Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004540

Physical Location & Seq

Genomic Coordinates Forward (+)

63962736 .. 63964157

Gene Structure 1422 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ41008

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1422 bp

ATGGCCATCAGCACATTGGGATCACCTCACATGGCTGACCTTCACAACTTACCTGACCTTGTTATTGACAAAATCCTTCGACTCCTTCCCACTAAAGCTGCCATCCAGGTGAGCTTTCTTTCCAAGCAATGGCAAGCTGCAGTCTCTTCATTACCTGAACTAAATTTTAACGAGGATGATGATTTTGACCGCCACAACCTTAATCGTTTCGGTCACTACCAACATCAAGATCAACACAAGAGGTTCATCAACTTTTTGGAGGGGTATTTAGATTATCGTGAGAAATACGACCGTAAAGAGCTCCTAGATAAACTAAGTCTTCACATGAGGATGTATGGGCTTGGAGATTATTCTACCATAACTAAGTGGTTGAAATATGCATGTGAGAGAGGCCTCAAAGAGTTGGATATCAGTCCTAAAATGAATCCAAAACAATATGGGATTGTCAGTGAGCACGCCGTGGAAAGTTATTTTGACTACAACCGCTTCTACCGCATGCCTTGGGTGGCCATTAATGCTAGTGCAAAATCTTTAACTAGTCTAAAACTAGCGTACGTGAGAATCCCGGACGTTCGAGCAAGAGGTTTTTCAACTCCTGGGCGATTTTTTCCGTCTTTGAAAATTCTGTCCTTCAAAACTGCACGGTTTTTTACTGACCAAGAACTCTATTCTGTTTTATTTGAGTGCCCTTCCATTGAGTACCTGTCATTAACTGATTGTTCGATTGGAAACTCCAAGTGTTATGTTTGCTGCTCAAGTCTCAAGTCCTTGGAAGTCAAGTATTGCCAGCTTGATGATATTCGAGTTGTTCATGCCTTCAATCTTGAATCTTTTACATTTGTCTCACTGCCGGATTCAAAATGTGAAAAGATGATCTTGAATAATTCCTTCAACTTGAAATATATAAACATTTGTGTTGATTACCTCGGGGAATTTTCTTTATTGGGAAGCCATCGTGCACTAGAGGCCAAAATCATTAACCAATATGTCGAATTCTTCGAGTTCTTTGATGGTTATTTGAGTGCCAATGTTTCTGTTAAAGCCTATGAGGCCACAATTTTAGTTGGGGAACTTTTCGATCCAGAATGGTTCTCGTCATATTCGACACATTTTCCTAGTCTGATGAGCTTTTTTGGAAGATTTAGCTGCTGCTTTAAAATAAACCTCTACAATCAAGATGTCCATGCACTCATTGTTCCTAAGAATTACAGAAAGACCTCCTTTGAACTATTGCCTAATACTTCCAATTTGCAGGCGTGGATGCCGAATCCACCAATAGTGGGAAGTAGAGAGTATTTGGAATTGAAGGACTCCTTGCAATGGATTGCACCTTTTGCACAAATACTGATCATGCCGGTGGACGTTGAAGAAGACAGAAAGAAAGTAGGCCAGCGAGGTAGTCCTGCAGCTATAGATGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box

Protein Analysis

473

Amino Acids

54.73

Weight (kDa)

6.33

Isoelectric Point (pI)

