Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8426117.1

Orthogroup ID

OG0004540

Physical Location & Seq

Genomic Coordinates Forward (+)

761 .. 1453

Gene Structure 693 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8426117.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

atggccgtcaacgtattgggatcaccgcacaaaatgcctcaccttcatgacttaccggaccttgttattgacaaaatccttgggtttcttcctactaaagctgccgtccaggctacctttctttccaagcaatctccagtttcttcagcgtctgcactaaatttcgacgagcctgatgattttcgacgtcacaaccccaatggtccctttgccaacctatgccaacacaagaagttcatcaacttcttgaaagggtatctagaatatcataagacatatgagaagaaagaggtcctagattcactaaggcttcatatacatttttatttctgtcgagatgctactgtcattgataggtggctggaacgtgcaattaatagaggtctcaaagaattagatattagcccacgacaaataactattatccatggagaaatagtggtggaagccgaaaaactgtatcgcttaccttgggtatcctttgctaataatgcacaatctcttactagtctaaatctggagtatgttaggatggcagacatccaaagtgcaaaacttcaaagggatgagaagtaccttcttccctccttaaaaaccatgtccttcgaatgtgtgtggtttgatgacaaagctttcttctccttactattggagtgcccttccatcaagtatttgtcactgaccggctgcaca

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box

Protein Analysis

231

Amino Acids

26.63

Weight (kDa)

7.69

Isoelectric Point (pI)

