Rw4G033980

F-box FBD LRR-repeat protein

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
Physical Location & Seq
Reverse (-)
61131422 .. 61132801
1380 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G033980.1

Sequence Viewer

Length: 1224 bp
ATGGCTGACCTTCACAACTTACCTGACCTTGTTATTGACAAAATCCTTCGACTCCTTCCCACAAAAGCTGCCATCCAGGTGAGCTTTCTTTCCAAGCAATGGCAAGGGGTAGTCTCTTCATTCCCTGAACTAAATTTCAACGAGGATGATGATTTTGACCGCCGCAACCTTAATCGTTTCGGTCACTACCAACATCAAGATCAACACAAGAGGTTCATCAACTTTTTGAAGGGGTATTTAGATTATCGTGAGAAATACGACCAGAAAGAGCTCCTAGATAAACTAAGTCTTCACATGAGGAGGTATGGGCGTCGAGATTCTTCTACCATAACCAAGTGGTTGAAATATGCATGTCAGAGTGGCCTCAAAGAGTTGGATATCAGTCCTAAAATGAGTGTTGACCCAAAACAATATGGGGTTGTCACTAAGCGCCCGGATTTCTACCGCTTGCCTTGGGCGGCCATTGCTACTGCAAAATCTTTAACTAGTCTAAAACTAGAGTCTGTGACAATCCCGCACGTTCGAATAAGCGATTTTCCAACTCCTGGGCGATTTTTGAAATTTTTTCCGTCTTTGAAAACTCTGTCCTTCAGAAATGCACGGTTTTTTACTGACCAAGCTCTCTATTCTGTTCTATATCAGTGCCCTTCCATCGAGTACCTGTCATTAACTGAATGTTCGATTGGAAACTCCAAGTGTTATGTTTGCTGCTCAAGTCTAAAGTCCTTGGAAGTTAAGTATTGCCGGCTTCAAGATATTCGAGTTGATCAGGCCTTCAATCTTGAATCTTTTACATTTGTCTCACCGCGGGATTCAAAATGTGAAAAGATGATCTTGAATAATGCCTTCAAGTTGACATATACAAACATTTGTGTTGATTACCTCCAGGAATTTTCTTTATTGGGAAGCCACCGTGCACTAGAGGCCACAATCATTACCCAGTATGTCCAATTCTTCGACTTTATTAGAAGATTTAGCTGCTGCCAGAAAATAAACCTCTACAATCAAGATGCTCATATGACCTCTTCTCCACCATTGCCTAAAACTTCCACTTTGCAGGTGCGGATGCCGAATCCACCAATAATGGGAAGTAGAGACTATTTGGAATTGGAAGACTCCTTACAATGGATTGCACCTTTTGCACAGATAGTGATCATGCCGGTGGACGCTGAAGAAGACAGAAAGAAAGTAGACCAGCGAGCTAGTCCTGTAGGCCATAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

407

Amino Acids

47.38

Weight (kDa)

8.95

Isoelectric Point (pI)