36.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	14 - 52	1.7e-06	F-box domain
LRR_At5g56370	PF24758	172 - 287	4.9e-10	FBD-associated F-box protein At5g56370, LRR repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004540)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g33180 FvH4_4g33210 FvH4_4g33310 FvH4_4g33501
rosa_chinensis	RchiOBHm_Chr4g0442321 RchiOBHm_Chr4g0442821 RchiOBHm_Chr4g0442851 RchiOBHm_Chr4g0442941
rosa_multiflora	Rmu_co8426117.1_g000001 Rmu_sc0000124.1_g000038 Rmu_sc0000124.1_g000050 Rmu_sc0000124.1_g000054 Rmu_sc0007295.1_g000003 Rmu_sc0041664.1_g000001 Rmu_ssc0000204.1_g000015 Rmu_ssc0000204.1_g000016 Rmu_ssc0000204.1_g000050 Rmu_ssc0000204.1_g000053 Rmu_ssc0000204.1_g000057
rosa_roxburghii	Rroxscaffold_5G00383340 Rroxscaffold_5G00383620
rosa_rugosa	Rorug04G0343600
rosa_samantha	Rh4AG392000 Rh4AG393000 Rh4AG393300 Rh4AG396000 Rh4AG397300 Rh4BG406500
rosa_wichuraiana	Rw4G033860 Rw4G033950 Rw4G033970 Rw4G033980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	129
AciI	CCGC	3 cut(s)	190, 484, 493
AclWI	GGATC	2 cut(s)	28, 1073
AcoI	YGGCCR	2 cut(s)	3, 507
AcsI	RAATTY	4 cut(s)	163, 621, 932, 992
AdeI	CACNNNGTG	1 cut(s)	460
AfaI	GTAC	2 cut(s)	554, 701
AfiI	CCNNNNNNNGG	3 cut(s)	129, 1280, 1320
AhlI	ACTAGT	1 cut(s)	536
AjnI	CCWGG	2 cut(s)	105, 595
AluBI	AGCT	8 cut(s)	98, 114, 137, 301, 790, 1128, 1146, 1409
AluI	AGCT	8 cut(s)	98, 114, 137, 301, 790, 1128, 1146, 1409
Alw21I	GWGCWC	3 cut(s)	303, 456, 961
Alw26I	GTCTC	3 cut(s)	148, 764, 847
Alw44I	GTGCAC	1 cut(s)	957
AlwI	GGATC	2 cut(s)	28, 1073
Ama87I	CYCGRG	1 cut(s)	926
AoxI	GGCC	6 cut(s)	3, 391, 507, 966, 1050, 1387
ApaLI	GTGCAC	1 cut(s)	957
ApeKI	GCWGC	6 cut(s)	98, 137, 750, 1146, 1149, 1406
ApoI	RAATTY	4 cut(s)	163, 621, 932, 992
AseI	ATTAAT	1 cut(s)	513
AsuC2I	CCSGG	1 cut(s)	566
AsuHPI	GGTGA	2 cut(s)	15, 121
AvaI	CYCGRG	1 cut(s)	926
BaeGI	GKGCMC	2 cut(s)	689, 961
BalI	TGGCCA	2 cut(s)	5, 509
BanII	GRGCYC	1 cut(s)	303
BbsI	GAAGAC	2 cut(s)	311, 1377
Bbv12I	GWGCWC	3 cut(s)	303, 456, 961
BbvI	GCAGC	6 cut(s)	85, 124, 737, 1133, 1136, 1418
BccI	CCATC	4 cut(s)	14, 110, 960, 1004
BceAI	ACGGC	1 cut(s)	443