52.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004540)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g33180 FvH4_4g33210 FvH4_4g33310 FvH4_4g33501
rosa_chinensis	RchiOBHm_Chr4g0442321 RchiOBHm_Chr4g0442821 RchiOBHm_Chr4g0442851 RchiOBHm_Chr4g0442941
rosa_multiflora	Rmu_co8426117.1_g000001 Rmu_sc0000124.1_g000038 Rmu_sc0000124.1_g000050 Rmu_sc0000124.1_g000054 Rmu_sc0007295.1_g000003 Rmu_sc0041664.1_g000001 Rmu_ssc0000204.1_g000015 Rmu_ssc0000204.1_g000016 Rmu_ssc0000204.1_g000050 Rmu_ssc0000204.1_g000053 Rmu_ssc0000204.1_g000057
rosa_roxburghii	Rroxscaffold_5G00383340 Rroxscaffold_5G00383620
rosa_rugosa	Rorug04G0343600
rosa_samantha	Rh4AG392000 Rh4AG393000 Rh4AG393300 Rh4AG396000 Rh4AG397300 Rh4BG406500
rosa_wichuraiana	Rw4G033860 Rw4G033950 Rw4G033970 Rw4G033980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	190
AciI	CCGC	1 cut(s)	26
AclWI	GGATC	1 cut(s)	28
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	160
AcuI	CTGAAG	1 cut(s)	129
AcyI	GRCGYC	1 cut(s)	187
AfaI	GTAC	1 cut(s)	575
AgsI	TTSAA	2 cut(s)	250, 560
AhlI	ACTAGT	1 cut(s)	506
AjnI	CCWGG	1 cut(s)	108
AluBI	AGCT	2 cut(s)	101, 632
AluI	AGCT	2 cut(s)	101, 632
Alw26I	GTCTC	1 cut(s)	389
AlwI	GGATC	1 cut(s)	28
AlwNI	CAGNNNCTG	1 cut(s)	152
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	2 cut(s)	101, 687
ApoI	RAATTY	1 cut(s)	160
AseI	ATTAAT	1 cut(s)	375
AspS9I	GGNCC	3 cut(s)	58, 203, 292
AsuHPI	GGTGA	2 cut(s)	15, 32
AsuII	TTCGAA	1 cut(s)	606
AvaII	GGWCC	3 cut(s)	58, 203, 292
BaeGI	GKGCMC	1 cut(s)	659
BbvI	GCAGC	2 cut(s)	88, 674
BccI	CCATC	2 cut(s)	526, 671
BceAI	ACGGC	1 cut(s)	89
BciT130I	CCWGG	1 cut(s)	110
BciVI	GTATCC	1 cut(s)	487
BcoDI	GTCTC	1 cut(s)	389
BcuI	ACTAGT	1 cut(s)	506
BfaI	CTAG	3 cut(s)	260, 296, 507
BfuI	GTATCC	1 cut(s)	487
BglI	GCCNNNNNGGC	1 cut(s)	110
BisI	GCNGC	2 cut(s)	102, 688
BlsI	GCNGC	2 cut(s)	103, 689
Bme1390I	CCNGG	1 cut(s)	110
Bme18I	GGWCC	3 cut(s)	58, 203, 292
BmgT120I	GGNCC	3 cut(s)	58, 203, 292
BmiI	GGNNCC	1 cut(s)	205
BmrFI	CCNGG	1 cut(s)	110
BmsI	GCATC	1 cut(s)	328
BpmI	CTGGAG	2 cut(s)	120, 539
Bpu14I	TTCGAA	1 cut(s)	606
BsaHI	GRCGYC	1 cut(s)	187
BsaI	GGTCTC	1 cut(s)	389
BsaJI	CCNNGG	3 cut(s)	79, 427, 470
BsaWI	WCCGGW	1 cut(s)	55
BsaXI	ACNNNNNCTCC	2 cut(s)	423, 453
Bse118I	RCCGGY	1 cut(s)	683
Bse1I	ACTGG	1 cut(s)	137
BseBI	CCWGG	1 cut(s)	110
BseDI	CCNNGG	3 cut(s)	79, 427, 470
BseGI	GGATG	3 cut(s)	537, 540, 571
BseNI	ACTGG	1 cut(s)	137
BseSI	GKGCMC	1 cut(s)	659
BseXI	GCAGC	2 cut(s)	88, 674
BsgI	GTGCAG	2 cut(s)	138, 673
BshFI	GGCC	1 cut(s)	5
BsiSI	CCGG	2 cut(s)	56, 684
