Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0004540

Physical Location & Seq

Genomic Coordinates Forward (+)

61005806 .. 61007227

Gene Structure 1422 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G033860.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1335 bp

ATGGCCATCAGCACATTGGGATCACCTCACATGGCTGACCTTCACAACTTACCTGACCTTGTTATTGACAAAATCCTTCGACTCCTTCCCACTAAAGCTGCCATCCAGGTGAGCTTTCTTTCCAAGCAATGGCAAGCTGCAGTCTCTTCATTCCGTGAACTAAATTTCAACGAGGATGATGATTTTGACCGCCACAACTTTAATCGTTTCGGTCACTACCAAATCAAGATCAACACAAGAGATGTATGGGTTCGAGATTATTCTACCATAACTAAGTGGTTGAAATATGCATGTGAGAGAGGCCTCAAAGAGTTGGATATCAGTCCTAAAATGAATCCAAAACAATATGGGATTGTCAGTGAGCACGCCGTGGAAAGTTATTTTGACTACAACCGCTTCTACCGCATGCCTTGGGTGGCCATTAATGCTAGTGCAAAATCTTTAACTAGTCTAAAACTAGCGTATGTGAGAATCCCGGACGTTCGAGCAAGATGTTTTTCAACTCCTGGGCGATTTTTTCCGTCTTTGAAAACTCTGTCCTTCAAAACTGCACGGTTTTTTACTGACCAAGAACTCTATTCTGTTTTATTTGAGTGCCCTTCCATTGAGTACCTGTCATTAACTGATTGTTCGATTGGAAACTCCAAGTGTTATGTTTGCTGCTCAAGTCTCAAGTCCTTGGAAGTCAAGTATTGCCAGCTTGATGATATTCGAGTTGTTCATGCCTTCAATCTTGAATCTTTTACATTTGTCTCACTGCCGGATTCAAAATGTGAAAAGATGATCTTGAATAATTCCTTCAACTTGAAATATATAAACATTTGTGTTGATTTCCTCGGGGAATTTTCTTTATTGGGAAGCCATCGTGCACTAGAGGCCAAAATCATTAACCAATATGTCGAATTCTTCGAGTTCTTTGATGGTTATTTGAGTGCCAATGTTTCTGTTAAAGCCTATGAGGCCACAATTTTAGTTGGGGAACTTTTCGACCAAGAATGGTTCTCATCATATTCGACACATTTTCCTAGTCTGATGAGCTTTTTTGGAAGATTTAGCTGCTGCTATAAAATAAACCTCTACAATCAAGATGTCCATGCACTCATTGTTCCTAAGAATTACAGAAAGAAGACCTCCTTTGAACTATTGCCTAATACTTCCACTTTGCAGGCGTGGATGCCGAATCCACCAATAGTGGGAAGTAGAGAGTATTTGGAATTGAAGGACTCCTTGCAATGGATTGCACCTTTTGCACAAATACTGATCATGCCGGTGGACGTTGAAGAAGACAGAAAGAAAGTAGACCAGCGAGGTAGTCCTGCAGCTATAGATGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box LRR_2

Protein Analysis

444

Amino Acids

51.34

Weight (kDa)

6.53

Isoelectric Point (pI)