BciT130I	CCWGG	2 cut(s)	107, 597
BclI	TGATCA	1 cut(s)	1347
BcnI	CCSGG	1 cut(s)	566
BcoDI	GTCTC	3 cut(s)	148, 764, 847
BcuI	ACTAGT	1 cut(s)	536
BfaI	CTAG	6 cut(s)	305, 519, 537, 548, 962, 1116
BfmI	CTRYAG	3 cut(s)	138, 1404, 1410
BglI	GCCNNNNNGGC	1 cut(s)	1049
BisI	GCNGC	6 cut(s)	99, 138, 751, 1147, 1150, 1407
BlsI	GCNGC	6 cut(s)	100, 139, 752, 1148, 1151, 1408
Bme1390I	CCNGG	3 cut(s)	107, 566, 597
BmeT110I	CYCGRG	1 cut(s)	926
BmrFI	CCNGG	3 cut(s)	107, 566, 597
BmsI	GCATC	1 cut(s)	1251
BpiI	GAAGAC	2 cut(s)	311, 1377
BpuEI	CTTGAG	2 cut(s)	739, 746
BpuMI	CCSGG	1 cut(s)	566
BsaAI	YACGTR	1 cut(s)	556
BsaJI	CCNNGG	5 cut(s)	459, 500, 596, 768, 925
Bsc4I	CCNNNNNNNGG	3 cut(s)	129, 1280, 1320
Bse118I	RCCGGY	1 cut(s)	1354
Bse3DI	GCAATG	2 cut(s)	134, 1325
BseBI	CCWGG	2 cut(s)	107, 597
BseDI	CCNNGG	5 cut(s)	459, 500, 596, 768, 925
BseGI	GGATG	4 cut(s)	102, 181, 336, 1266
BseLI	CCNNNNNNNGG	3 cut(s)	129, 1280, 1320
BseMI	GCAATG	2 cut(s)	134, 1325
BseSI	GKGCMC	2 cut(s)	689, 961
BseXI	GCAGC	6 cut(s)	85, 124, 737, 1133, 1136, 1418
BsgI	GTGCAG	1 cut(s)	624
Bsh1285I	CGRYCG	1 cut(s)	292
BshFI	GGCC	6 cut(s)	5, 393, 509, 968, 1052, 1389
BsiEI	CGRYCG	1 cut(s)	292
BsiHKAI	GWGCWC	3 cut(s)	303, 456, 961
BsiHKCI	CYCGRG	1 cut(s)	926
BsiSI	CCGG	3 cut(s)	566, 851, 1355
BsiWI	CGTACG	1 cut(s)	552
BslI	CCNNNNNNNGG	3 cut(s)	129, 1280, 1320
BsmAI	GTCTC	3 cut(s)	148, 764, 847
BsnI	GGCC	6 cut(s)	5, 393, 509, 968, 1052, 1389
BsoBI	CYCGRG	1 cut(s)	926
Bsp1286I	GDGCHC	4 cut(s)	303, 456, 689, 961
Bsp143I	GATC	5 cut(s)	20, 229, 873, 1078, 1347
BspACI	CCGC	3 cut(s)	190, 484, 493
BspANI	GGCC	6 cut(s)	5, 393, 509, 968, 1052, 1389
BspMAI	CTGCAG	2 cut(s)	142, 1408
BspPI	GGATC	2 cut(s)	28, 1073
BsrDI	GCAATG	2 cut(s)	134, 1325
BsrFI	RCCGGY	1 cut(s)	1354
BssAI	RCCGGY	1 cut(s)	1354
BssECI	CCNNGG	5 cut(s)	459, 500, 596, 768, 925
BssMI	GATC	5 cut(s)	20, 229, 873, 1078, 1347
BssT1I	CCWWGG	2 cut(s)	500, 768
Bst2UI	CCWGG	2 cut(s)	107, 597
Bst4CI	ACNGT	2 cut(s)	293, 645
Bst6I	CTCTTC	1 cut(s)	151
BstAPI	GCANNNNNTGC	1 cut(s)	1334
BstBAI	YACGTR	1 cut(s)	556
BstC8I	GCNNGC	6 cut(s)	135, 456, 497, 788, 1254, 1391
BstDEI	CTNAG	3 cut(s)	314, 363, 1200