47.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 4 - 42 9e-06 F-box domain
LRR_At1g61320_AtMIF1 PF23622 94 - 271 3.1e-07 At1g61320/AtMIF1, LRR domain
LRR_At5g56370 PF24758 112 - 288 5.8e-13 FBD-associated F-box protein At5g56370, LRR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1048
Acc36I ACCTGC 1 cut(s) 1048
AccB7I CCANNNNNTGG 2 cut(s) 99, 545
AccI GTMKAC 1 cut(s) 1191
AccII CGCG 1 cut(s) 808
AciI CCGC 8 cut(s) 160, 163, 445, 458, 515, 806, 808, 1063
AcoI YGGCCR 1 cut(s) 459
AcsI RAATTY 3 cut(s) 133, 560, 890
AcuI CTGAAG 2 cut(s) 574, 1191
AcyI GRCGYC 1 cut(s) 310
AfaI GTAC 1 cut(s) 659
AfiI CCNNNNNNNGG 4 cut(s) 99, 545, 1085, 1125
AhlI ACTAGT 1 cut(s) 485
AjnI CCWGG 3 cut(s) 75, 544, 885
AjuI GAANNNNNNNTTGG 2 cut(s) 666, 698
AluBI AGCT 6 cut(s) 68, 84, 271, 620, 978, 1202
AluI AGCT 6 cut(s) 68, 84, 271, 620, 978, 1202
Alw21I GWGCWC 2 cut(s) 273, 919
Alw26I GTCTC 3 cut(s) 118, 805, 1089
Alw44I GTGCAC 1 cut(s) 915
AoxI GGCC 5 cut(s) 361, 459, 771, 924, 1213
ApaLI GTGCAC 1 cut(s) 915
ApeKI GCWGC 4 cut(s) 68, 708, 978, 981
ApoI RAATTY 3 cut(s) 133, 560, 890
AspLEI GCGC 1 cut(s) 432
AsuC2I CCSGG 1 cut(s) 434
AsuHPI GGTGA 2 cut(s) 91, 795
AsuII TTCGAA 1 cut(s) 523
BaeGI GKGCMC 2 cut(s) 647, 919
BanII GRGCYC 1 cut(s) 273
BarI GAAGNNNNNNTAC 2 cut(s) 1104, 1136
BbsI GAAGAC 3 cut(s) 281, 1119, 1182
Bbv12I GWGCWC 2 cut(s) 273, 919
BbvI GCAGC 4 cut(s) 55, 695, 965, 968
BccI CCATC 2 cut(s) 80, 659
BciT130I CCWGG 3 cut(s) 77, 546, 887
BclI TGATCA 2 cut(s) 766, 1152
BcnI CCSGG 1 cut(s) 434
BcoDI GTCTC 3 cut(s) 118, 805, 1089
BcuI ACTAGT 1 cut(s) 485
BfaI CTAG 5 cut(s) 275, 486, 497, 920, 1203
BfmI CTRYAG 1 cut(s) 1209
BfoI RGCGCY 1 cut(s) 433
BfuAI ACCTGC 1 cut(s) 1048
BisI GCNGC 6 cut(s) 69, 163, 459, 709, 979, 982
BlsI GCNGC 6 cut(s) 70, 164, 460, 710, 980, 983
Bme1390I CCNGG 4 cut(s) 77, 434, 546, 887
BmrFI CCNGG 4 cut(s) 77, 434, 546, 887
BmrI ACTGGG 1 cut(s) 934
BmsI GCATC 2 cut(s) 1000, 1056
BmuI ACTGGG 1 cut(s) 934
BpiI GAAGAC 3 cut(s) 281, 1119, 1182
BpmI CTGGAG 1 cut(s) 869
Bpu14I TTCGAA 1 cut(s) 523
BpuEI CTTGAG 1 cut(s) 697
BpuMI CCSGG 1 cut(s) 434
BsaBI GATNNNNATC 1 cut(s) 1151
BsaHI GRCGYC 1 cut(s) 310
BsaJI CCNNGG 4 cut(s) 452, 545, 726, 806
BsaXI ACNNNNNCTCC 2 cut(s) 1012, 1042
Bsc4I CCNNNNNNNGG 4 cut(s) 99, 545, 1085, 1125
Bse118I RCCGGY 2 cut(s) 744, 1159
Bse1I ACTGG 1 cut(s) 940
Bse3DI GCAATG 3 cut(s) 104, 462, 1034
Bse8I GATNNNNATC 1 cut(s) 1151
BseBI CCWGG 3 cut(s) 77, 546, 887
BseDI CCNNGG 4 cut(s) 452, 545, 726, 806
BseGI GGATG 3 cut(s) 72, 151, 1071
BseJI GATNNNNATC 1 cut(s) 1151
BseLI CCNNNNNNNGG 4 cut(s) 99, 545, 1085, 1125