35.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	14 - 52	1.7e-06	F-box domain
LRR_At1g61320_AtMIF1	PF23622	74 - 274	5.5e-06	At1g61320/AtMIF1, LRR domain
LRR_At5g56370	PF24758	142 - 257	2.8e-10	FBD-associated F-box protein At5g56370, LRR repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004540)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g33180 FvH4_4g33210 FvH4_4g33310 FvH4_4g33501
rosa_chinensis	RchiOBHm_Chr4g0442321 RchiOBHm_Chr4g0442821 RchiOBHm_Chr4g0442851 RchiOBHm_Chr4g0442941
rosa_multiflora	Rmu_co8426117.1_g000001 Rmu_sc0000124.1_g000038 Rmu_sc0000124.1_g000050 Rmu_sc0000124.1_g000054 Rmu_sc0007295.1_g000003 Rmu_sc0041664.1_g000001 Rmu_ssc0000204.1_g000015 Rmu_ssc0000204.1_g000016 Rmu_ssc0000204.1_g000050 Rmu_ssc0000204.1_g000053 Rmu_ssc0000204.1_g000057
rosa_roxburghii	Rroxscaffold_5G00383340 Rroxscaffold_5G00383620
rosa_rugosa	Rorug04G0343600
rosa_samantha	Rh4AG392000 Rh4AG393000 Rh4AG393300 Rh4AG396000 Rh4AG397300 Rh4BG406500
rosa_wichuraiana	Rw4G033860 Rw4G033950 Rw4G033970 Rw4G033980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	129
AccI	GTMKAC	1 cut(s)	1299
AciI	CCGC	3 cut(s)	190, 394, 403
AclWI	GGATC	1 cut(s)	28
AcoI	YGGCCR	2 cut(s)	3, 417
AcsI	RAATTY	3 cut(s)	163, 842, 902
AdeI	CACNNNGTG	1 cut(s)	370
AfaI	GTAC	1 cut(s)	611
AfiI	CCNNNNNNNGG	3 cut(s)	129, 1193, 1233
AhlI	ACTAGT	1 cut(s)	446
AjnI	CCWGG	2 cut(s)	105, 505
AluBI	AGCT	7 cut(s)	98, 114, 137, 700, 1038, 1056, 1322
AluI	AGCT	7 cut(s)	98, 114, 137, 700, 1038, 1056, 1322
Alw21I	GWGCWC	2 cut(s)	366, 871
Alw26I	GTCTC	3 cut(s)	148, 674, 757
Alw44I	GTGCAC	1 cut(s)	867
AlwI	GGATC	1 cut(s)	28
Ama87I	CYCGRG	1 cut(s)	836
AoxI	GGCC	5 cut(s)	3, 301, 417, 876, 960
ApaLI	GTGCAC	1 cut(s)	867
ApeKI	GCWGC	6 cut(s)	98, 137, 660, 1056, 1059, 1319
ApoI	RAATTY	3 cut(s)	163, 842, 902
AseI	ATTAAT	1 cut(s)	423
AsuC2I	CCSGG	1 cut(s)	476
AsuHPI	GGTGA	2 cut(s)	15, 121
AvaI	CYCGRG	1 cut(s)	836
BaeGI	GKGCMC	2 cut(s)	599, 871
BalI	TGGCCA	2 cut(s)	5, 419
BbsI	GAAGAC	2 cut(s)	1133, 1290
Bbv12I	GWGCWC	2 cut(s)	366, 871
BbvI	GCAGC	6 cut(s)	85, 124, 647, 1043, 1046, 1331
BccI	CCATC	4 cut(s)	14, 110, 870, 914
BceAI	ACGGC	1 cut(s)	353
BciT130I	CCWGG	2 cut(s)	107, 507
BclI	TGATCA	1 cut(s)	1260
BcnI	CCSGG	1 cut(s)	476
BcoDI	GTCTC	3 cut(s)	148, 674, 757
BcuI	ACTAGT	1 cut(s)	446
BfaI	CTAG	5 cut(s)	429, 447, 458, 872, 1026
BfmI	CTRYAG	3 cut(s)	138, 1317, 1323
BglI	GCCNNNNNGGC	1 cut(s)	959
BisI	GCNGC	6 cut(s)	99, 138, 661, 1057, 1060, 1320
