Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002968.1

Orthogroup ID

OG0016907

Physical Location & Seq

Genomic Coordinates Forward (+)

148209 .. 148646

Gene Structure 438 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002968.1_g000031.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

atggacttcaaaggagagaaagggaacttgaaaagcaggccaaagatcgagcttgaattgaagcagagacaatttgattctcaaaggaaggctaagcatttggaacctacctctgctgctaaaaatgctagtgttgtttcatctacaagagatcaatcctggatcaacatggatggtagaagcttacagttggtcatgaatgagcaagtggaaaaaattgacttgacaggtagcggaatgtcagctgttctacaagcatcatcagaccccgcaaaattggtcttggattcaatgcaagggttttatccgtcaaatcttaatgtggaaaacagagagtttgagtcacattatcctcaggtgagagaagaagcagttaccgctgataatagttgggacttgggaggctttgggctttttgcgtcttatcactacgtatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04530 map04530

Pfam Domains

Protein Families

Frigida TEX13

Protein Analysis

145

Amino Acids

16.29

Weight (kDa)

5.62

Isoelectric Point (pI)

50.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016907)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g51361
rosa_chinensis	RchiOBHm_Chr2g0124201
rosa_multiflora	Rmu_sc0002968.1_g000031 Rmu_sc0002968.1_g000034
rosa_rugosa	Rorug02G0646300.1 Rorug04G0343600
rosa_samantha	Rh2AG308400 Rh2BG317400 Rh2CG295300 Rh2DG332400 Rh3AG047800 Rh3CG049200 Rh3DG050000 Rh4CG424600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	234, 270, 378
AclWI	GGATC	1 cut(s)	170
AgsI	TTSAA	5 cut(s)	10, 31, 56, 61, 291
AjnI	CCWGG	1 cut(s)	158
AluBI	AGCT	3 cut(s)	52, 183, 245
AluI	AGCT	3 cut(s)	52, 183, 245
Alw26I	GTCTC	1 cut(s)	61
AlwI	GGATC	1 cut(s)	170
AoxI	GGCC	1 cut(s)	38
ApeKI	GCWGC	1 cut(s)	116
AsuHPI	GGTGA	1 cut(s)	370
AxyI	CCTNAGG	1 cut(s)	354
BbvI	GCAGC	1 cut(s)	103
BccI	CCATC	1 cut(s)	167
BciT130I	CCWGG	1 cut(s)	160
BcoDI	GTCTC	1 cut(s)	61
BfaI	CTAG	1 cut(s)	129
BisI	GCNGC	1 cut(s)	117
BlpI	GCTNAGC	1 cut(s)	93
BlsI	GCNGC	1 cut(s)	118
Bme1390I	CCNGG	1 cut(s)	160
BmiI	GGNNCC	1 cut(s)	105
BmrFI	CCNGG	1 cut(s)	160
BmsI	GCATC	1 cut(s)	266
Bpu1102I	GCTNAGC	1 cut(s)	93
BsaAI	YACGTR	1 cut(s)	433
Bse21I	CCTNAGG	1 cut(s)	354
BseBI	CCWGG	1 cut(s)	160
BseGI	GGATG	1 cut(s)	178
BseMII	CTCAG	1 cut(s)	368
BseXI	GCAGC	1 cut(s)	103
BshFI	GGCC	1 cut(s)	40
BslFI	GGGAC	1 cut(s)	407
BsmAI	GTCTC	1 cut(s)	61
BsmFI	GGGAC	1 cut(s)	407
BsnI	GGCC	1 cut(s)	40
Bsp143I	GATC	3 cut(s)	45, 151, 162
Bsp1720I	GCTNAGC	1 cut(s)	93
BspACI	CCGC	3 cut(s)	234, 270, 378
BspANI	GGCC	1 cut(s)	40
BspCNI	CTCAG	1 cut(s)	367
BspHI	TCATGA	1 cut(s)	195
BspLI	GGNNCC	1 cut(s)	105
BspPI	GGATC	1 cut(s)	170
BssMI	GATC	3 cut(s)	45, 151, 162
Bst2UI	CCWGG	1 cut(s)	160
Bst4CI	ACNGT	1 cut(s)	189
BstBAI	YACGTR	1 cut(s)	433
BstC8I	GCNNGC	1 cut(s)	38
BstDEI	CTNAG	2 cut(s)	93, 354
BstF5I	GGATG	1 cut(s)	178
BstKTI	GATC	3 cut(s)	48, 154, 165
BstMAI	GTCTC	1 cut(s)	61
BstMBI	GATC	3 cut(s)	45, 151, 162
BstMWI	GCNNNNNNNGC	2 cut(s)	125, 377
BstNI	CCWGG	1 cut(s)	160
BstSCI	CCNGG	1 cut(s)	158