BseMI GCAATG 3 cut(s) 104, 462, 1034
BseNI ACTGG 1 cut(s) 940
BseRI GAGGAG 1 cut(s) 313
BseSI GKGCMC 2 cut(s) 647, 919
BseXI GCAGC 4 cut(s) 55, 695, 965, 968
Bsh1236I CGCG 1 cut(s) 808
BshFI GGCC 5 cut(s) 363, 461, 773, 926, 1215
BsiHKAI GWGCWC 2 cut(s) 273, 919
BsiSI CCGG 3 cut(s) 434, 745, 1160
BslI CCNNNNNNNGG 4 cut(s) 99, 545, 1085, 1125
BsmAI GTCTC 3 cut(s) 118, 805, 1089
BsnI GGCC 5 cut(s) 363, 461, 773, 926, 1215
Bsp119I TTCGAA 1 cut(s) 523
Bsp1286I GDGCHC 3 cut(s) 273, 647, 919
Bsp143I GATC 4 cut(s) 199, 766, 831, 1152
BspACI CCGC 8 cut(s) 160, 163, 445, 458, 515, 806, 808, 1063
BspANI GGCC 5 cut(s) 363, 461, 773, 926, 1215
BspFNI CGCG 1 cut(s) 808
BspMI ACCTGC 1 cut(s) 1048
BspT104I TTCGAA 1 cut(s) 523
BsrDI GCAATG 3 cut(s) 104, 462, 1034
BsrFI RCCGGY 2 cut(s) 744, 1159
BsrI ACTGG 1 cut(s) 940
BssAI RCCGGY 2 cut(s) 744, 1159
BssECI CCNNGG 4 cut(s) 452, 545, 726, 806
BssMI GATC 4 cut(s) 199, 766, 831, 1152
BssNI GRCGYC 1 cut(s) 310
BssT1I CCWWGG 2 cut(s) 452, 726
Bst2UI CCWGG 3 cut(s) 77, 546, 887
Bst4CI ACNGT 2 cut(s) 603, 914
Bst6I CTCTTC 2 cut(s) 121, 1030
BstACI GRCGYC 1 cut(s) 310
BstAPI GCANNNNNTGC 1 cut(s) 1139
BstBI TTCGAA 1 cut(s) 523
BstC8I GCNNGC 3 cut(s) 449, 746, 1200
BstDEI CTNAG 2 cut(s) 284, 426
BstDSI CCRYGG 1 cut(s) 806
BstF5I GGATG 3 cut(s) 72, 151, 1071
BstFNI CGCG 1 cut(s) 808
BstH2I RGCGCY 1 cut(s) 433
BstHHI GCGC 1 cut(s) 432
BstKTI GATC 4 cut(s) 202, 769, 834, 1155
BstMAI GTCTC 3 cut(s) 118, 805, 1089
BstMBI GATC 4 cut(s) 199, 766, 831, 1152
BstMWI GCNNNNNNNGC 3 cut(s) 464, 923, 1139
BstNI CCWGG 3 cut(s) 77, 546, 887
BstNSI RCATGY 1 cut(s) 354
BstSCI CCNGG 4 cut(s) 75, 432, 544, 885
BstSFI CTRYAG 1 cut(s) 1209
BstSLI GKGCMC 2 cut(s) 647, 919
BstUI CGCG 1 cut(s) 808
BstV1I GCAGC 4 cut(s) 55, 695, 965, 968
BstV2I GAAGAC 3 cut(s) 281, 1119, 1182
BsuRI GGCC 5 cut(s) 363, 461, 773, 926, 1215
BtgI CCRYGG 1 cut(s) 806
BtsCI GGATG 3 cut(s) 72, 151, 1071
BtsIMutI CAGTG 1 cut(s) 647
BveI ACCTGC 1 cut(s) 1048
Cac8I GCNNGC 3 cut(s) 449, 746, 1200
CfoI GCGC 1 cut(s) 432
Cfr10I RCCGGY 2 cut(s) 744, 1159
Cfr42I CCGCGG 1 cut(s) 809
CseI GACGC 2 cut(s) 299, 1175
Csp6I GTAC 1 cut(s) 658
CviAII CATG 3 cut(s) 295, 351, 1156
CviQI GTAC 1 cut(s) 658
DdeI CTNAG 2 cut(s) 284, 426
DpnI GATC 4 cut(s) 201, 768, 833, 1154
DpnII GATC 4 cut(s) 199, 766, 831, 1152
EaeI YGGCCR 1 cut(s) 459
Eam1104I CTCTTC 2 cut(s) 121, 1030
EarI CTCTTC 2 cut(s) 121, 1030
Ecl136II GAGCTC 1 cut(s) 271
Eco130I CCWWGG 2 cut(s) 452, 726
Eco147I AGGCCT 1 cut(s) 773
Eco24I GRGCYC 1 cut(s) 273
Eco32I GATATC 1 cut(s) 379
Eco53kI GAGCTC 1 cut(s) 271
Eco57I CTGAAG 2 cut(s) 574, 1191