BlsI	GCNGC	6 cut(s)	100, 139, 662, 1058, 1061, 1321
Bme1390I	CCNGG	3 cut(s)	107, 476, 507
BmeT110I	CYCGRG	1 cut(s)	836
BmrFI	CCNGG	3 cut(s)	107, 476, 507
BmsI	GCATC	1 cut(s)	1164
BpiI	GAAGAC	2 cut(s)	1133, 1290
BpuEI	CTTGAG	2 cut(s)	649, 656
BpuMI	CCSGG	1 cut(s)	476
BsaJI	CCNNGG	5 cut(s)	369, 410, 506, 678, 835
Bsc4I	CCNNNNNNNGG	3 cut(s)	129, 1193, 1233
Bse118I	RCCGGY	1 cut(s)	1267
Bse3DI	GCAATG	2 cut(s)	134, 1238
BseBI	CCWGG	2 cut(s)	107, 507
BseDI	CCNNGG	5 cut(s)	369, 410, 506, 678, 835
BseGI	GGATG	3 cut(s)	102, 181, 1179
BseLI	CCNNNNNNNGG	3 cut(s)	129, 1193, 1233
BseMI	GCAATG	2 cut(s)	134, 1238
BseSI	GKGCMC	2 cut(s)	599, 871
BseXI	GCAGC	6 cut(s)	85, 124, 647, 1043, 1046, 1331
BsgI	GTGCAG	1 cut(s)	534
BshFI	GGCC	5 cut(s)	5, 303, 419, 878, 962
BsiHKAI	GWGCWC	2 cut(s)	366, 871
BsiHKCI	CYCGRG	1 cut(s)	836
BsiSI	CCGG	3 cut(s)	476, 761, 1268
BslI	CCNNNNNNNGG	3 cut(s)	129, 1193, 1233
BsmAI	GTCTC	3 cut(s)	148, 674, 757
BsnI	GGCC	5 cut(s)	5, 303, 419, 878, 962
BsoBI	CYCGRG	1 cut(s)	836
Bsp1286I	GDGCHC	3 cut(s)	366, 599, 871
Bsp143I	GATC	4 cut(s)	20, 228, 783, 1260
BspACI	CCGC	3 cut(s)	190, 394, 403
BspANI	GGCC	5 cut(s)	5, 303, 419, 878, 962
BspMAI	CTGCAG	2 cut(s)	142, 1321
BspPI	GGATC	1 cut(s)	28
BsrDI	GCAATG	2 cut(s)	134, 1238
BsrFI	RCCGGY	1 cut(s)	1267
BssAI	RCCGGY	1 cut(s)	1267
BssECI	CCNNGG	5 cut(s)	369, 410, 506, 678, 835
BssMI	GATC	4 cut(s)	20, 228, 783, 1260
BssT1I	CCWWGG	2 cut(s)	410, 678
Bst2UI	CCWGG	2 cut(s)	107, 507
Bst4CI	ACNGT	1 cut(s)	555
Bst6I	CTCTTC	1 cut(s)	151
BstAPI	GCANNNNNTGC	1 cut(s)	1247
BstC8I	GCNNGC	5 cut(s)	135, 366, 407, 698, 1167
BstDEI	CTNAG	2 cut(s)	273, 1110
BstDSI	CCRYGG	1 cut(s)	369
BstF5I	GGATG	3 cut(s)	102, 181, 1179
BstKTI	GATC	4 cut(s)	23, 231, 786, 1263
BstMAI	GTCTC	3 cut(s)	148, 674, 757
BstMBI	GATC	4 cut(s)	20, 228, 783, 1260
BstMWI	GCNNNNNNNGC	5 cut(s)	402, 425, 875, 959, 1247
BstNI	CCWGG	2 cut(s)	107, 507
BstNSI	RCATGY	2 cut(s)	294, 409
BstSCI	CCNGG	3 cut(s)	105, 474, 505
BstSFI	CTRYAG	3 cut(s)	138, 1317, 1323
BstSLI	GKGCMC	2 cut(s)	599, 871
BstV1I	GCAGC	6 cut(s)	85, 124, 647, 1043, 1046, 1331
BstV2I	GAAGAC	2 cut(s)	1133, 1290
BsuRI	GGCC	5 cut(s)	5, 303, 419, 878, 962
BtgI	CCRYGG	1 cut(s)	369
BtsCI	GGATG	3 cut(s)	102, 181, 1179
BtsI	GCAGTG	1 cut(s)	755
BtsIMutI	CAGTG	2 cut(s)	364, 755
Cac8I	GCNNGC	5 cut(s)	135, 366, 407, 698, 1167
Cfr10I	RCCGGY	1 cut(s)	1267
Csp6I	GTAC	1 cut(s)	610
CviAII	CATG	6 cut(s)	31, 291, 406, 722, 1094, 1264
CviQI	GTAC	1 cut(s)	610