BstDSI	CCRYGG	1 cut(s)	459
BstF5I	GGATG	4 cut(s)	102, 181, 336, 1266
BstKTI	GATC	5 cut(s)	23, 232, 876, 1081, 1350
BstMAI	GTCTC	3 cut(s)	148, 764, 847
BstMBI	GATC	5 cut(s)	20, 229, 873, 1078, 1347
BstMCI	CGRYCG	1 cut(s)	292
BstMWI	GCNNNNNNNGC	5 cut(s)	492, 515, 965, 1049, 1334
BstNI	CCWGG	2 cut(s)	107, 597
BstNSI	RCATGY	2 cut(s)	384, 499
BstSCI	CCNGG	3 cut(s)	105, 564, 595
BstSFI	CTRYAG	3 cut(s)	138, 1404, 1410
BstSLI	GKGCMC	2 cut(s)	689, 961
BstV1I	GCAGC	6 cut(s)	85, 124, 737, 1133, 1136, 1418
BstV2I	GAAGAC	2 cut(s)	311, 1377
BsuRI	GGCC	6 cut(s)	5, 393, 509, 968, 1052, 1389
BtgI	CCRYGG	1 cut(s)	459
BtsCI	GGATG	4 cut(s)	102, 181, 336, 1266
BtsI	GCAGTG	1 cut(s)	845
BtsIMutI	CAGTG	2 cut(s)	454, 845
Cac8I	GCNNGC	6 cut(s)	135, 456, 497, 788, 1254, 1391
Cfr10I	RCCGGY	1 cut(s)	1354
Csp6I	GTAC	2 cut(s)	553, 700
CviAII	CATG	7 cut(s)	31, 325, 381, 496, 812, 1184, 1351
CviQI	GTAC	2 cut(s)	553, 700
DdeI	CTNAG	3 cut(s)	314, 363, 1200
DpnI	GATC	5 cut(s)	22, 231, 875, 1080, 1349
DpnII	GATC	5 cut(s)	20, 229, 873, 1078, 1347
DraI	TTTAAA	1 cut(s)	1156
DraIII	CACNNNGTG	1 cut(s)	460
EaeI	YGGCCR	2 cut(s)	3, 507
Eam1104I	CTCTTC	1 cut(s)	151
EarI	CTCTTC	1 cut(s)	151
Ecl136II	GAGCTC	1 cut(s)	301
Eco130I	CCWWGG	2 cut(s)	500, 768
Eco147I	AGGCCT	1 cut(s)	393
Eco24I	GRGCYC	1 cut(s)	303
Eco32I	GATATC	1 cut(s)	409
Eco53kI	GAGCTC	1 cut(s)	301
Eco88I	CYCGRG	1 cut(s)	926
EcoICRI	GAGCTC	1 cut(s)	301
EcoRI	GAATTC	1 cut(s)	992
EcoRII	CCWGG	2 cut(s)	105, 595
EcoRV	GATATC	1 cut(s)	409
EcoT14I	CCWWGG	2 cut(s)	500, 768
EcoT22I	ATGCAT	1 cut(s)	382
EcoT38I	GRGCYC	1 cut(s)	303
ErhI	CCWWGG	2 cut(s)	500, 768
FaeI	CATG	7 cut(s)	34, 328, 384, 499, 815, 1187, 1354
FalI	AAGNNNNNCTT	6 cut(s)	860, 892, 1205, 1237, 1298, 1330
FatI	CATG	7 cut(s)	30, 324, 380, 495, 811, 1183, 1350
FbaI	TGATCA	1 cut(s)	1347
Fnu4HI	GCNGC	6 cut(s)	99, 138, 751, 1147, 1150, 1407
FokI	GGATG	4 cut(s)	89, 188, 343, 1273
FriOI	GRGCYC	1 cut(s)	303
Fsp4HI	GCNGC	6 cut(s)	99, 138, 751, 1147, 1150, 1407
FspBI	CTAG	6 cut(s)	305, 519, 537, 548, 962, 1116
GluI	GCNGC	6 cut(s)	99, 138, 751, 1147, 1150, 1407
HaeIII	GGCC	6 cut(s)	5, 393, 509, 968, 1052, 1389