EcoICRI GAGCTC 1 cut(s) 271
EcoRII CCWGG 3 cut(s) 75, 544, 885
EcoRV GATATC 1 cut(s) 379
EcoT14I CCWWGG 2 cut(s) 452, 726
EcoT22I ATGCAT 1 cut(s) 352
EcoT38I GRGCYC 1 cut(s) 273
ErhI CCWWGG 2 cut(s) 452, 726
FaeI CATG 3 cut(s) 298, 354, 1159
FalI AAGNNNNNCTT 2 cut(s) 818, 850
FatI CATG 3 cut(s) 294, 350, 1155
FauI CCCGC 2 cut(s) 522, 801
FauNDI CATATG 1 cut(s) 1017
FbaI TGATCA 2 cut(s) 766, 1152
FblI GTMKAC 1 cut(s) 1191
Fnu4HI GCNGC 6 cut(s) 69, 163, 459, 709, 979, 982
FokI GGATG 3 cut(s) 59, 158, 1078
FriOI GRGCYC 1 cut(s) 273
Fsp4HI GCNGC 6 cut(s) 69, 163, 459, 709, 979, 982
FspBI CTAG 5 cut(s) 275, 486, 497, 920, 1203
GlaI GCGC 1 cut(s) 431
GluI GCNGC 6 cut(s) 69, 163, 459, 709, 979, 982
GsuI CTGGAG 1 cut(s) 869
HaeII RGCGCY 1 cut(s) 433
HaeIII GGCC 5 cut(s) 363, 461, 773, 926, 1215
HapII CCGG 3 cut(s) 434, 745, 1160
HgaI GACGC 2 cut(s) 299, 1175
HhaI GCGC 1 cut(s) 432
Hin1I GRCGYC 1 cut(s) 310
Hin1II CATG 3 cut(s) 298, 354, 1159
Hin6I GCGC 1 cut(s) 430
HinP1I GCGC 1 cut(s) 430
HincII GTYRAC 2 cut(s) 400, 855
HindII GTYRAC 2 cut(s) 400, 855
HinfI GANTC 7 cut(s) 51, 317, 500, 785, 812, 1072, 1115
HpaII CCGG 3 cut(s) 434, 745, 1160
HphI GGTGA 2 cut(s) 91, 795
Hpy166II GTNNAC 5 cut(s) 400, 855, 917, 1165, 1192
Hpy188I TCNGA 2 cut(s) 357, 593
Hpy188III TCNNGA 7 cut(s) 197, 248, 314, 752, 782, 835, 1007
Hpy8I GTNNAC 5 cut(s) 400, 855, 917, 1165, 1192
Hpy99I CGWCG 1 cut(s) 315
HpyAV CCTTC 8 cut(s) 20, 56, 65, 223, 598, 657, 784, 856
HpyCH4III ACNGT 2 cut(s) 603, 914
HpyCH4IV ACGT 1 cut(s) 519
HpyCH4V TGCA 7 cut(s) 350, 473, 599, 917, 1057, 1133, 1142
HpyF10VI GCNNNNNNNGC 3 cut(s) 464, 923, 1139
HpyF3I CTNAG 2 cut(s) 284, 426
HpySE526I ACGT 1 cut(s) 519
Hsp92I GRCGYC 1 cut(s) 310
Hsp92II CATG 3 cut(s) 298, 354, 1159
HspAI GCGC 1 cut(s) 430
KroI GCCGGC 1 cut(s) 744
KroNI GCCGGC 1 cut(s) 746
Ksp22I TGATCA 2 cut(s) 766, 1152
KspI CCGCGG 1 cut(s) 809
Kzo9I GATC 4 cut(s) 199, 766, 831, 1152
LmnI GCTCC 1 cut(s) 276
Lsp1109I GCAGC 4 cut(s) 55, 695, 965, 968
LweI GCATC 2 cut(s) 1000, 1056
MaeI CTAG 5 cut(s) 275, 486, 497, 920, 1203
MaeII ACGT 1 cut(s) 519
MaeIII GTNAC 3 cut(s) 182, 421, 505
MalI GATC 4 cut(s) 201, 768, 833, 1154
MboI GATC 4 cut(s) 199, 766, 831, 1152
MboII GAAGA 9 cut(s) 108, 281, 312, 946, 981, 1017, 1124, 1184, 1187
MhlI GDGCHC 3 cut(s) 273, 647, 919
MluCI AATT 5 cut(s) 133, 560, 890, 950, 1106
MlyI GAGTC 3 cut(s) 45, 509, 1109
MmeI TCCRAC 2 cut(s) 354, 563
MnlI CCTC 9 cut(s) 136, 204, 291, 294, 374, 893, 916, 1007, 1033
Mph1103I ATGCAT 1 cut(s) 352
MroNI GCCGGC 1 cut(s) 744
MseI TTAA 4 cut(s) 171, 482, 668, 735
MslI CAYNNNNRTG 2 cut(s) 77, 1160