DdeI	CTNAG	2 cut(s)	273, 1110
DpnI	GATC	4 cut(s)	22, 230, 785, 1262
DpnII	GATC	4 cut(s)	20, 228, 783, 1260
DraIII	CACNNNGTG	1 cut(s)	370
EaeI	YGGCCR	2 cut(s)	3, 417
Eam1104I	CTCTTC	1 cut(s)	151
EarI	CTCTTC	1 cut(s)	151
Eco130I	CCWWGG	2 cut(s)	410, 678
Eco147I	AGGCCT	1 cut(s)	303
Eco32I	GATATC	1 cut(s)	319
Eco88I	CYCGRG	1 cut(s)	836
EcoRI	GAATTC	1 cut(s)	902
EcoRII	CCWGG	2 cut(s)	105, 505
EcoRV	GATATC	1 cut(s)	319
EcoT14I	CCWWGG	2 cut(s)	410, 678
EcoT22I	ATGCAT	1 cut(s)	292
ErhI	CCWWGG	2 cut(s)	410, 678
FaeI	CATG	6 cut(s)	34, 294, 409, 725, 1097, 1267
FalI	AAGNNNNNCTT	6 cut(s)	770, 802, 1118, 1150, 1211, 1243
FatI	CATG	6 cut(s)	30, 290, 405, 721, 1093, 1263
FbaI	TGATCA	1 cut(s)	1260
FblI	GTMKAC	1 cut(s)	1299
Fnu4HI	GCNGC	6 cut(s)	99, 138, 661, 1057, 1060, 1320
FokI	GGATG	3 cut(s)	89, 188, 1186
Fsp4HI	GCNGC	6 cut(s)	99, 138, 661, 1057, 1060, 1320
FspBI	CTAG	5 cut(s)	429, 447, 458, 872, 1026
GluI	GCNGC	6 cut(s)	99, 138, 661, 1057, 1060, 1320
HaeIII	GGCC	5 cut(s)	5, 303, 419, 878, 962
HapII	CCGG	3 cut(s)	476, 761, 1268
Hin1II	CATG	6 cut(s)	34, 294, 409, 725, 1097, 1267
HinfI	GANTC	7 cut(s)	81, 334, 471, 737, 764, 1180, 1223
HpaII	CCGG	3 cut(s)	476, 761, 1268
HphI	GGTGA	2 cut(s)	15, 121
Hpy166II	GTNNAC	4 cut(s)	158, 869, 1273, 1300
Hpy188I	TCNGA	1 cut(s)	1032
Hpy188III	TCNNGA	5 cut(s)	226, 254, 734, 787, 1085
Hpy8I	GTNNAC	4 cut(s)	158, 869, 1273, 1300
HpyAV	CCTTC	8 cut(s)	50, 86, 95, 550, 609, 736, 808, 1213
HpyCH4III	ACNGT	1 cut(s)	555
HpyCH4IV	ACGT	2 cut(s)	480, 1275
HpyF10VI	GCNNNNNNNGC	5 cut(s)	402, 425, 875, 959, 1247
HpyF3I	CTNAG	2 cut(s)	273, 1110
HpySE526I	ACGT	2 cut(s)	480, 1275
Hsp92II	CATG	6 cut(s)	34, 294, 409, 725, 1097, 1267
Ksp22I	TGATCA	1 cut(s)	1260
Kzo9I	GATC	4 cut(s)	20, 228, 783, 1260
Lsp1109I	GCAGC	6 cut(s)	85, 124, 647, 1043, 1046, 1331
LweI	GCATC	1 cut(s)	1164
MaeI	CTAG	5 cut(s)	429, 447, 458, 872, 1026
MaeII	ACGT	2 cut(s)	480, 1275
MaeIII	GTNAC	1 cut(s)	212
MalI	GATC	4 cut(s)	22, 230, 785, 1262
MboI	GATC	4 cut(s)	20, 228, 783, 1260
MboII	GAAGA	6 cut(s)	138, 898, 1059, 1138, 1292, 1295
MhlI	GDGCHC	3 cut(s)	366, 599, 871
MlsI	TGGCCA	2 cut(s)	5, 419
MluCI	AATT	7 cut(s)	163, 793, 842, 902, 966, 1114, 1214
MluNI	TGGCCA	2 cut(s)	5, 419
MlyI	GAGTC	2 cut(s)	75, 1217
MmeI	TCCRAC	1 cut(s)	294
Mox20I	TGGCCA	2 cut(s)	5, 419
Mph1103I	ATGCAT	1 cut(s)	292
MscI	TGGCCA	2 cut(s)	5, 419
MseI	TTAA	6 cut(s)	201, 423, 443, 620, 888, 948
MslI	CAYNNNNRTG	2 cut(s)	107, 1268
Msp20I	TGGCCA	2 cut(s)	5, 419