BslFI	GGGAC	1 cut(s)	189
BsmAI	GTCTC	1 cut(s)	389
BsmFI	GGGAC	1 cut(s)	189
BsnI	GGCC	1 cut(s)	5
Bso31I	GGTCTC	1 cut(s)	389
Bsp119I	TTCGAA	1 cut(s)	606
Bsp1286I	GDGCHC	1 cut(s)	659
Bsp143I	GATC	1 cut(s)	20
Bsp19I	CCATGG	1 cut(s)	427
BspACI	CCGC	1 cut(s)	26
BspANI	GGCC	1 cut(s)	5
BspHI	TCATGA	1 cut(s)	46
BspLI	GGNNCC	1 cut(s)	205
BspPI	GGATC	1 cut(s)	28
BspT104I	TTCGAA	1 cut(s)	606
BspTNI	GGTCTC	1 cut(s)	389
BsrFI	RCCGGY	1 cut(s)	683
BsrI	ACTGG	1 cut(s)	137
BssAI	RCCGGY	1 cut(s)	683
BssECI	CCNNGG	3 cut(s)	79, 427, 470
BssMI	GATC	1 cut(s)	20
BssNI	GRCGYC	1 cut(s)	187
BssT1I	CCWWGG	3 cut(s)	79, 427, 470
Bst2UI	CCWGG	1 cut(s)	110
Bst4CI	ACNGT	2 cut(s)	346, 459
BstACI	GRCGYC	1 cut(s)	187
BstAPI	GCANNNNNTGC	1 cut(s)	34
BstBI	TTCGAA	1 cut(s)	606
BstDEI	CTNAG	1 cut(s)	305
BstDSI	CCRYGG	1 cut(s)	427
BstF5I	GGATG	3 cut(s)	537, 540, 571
BstKTI	GATC	1 cut(s)	23
BstMAI	GTCTC	1 cut(s)	389
BstMBI	GATC	1 cut(s)	20
BstMWI	GCNNNNNNNGC	3 cut(s)	34, 110, 491
BstNI	CCWGG	1 cut(s)	110
BstSCI	CCNGG	1 cut(s)	108
BstSLI	GKGCMC	1 cut(s)	659
BstV1I	GCAGC	2 cut(s)	88, 674
BsuI	GTATCC	1 cut(s)	487
BsuRI	GGCC	1 cut(s)	5
BtgI	CCRYGG	1 cut(s)	427
BtsCI	GGATG	3 cut(s)	537, 540, 571
BtsIMutI	CAGTG	1 cut(s)	677
CaiI	CAGNNNCTG	1 cut(s)	152
CciI	TCATGA	1 cut(s)	46
Cfr10I	RCCGGY	1 cut(s)	683
Cfr13I	GGNCC	3 cut(s)	58, 203, 292
CseI	GACGC	1 cut(s)	138
Csp6I	GTAC	1 cut(s)	574
CviAII	CATG	3 cut(s)	47, 428, 598
CviQI	GTAC	1 cut(s)	574
DdeI	CTNAG	1 cut(s)	305
DpnI	GATC	1 cut(s)	22
DpnII	GATC	1 cut(s)	20
EaeI	YGGCCR	1 cut(s)	3
Eco130I	CCWWGG	3 cut(s)	79, 427, 470
Eco31I	GGTCTC	1 cut(s)	389
Eco47I	GGWCC	3 cut(s)	58, 203, 292
Eco57I	CTGAAG	1 cut(s)	129
EcoO109I	RGGNCCY	1 cut(s)	292
EcoRII	CCWGG	1 cut(s)	108
EcoT14I	CCWWGG	3 cut(s)	79, 427, 470
ErhI	CCWWGG	3 cut(s)	79, 427, 470
FaeI	CATG	3 cut(s)	50, 431, 601
FaqI	GGGAC	1 cut(s)	189
FatI	CATG	3 cut(s)	46, 427, 597
FauNDI	CATATG	1 cut(s)	277
Fnu4HI	GCNGC	2 cut(s)	102, 688
FokI	GGATG	3 cut(s)	527, 544, 578
Fsp4HI	GCNGC	2 cut(s)	102, 688
FspBI	CTAG	3 cut(s)	260, 296, 507
GluI	GCNGC	2 cut(s)	102, 688
GsuI	CTGGAG	2 cut(s)	120, 539
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	2 cut(s)	56, 684
HgaI	GACGC	1 cut(s)	138
Hin1I	GRCGYC	1 cut(s)	187
Hin1II	CATG	3 cut(s)	50, 431, 601
HincII	GTYRAC	1 cut(s)	10
HindII	GTYRAC	1 cut(s)	10
HindIII	AAGCTT	1 cut(s)	630
HinfI	GANTC	1 cut(s)	299
HpaII	CCGG	2 cut(s)	56, 684
HphI	GGTGA	2 cut(s)	15, 32
Hpy166II	GTNNAC	1 cut(s)	10
Hpy188III	TCNNGA	5 cut(s)	47, 247, 260, 335, 518
Hpy8I	GTNNAC	1 cut(s)	10
Hpy99I	CGWCG	2 cut(s)	170, 189
HpyAV	CCTTC	4 cut(s)	53, 587, 613, 669