MspA1I CMGCKG 1 cut(s) 808
MspI CCGG 3 cut(s) 434, 745, 1160
MspR9I CCNGG 4 cut(s) 77, 434, 546, 887
MvaI CCWGG 3 cut(s) 77, 546, 887
MvnI CGCG 1 cut(s) 808
MwoI GCNNNNNNNGC 3 cut(s) 464, 923, 1139
NaeI GCCGGC 1 cut(s) 746
NciI CCSGG 1 cut(s) 434
NdeI CATATG 1 cut(s) 1017
NdeII GATC 4 cut(s) 199, 766, 831, 1152
NgoMIV GCCGGC 1 cut(s) 744
NlaIII CATG 3 cut(s) 298, 354, 1159
NmuCI GTSAC 3 cut(s) 182, 421, 505
NsiI ATGCAT 1 cut(s) 352
NspI RCATGY 1 cut(s) 354
NspV TTCGAA 1 cut(s) 523
PaqCI CACCTGC 1 cut(s) 1048
PceI AGGCCT 1 cut(s) 773
PdiI GCCGGC 1 cut(s) 746
PfeI GAWTC 4 cut(s) 317, 785, 812, 1072
PflMI CCANNNNNTGG 2 cut(s) 99, 545
PfoI TCCNGGA 1 cut(s) 885
PkrI GCNGC 6 cut(s) 70, 164, 460, 710, 980, 983
PleI GAGTC 3 cut(s) 45, 508, 1109
PpsI GAGTC 3 cut(s) 45, 508, 1109
Psp124BI GAGCTC 1 cut(s) 273
Psp6I CCWGG 3 cut(s) 75, 544, 885
PspGI CCWGG 3 cut(s) 75, 544, 885
RsaI GTAC 1 cut(s) 659
RsaNI GTAC 1 cut(s) 658
RseI CAYNNNNRTG 2 cut(s) 77, 1160
SacI GAGCTC 1 cut(s) 273
SacII CCGCGG 1 cut(s) 809
SaqAI TTAA 4 cut(s) 171, 482, 668, 735
SatI GCNGC 6 cut(s) 69, 163, 459, 709, 979, 982
Sau3AI GATC 4 cut(s) 199, 766, 831, 1152
SchI GAGTC 3 cut(s) 45, 509, 1109
ScrFI CCNGG 4 cut(s) 77, 434, 546, 887
SduI GDGCHC 3 cut(s) 273, 647, 919
SfaNI GCATC 2 cut(s) 1000, 1056
SfcI CTRYAG 1 cut(s) 1209
Sfr303I CCGCGG 1 cut(s) 809
SfuI TTCGAA 1 cut(s) 523
SgrBI CCGCGG 1 cut(s) 809
SmiMI CAYNNNNRTG 2 cut(s) 77, 1160
SmlI CTYRAG 1 cut(s) 712
SmoI CTYRAG 1 cut(s) 712
SpeI ACTAGT 1 cut(s) 485
Sse9I AATT 5 cut(s) 133, 560, 890, 950, 1106
SseBI AGGCCT 1 cut(s) 773
SsiI CCGC 8 cut(s) 160, 163, 445, 458, 515, 806, 808, 1063
SspMI CTAG 5 cut(s) 275, 486, 497, 920, 1203
SstI GAGCTC 1 cut(s) 273
StuI AGGCCT 1 cut(s) 773
StyD4I CCNGG 4 cut(s) 75, 432, 544, 885
StyI CCWWGG 2 cut(s) 452, 726
TaaI ACNGT 2 cut(s) 603, 914
TaiI ACGT 1 cut(s) 522
TaqI TCGA 7 cut(s) 49, 313, 523, 654, 680, 760, 957
TaqII GACCGA 1 cut(s) 170
TasI AATT 5 cut(s) 133, 560, 890, 950, 1106
TauI GCSGC 2 cut(s) 165, 461
TfiI GAWTC 4 cut(s) 317, 785, 812, 1072
Tru1I TTAA 4 cut(s) 171, 482, 668, 735
Tru9I TTAA 4 cut(s) 171, 482, 668, 735
TscAI CASTG 1 cut(s) 647
TseFI GTSAC 3 cut(s) 182, 421, 505
TseI GCWGC 4 cut(s) 68, 708, 978, 981
Tsp45I GTSAC 3 cut(s) 182, 421, 505
TspDTI ATGAA 2 cut(s) 108, 205
TspGWI ACGGA 1 cut(s) 558
TspRI CASTG 1 cut(s) 647
Van91I CCANNNNNTGG 2 cut(s) 99, 545
VneI GTGCAC 1 cut(s) 915
XapI RAATTY 3 cut(s) 133, 560, 890
XceI RCATGY 1 cut(s) 354
XmiI GTMKAC 1 cut(s) 1191
XspI CTAG 5 cut(s) 275, 486, 497, 920, 1203
Zsp2I ATGCAT 1 cut(s) 352
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.