MspI	CCGG	3 cut(s)	476, 761, 1268
MspR9I	CCNGG	3 cut(s)	107, 476, 507
MvaI	CCWGG	2 cut(s)	107, 507
MwoI	GCNNNNNNNGC	5 cut(s)	402, 425, 875, 959, 1247
NciI	CCSGG	1 cut(s)	476
NdeII	GATC	4 cut(s)	20, 228, 783, 1260
NlaIII	CATG	6 cut(s)	34, 294, 409, 725, 1097, 1267
NmuCI	GTSAC	1 cut(s)	212
NsiI	ATGCAT	1 cut(s)	292
NspI	RCATGY	2 cut(s)	294, 409
PaeI	GCATGC	1 cut(s)	409
PceI	AGGCCT	1 cut(s)	303
PcsI	WCGNNNNNNNCGW	1 cut(s)	906
PfeI	GAWTC	5 cut(s)	334, 471, 737, 764, 1180
PflMI	CCANNNNNTGG	1 cut(s)	129
PfoI	TCCNGGA	1 cut(s)	474
PkrI	GCNGC	6 cut(s)	100, 139, 662, 1058, 1061, 1321
PleI	GAGTC	2 cut(s)	75, 1217
PpsI	GAGTC	2 cut(s)	75, 1217
PshBI	ATTAAT	1 cut(s)	423
Psp6I	CCWGG	2 cut(s)	105, 505
PspGI	CCWGG	2 cut(s)	105, 505
PstI	CTGCAG	2 cut(s)	142, 1321
RsaI	GTAC	1 cut(s)	611
RsaNI	GTAC	1 cut(s)	610
RseI	CAYNNNNRTG	2 cut(s)	107, 1268
SaqAI	TTAA	6 cut(s)	201, 423, 443, 620, 888, 948
SatI	GCNGC	6 cut(s)	99, 138, 661, 1057, 1060, 1320
Sau3AI	GATC	4 cut(s)	20, 228, 783, 1260
SchI	GAGTC	2 cut(s)	75, 1217
ScrFI	CCNGG	3 cut(s)	107, 476, 507
SduI	GDGCHC	3 cut(s)	366, 599, 871
SfaNI	GCATC	1 cut(s)	1164
SfcI	CTRYAG	3 cut(s)	138, 1317, 1323
SmiMI	CAYNNNNRTG	2 cut(s)	107, 1268
SmlI	CTYRAG	2 cut(s)	664, 671
SmoI	CTYRAG	2 cut(s)	664, 671
SpeI	ACTAGT	1 cut(s)	446
SphI	GCATGC	1 cut(s)	409
Sse9I	AATT	7 cut(s)	163, 793, 842, 902, 966, 1114, 1214
SseBI	AGGCCT	1 cut(s)	303
SsiI	CCGC	3 cut(s)	190, 394, 403
SspMI	CTAG	5 cut(s)	429, 447, 458, 872, 1026
StuI	AGGCCT	1 cut(s)	303
StyD4I	CCNGG	3 cut(s)	105, 474, 505
StyI	CCWWGG	2 cut(s)	410, 678
TaaI	ACNGT	1 cut(s)	555
TaiI	ACGT	2 cut(s)	483, 1278
TaqI	TCGA	9 cut(s)	79, 253, 484, 632, 712, 900, 909, 987, 1013
TaqII	GACCGA	1 cut(s)	200
TasI	AATT	7 cut(s)	163, 793, 842, 902, 966, 1114, 1214
TfiI	GAWTC	5 cut(s)	334, 471, 737, 764, 1180
Tru1I	TTAA	6 cut(s)	201, 423, 443, 620, 888, 948
Tru9I	TTAA	6 cut(s)	201, 423, 443, 620, 888, 948
TscAI	CASTG	2 cut(s)	364, 762
TseFI	GTSAC	1 cut(s)	212
TseI	GCWGC	6 cut(s)	98, 137, 660, 1056, 1059, 1319
Tsp45I	GTSAC	1 cut(s)	212
TspDTI	ATGAA	3 cut(s)	138, 347, 710
TspGWI	ACGGA	2 cut(s)	143, 510
TspRI	CASTG	2 cut(s)	364, 762
Van91I	CCANNNNNTGG	1 cut(s)	129
VneI	GTGCAC	1 cut(s)	867
VspI	ATTAAT	1 cut(s)	423
XapI	RAATTY	3 cut(s)	163, 842, 902
XceI	RCATGY	2 cut(s)	294, 409
XcmI	CCANNNNNNNNNTGG	1 cut(s)	13
XmiI	GTMKAC	1 cut(s)	1299
XspI	CTAG	5 cut(s)	429, 447, 458, 872, 1026
Zsp2I	ATGCAT	1 cut(s)	292

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.