCGC	1 cut(s)	638
SspMI	CTAG	3 cut(s)	41, 330, 713
StyI	CCWWGG	2 cut(s)	555, 712
TaaI	ACNGT	2 cut(s)	1017, 1157
TaiI	ACGT	2 cut(s)	68, 378
TaqI	TCGA	3 cut(s)	90, 483, 1086
TfiI	GAWTC	3 cut(s)	161, 617, 1097
Tru1I	TTAA	4 cut(s)	542, 683, 728, 822
Tru9I	TTAA	4 cut(s)	542, 683, 728, 822
TseFI	GTSAC	4 cut(s)	46, 298, 383, 645
TseI	GCWGC	1 cut(s)	936
Tsp45I	GTSAC	4 cut(s)	46, 298, 383, 645
TspDTI	ATGAA	5 cut(s)	128, 233, 420, 615, 666
TspGWI	ACGGA	2 cut(s)	633, 747
VneI	GTGCAC	1 cut(s)	744
XapI	RAATTY	5 cut(s)	320, 812, 926, 1004, 1026
XhoI	CTCGAG	1 cut(s)	89
XmaJI	CCTAGG	1 cut(s)	712
XmnI	GAANNNNTTC	1 cut(s)	1004
XspI	CTAG	3 cut(s)	41, 330, 713
Zsp2I	ATGCAT	1 cut(s)	1168

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.