HapII	CCGG	3 cut(s)	566, 851, 1355
Hin1II	CATG	7 cut(s)	34, 328, 384, 499, 815, 1187, 1354
HinfI	GANTC	7 cut(s)	81, 424, 561, 827, 854, 1267, 1310
HpaII	CCGG	3 cut(s)	566, 851, 1355
HphI	GGTGA	2 cut(s)	15, 121
Hpy166II	GTNNAC	2 cut(s)	959, 1360
Hpy188I	TCNGA	1 cut(s)	1122
Hpy188III	TCNNGA	6 cut(s)	227, 278, 824, 877, 1082, 1175
Hpy8I	GTNNAC	2 cut(s)	959, 1360
HpyAV	CCTTC	8 cut(s)	50, 86, 95, 640, 699, 826, 898, 1300
HpyCH4III	ACNGT	2 cut(s)	293, 645
HpyCH4IV	ACGT	3 cut(s)	555, 570, 1362
HpyF10VI	GCNNNNNNNGC	5 cut(s)	492, 515, 965, 1049, 1334
HpyF3I	CTNAG	3 cut(s)	314, 363, 1200
HpySE526I	ACGT	3 cut(s)	555, 570, 1362
Hsp92II	CATG	7 cut(s)	34, 328, 384, 499, 815, 1187, 1354
Ksp22I	TGATCA	1 cut(s)	1347
Kzo9I	GATC	5 cut(s)	20, 229, 873, 1078, 1347
LmnI	GCTCC	1 cut(s)	306
Lsp1109I	GCAGC	6 cut(s)	85, 124, 737, 1133, 1136, 1418
LweI	GCATC	1 cut(s)	1251
MaeI	CTAG	6 cut(s)	305, 519, 537, 548, 962, 1116
MaeII	ACGT	3 cut(s)	555, 570, 1362
MaeIII	GTNAC	1 cut(s)	212
MalI	GATC	5 cut(s)	22, 231, 875, 1080, 1349
MboI	GATC	5 cut(s)	20, 229, 873, 1078, 1347
MboII	GAAGA	6 cut(s)	138, 311, 988, 1149, 1379, 1382
MhlI	GDGCHC	4 cut(s)	303, 456, 689, 961
MlsI	TGGCCA	2 cut(s)	5, 509
MluCI	AATT	9 cut(s)	163, 621, 883, 932, 992, 1056, 1204, 1246, 1301
MluNI	TGGCCA	2 cut(s)	5, 509
MlyI	GAGTC	2 cut(s)	75, 1304
MmeI	TCCRAC	1 cut(s)	384
Mox20I	TGGCCA	2 cut(s)	5, 509
Mph1103I	ATGCAT	1 cut(s)	382
MscI	TGGCCA	2 cut(s)	5, 509
MseI	TTAA	8 cut(s)	168, 201, 513, 533, 710, 978, 1038, 1155
MslI	CAYNNNNRTG	3 cut(s)	107, 329, 1355
Msp20I	TGGCCA	2 cut(s)	5, 509
MspI	CCGG	3 cut(s)	566, 851, 1355
MspR9I	CCNGG	3 cut(s)	107, 566, 597
MvaI	CCWGG	2 cut(s)	107, 597
MwoI	GCNNNNNNNGC	5 cut(s)	492, 515, 965, 1049, 1334
NciI	CCSGG	1 cut(s)	566
NdeII	GATC	5 cut(s)	20, 229, 873, 1078, 1347
NlaIII	CATG	7 cut(s)	34, 328, 384, 499, 815, 1187, 1354
NmuCI	GTSAC	1 cut(s)	212
NsiI	ATGCAT	1 cut(s)	382
NspI	RCATGY	2 cut(s)	384, 499
PaeI	GCATGC	1 cut(s)	499
PceI	AGGCCT	1 cut(s)	393
PcsI	WCGNNNNNNNCGW	2 cut(s)	996, 1100
PfeI	GAWTC	5 cut(s)	424, 561, 827, 854, 1267
Pfl23II	CGTACG	1 cut(s)	552
PflMI	CCANNNNNTGG	1 cut(s)	129
PfoI	TCCNGGA	1 cut(s)	564