BstSNI	TACGTA	1 cut(s)	433
BstV1I	GCAGC	1 cut(s)	103
Bsu36I	CCTNAGG	1 cut(s)	354
BsuRI	GGCC	1 cut(s)	40
BtsCI	GGATG	1 cut(s)	178
Cac8I	GCNNGC	1 cut(s)	38
CciI	TCATGA	1 cut(s)	195
CseI	GACGC	1 cut(s)	408
CviAII	CATG	2 cut(s)	169, 196
CviJI	RGCY	7 cut(s)	40, 52, 92, 183, 245, 405, 412
CviKI_1	RGCY	7 cut(s)	40, 52, 92, 183, 245, 405, 412
DdeI	CTNAG	2 cut(s)	93, 354
DpnI	GATC	3 cut(s)	47, 153, 164
DpnII	GATC	3 cut(s)	45, 151, 162
Eco105I	TACGTA	1 cut(s)	433
Eco81I	CCTNAGG	1 cut(s)	354
EcoRII	CCWGG	1 cut(s)	158
FaeI	CATG	2 cut(s)	172, 199
FaiI	YATR	3 cut(s)	170, 197, 436
FaqI	GGGAC	1 cut(s)	407
FatI	CATG	2 cut(s)	168, 195
FauI	CCCGC	1 cut(s)	277
Fnu4HI	GCNGC	1 cut(s)	117
FokI	GGATG	1 cut(s)	185
Fsp4HI	GCNGC	1 cut(s)	117
FspBI	CTAG	1 cut(s)	129
GluI	GCNGC	1 cut(s)	117
HaeIII	GGCC	1 cut(s)	40
HgaI	GACGC	1 cut(s)	408
Hin1II	CATG	2 cut(s)	172, 199
HindIII	AAGCTT	1 cut(s)	181
HinfI	GANTC	3 cut(s)	77, 287, 341
HphI	GGTGA	1 cut(s)	370
Hpy188I	TCNGA	1 cut(s)	265
Hpy188III	TCNNGA	1 cut(s)	196
HpyAV	CCTTC	1 cut(s)	82
HpyCH4III	ACNGT	1 cut(s)	189
HpyCH4IV	ACGT	1 cut(s)	432
HpyCH4V	TGCA	1 cut(s)	295
HpyF10VI	GCNNNNNNNGC	2 cut(s)	125, 377
HpyF3I	CTNAG	2 cut(s)	93, 354
HpySE526I	ACGT	1 cut(s)	432
Hsp92II	CATG	2 cut(s)	172, 199
Kzo9I	GATC	3 cut(s)	45, 151, 162
LpnPI	CCDG	5 cut(s)	22, 145, 172, 213, 341
Lsp1109I	GCAGC	1 cut(s)	103
LweI	GCATC	1 cut(s)	266
MaeI	CTAG	1 cut(s)	129
MaeII	ACGT	1 cut(s)	432
MaeIII	GTNAC	2 cut(s)	342, 373
MalI	GATC	3 cut(s)	47, 153, 164
MboI	GATC	3 cut(s)	45, 151, 162
MboII	GAAGA	1 cut(s)	377
MluCI	AATT	4 cut(s)	56, 71, 216, 275
MlyI	GAGTC	1 cut(s)	350
MnlI	CCTC	3 cut(s)	121, 363, 395
MseI	TTAA	1 cut(s)	318
MspA1I	CMGCKG	2 cut(s)	245, 380
MspR9I	CCNGG	1 cut(s)	160
MvaI	CCWGG	1 cut(s)	160
MwoI	GCNNNNNNNGC	2 cut(s)	125, 377
NdeII	GATC	3 cut(s)	45, 151, 162
NlaIII	CATG	2 cut(s)	172, 199
NlaIV	GGNNCC	1 cut(s)	105
NmuCI	GTSAC	1 cut(s)	342
PagI	TCATGA	1 cut(s)	195
PfeI	GAWTC	2 cut(s)	77, 287
PfoI	TCCNGGA	1 cut(s)	158
PkrI	GCNGC	1 cut(s)	118
PleI	GAGTC	1 cut(s)	349
PpsI	GAGTC	1 cut(s)	349
Ppu21I	YACGTR	1 cut(s)	433
Psp6I	CCWGG	1 cut(s)	158
PspGI	CCWGG	1 cut(s)	158
PspN4I	GGNNCC	1 cut(s)	105
PvuII	CAGCTG	1 cut(s)	245
SaqAI	TTAA	1 cut(s)	318
SatI	GCNGC	1 cut(s)	117
Sau3AI	GATC	3 cut(s)	45, 151, 162
SchI	GAGTC	1 cut(s)	350
ScrFI	CCNGG	1 cut(s)	160
SetI	ASST	8 cut(s)	54, 109, 113, 185, 232, 247, 360, 435
SfaNI	GCATC	1 cut(s)	266
SnaBI	TACGTA	1 cut(s)	433
Sse9I	AATT	4 cut(s)	56, 71, 216, 275
SsiI	CCGC	3 cut(s)	234, 270, 378
SspMI	CTAG	1 cut(s)	129
StyD4I	CCNGG	1 cut(s)	158
TaaI	ACNGT	1 cut(s)	189
TaiI	ACGT	1 cut(s)	435
TaqI	TCGA	1 cut(s)	48
TasI	AATT	4 cut(s)	56, 71, 216, 275
TfiI	GAWTC	2 cut(s)	77, 287
Tru1I	TTAA	1 cut(s)	318
Tru9I	TTAA	1 cut(s)	318
TseFI	GTSAC	1 cut(s)	342
TseI	GCWGC	1 cut(s)	116
Tsp45I	GTSAC	1 cut(s)	342
TspDTI	ATGAA	2 cut(s)	129, 212
TspGWI	ACGGA	1 cut(s)	297
XspI	CTAG	1 cut(s)	129

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.