HpyCH4III	ACNGT	2 cut(s)	346, 459
HpyCH4IV	ACGT	3 cut(s)	12, 187, 367
HpyCH4V	TGCA	5 cut(s)	155, 371, 494, 551, 690
HpyF10VI	GCNNNNNNNGC	3 cut(s)	34, 110, 491
HpyF3I	CTNAG	1 cut(s)	305
HpySE526I	ACGT	3 cut(s)	12, 187, 367
Hsp92I	GRCGYC	1 cut(s)	187
Hsp92II	CATG	3 cut(s)	50, 431, 601
Kzo9I	GATC	1 cut(s)	20
LpnPI	CCDG	7 cut(s)	69, 95, 122, 150, 186, 347, 503
Lsp1109I	GCAGC	2 cut(s)	88, 674
LweI	GCATC	1 cut(s)	328
MaeI	CTAG	3 cut(s)	260, 296, 507
MaeII	ACGT	3 cut(s)	12, 187, 367
MaeIII	GTNAC	2 cut(s)	188, 675
MalI	GATC	1 cut(s)	22
MboI	GATC	1 cut(s)	20
MboII	GAAGA	5 cut(s)	80, 135, 295, 572, 628
MhlI	GDGCHC	1 cut(s)	659
MluCI	AATT	3 cut(s)	160, 372, 392
MnlI	CCTC	4 cut(s)	48, 283, 374, 595
MseI	TTAA	2 cut(s)	375, 590
MslI	CAYNNNNRTG	1 cut(s)	45
MspI	CCGG	2 cut(s)	56, 684
MspR9I	CCNGG	1 cut(s)	110
MvaI	CCWGG	1 cut(s)	110
MwoI	GCNNNNNNNGC	3 cut(s)	34, 110, 491
NcoI	CCATGG	1 cut(s)	427
NdeI	CATATG	1 cut(s)	277
NdeII	GATC	1 cut(s)	20
NlaIII	CATG	3 cut(s)	50, 431, 601
NlaIV	GGNNCC	1 cut(s)	205
NmuCI	GTSAC	2 cut(s)	188, 675
NspV	TTCGAA	1 cut(s)	606
PagI	TCATGA	1 cut(s)	46
PfeI	GAWTC	1 cut(s)	299
PkrI	GCNGC	2 cut(s)	103, 689
PpuMI	RGGWCCY	1 cut(s)	292
PshBI	ATTAAT	1 cut(s)	375
Psp5II	RGGWCCY	1 cut(s)	292
Psp6I	CCWGG	1 cut(s)	108
PspGI	CCWGG	1 cut(s)	108
PspN4I	GGNNCC	1 cut(s)	205
PspPI	GGNCC	3 cut(s)	58, 203, 292
PspPPI	RGGWCCY	1 cut(s)	292
PstNI	CAGNNNCTG	1 cut(s)	152
RsaI	GTAC	1 cut(s)	575
RsaNI	GTAC	1 cut(s)	574
RseI	CAYNNNNRTG	1 cut(s)	45
SaqAI	TTAA	2 cut(s)	375, 590
SatI	GCNGC	2 cut(s)	102, 688
Sau3AI	GATC	1 cut(s)	20
Sau96I	GGNCC	3 cut(s)	58, 203, 292
ScrFI	CCNGG	1 cut(s)	110
SduI	GDGCHC	1 cut(s)	659
SfaNI	GCATC	1 cut(s)	328
SfuI	TTCGAA	1 cut(s)	606
SinI	GGWCC	3 cut(s)	58, 203, 292
SmiMI	CAYNNNNRTG	1 cut(s)	45
SpeI	ACTAGT	1 cut(s)	506
Sse9I	AATT	3 cut(s)	160, 372, 392
SsiI	CCGC	1 cut(s)	26
SspMI	CTAG	3 cut(s)	260, 296, 507
StyD4I	CCNGG	1 cut(s)	108
StyI	CCWWGG	3 cut(s)	79, 427, 470
TaaI	ACNGT	2 cut(s)	346, 459
TaiI	ACGT	3 cut(s)	15, 190, 370
TaqI	TCGA	4 cut(s)	165, 184, 334, 606
TasI	AATT	3 cut(s)	160, 372, 392
TfiI	GAWTC	1 cut(s)	299
Tru1I	TTAA	2 cut(s)	375, 590
Tru9I	TTAA	2 cut(s)	375, 590
TscAI	CASTG	1 cut(s)	684
TseFI	GTSAC	2 cut(s)	188, 675
TseI	GCWGC	2 cut(s)	101, 687
Tsp45I	GTSAC	2 cut(s)	188, 675
TspDTI	ATGAA	3 cut(s)	35, 226, 302
TspRI	CASTG	1 cut(s)	684
VpaK11BI	GGWCC	3 cut(s)	58, 203, 292
VspI	ATTAAT	1 cut(s)	375
XapI	RAATTY	1 cut(s)	160
XbaI	TCTAGA	1 cut(s)	259
XspI	CTAG	3 cut(s)	260, 296, 507
ZraI	GACGTC	1 cut(s)	188

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.