PkrI	GCNGC	6 cut(s)	100, 139, 752, 1148, 1151, 1408
PleI	GAGTC	2 cut(s)	75, 1304
PpsI	GAGTC	2 cut(s)	75, 1304
Ppu21I	YACGTR	1 cut(s)	556
PshBI	ATTAAT	1 cut(s)	513
Psp124BI	GAGCTC	1 cut(s)	303
Psp6I	CCWGG	2 cut(s)	105, 595
PspGI	CCWGG	2 cut(s)	105, 595
PspLI	CGTACG	1 cut(s)	552
PstI	CTGCAG	2 cut(s)	142, 1408
RsaI	GTAC	2 cut(s)	554, 701
RsaNI	GTAC	2 cut(s)	553, 700
RseI	CAYNNNNRTG	3 cut(s)	107, 329, 1355
SacI	GAGCTC	1 cut(s)	303
SaqAI	TTAA	8 cut(s)	168, 201, 513, 533, 710, 978, 1038, 1155
SatI	GCNGC	6 cut(s)	99, 138, 751, 1147, 1150, 1407
Sau3AI	GATC	5 cut(s)	20, 229, 873, 1078, 1347
SchI	GAGTC	2 cut(s)	75, 1304
ScrFI	CCNGG	3 cut(s)	107, 566, 597
SduI	GDGCHC	4 cut(s)	303, 456, 689, 961
SfaNI	GCATC	1 cut(s)	1251
SfcI	CTRYAG	3 cut(s)	138, 1404, 1410
SmiMI	CAYNNNNRTG	3 cut(s)	107, 329, 1355
SmlI	CTYRAG	2 cut(s)	754, 761
SmoI	CTYRAG	2 cut(s)	754, 761
SpeI	ACTAGT	1 cut(s)	536
SphI	GCATGC	1 cut(s)	499
Sse9I	AATT	9 cut(s)	163, 621, 883, 932, 992, 1056, 1204, 1246, 1301
SseBI	AGGCCT	1 cut(s)	393
SsiI	CCGC	3 cut(s)	190, 484, 493
SspMI	CTAG	6 cut(s)	305, 519, 537, 548, 962, 1116
SstI	GAGCTC	1 cut(s)	303
StuI	AGGCCT	1 cut(s)	393
StyD4I	CCNGG	3 cut(s)	105, 564, 595
StyI	CCWWGG	2 cut(s)	500, 768
TaaI	ACNGT	2 cut(s)	293, 645
TaiI	ACGT	3 cut(s)	558, 573, 1365
TaqI	TCGA	8 cut(s)	79, 574, 722, 802, 990, 999, 1077, 1103
TaqII	GACCGA	1 cut(s)	200
TasI	AATT	9 cut(s)	163, 621, 883, 932, 992, 1056, 1204, 1246, 1301
TfiI	GAWTC	5 cut(s)	424, 561, 827, 854, 1267
Tru1I	TTAA	8 cut(s)	168, 201, 513, 533, 710, 978, 1038, 1155
Tru9I	TTAA	8 cut(s)	168, 201, 513, 533, 710, 978, 1038, 1155
TscAI	CASTG	2 cut(s)	454, 852
TseFI	GTSAC	1 cut(s)	212
TseI	GCWGC	6 cut(s)	98, 137, 750, 1146, 1149, 1406
Tsp45I	GTSAC	1 cut(s)	212
TspDTI	ATGAA	4 cut(s)	138, 235, 437, 800
TspGWI	ACGGA	1 cut(s)	600
TspRI	CASTG	2 cut(s)	454, 852
Van91I	CCANNNNNTGG	1 cut(s)	129
VneI	GTGCAC	1 cut(s)	957
VspI	ATTAAT	1 cut(s)	513
XapI	RAATTY	4 cut(s)	163, 621, 932, 992
XceI	RCATGY	2 cut(s)	384, 499
XcmI	CCANNNNNNNNNTGG	1 cut(s)	13
XspI	CTAG	6 cut(s)	305, 519, 537, 548, 962, 1116
Zsp2I	ATGCAT	1 cut(s)	382

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.