Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002968.1

Orthogroup ID

OG0016907

Physical Location & Seq

Genomic Coordinates Forward (+)

154838 .. 157037

Gene Structure 2200 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002968.1_g000034.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

atggacttcaaaggagagaaagggaacttgaaaagcaggccaaagatcgagcttgaattgaagcagagacaatttgattctcaaaggaaggctaagcatttggaacctacctctgctgctaaaaatgctagtgttgtttcatctacaagagatcaatcctggatcaacatggatggtagaagcttacagttggtcatgaatgagcaagtggaaaaaattgacttgacaggtagcggaatgtcagctgttctacaagcatcatcagaccccgcaaaattggtcttggattcaatgcaagggttttatccgtcaaatcttaatgtggaaaacagagagtttgagtcacattatcctcaggtgagagaagaagcagttaccgctgataatagttgggacttgggaggctttgggctttttgcgtcttatcactacgataaggctgtgaatggtaaaatagctgatctaagagctgccattcaatgcatcaaaaattacgacctcgagtctgaatacccgtccaagactgttgaattgcaaatagttcagcttgaaatgctgaaggaaaaatggaggagtttggctagtacccagagttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04530 map04530

Pfam Domains

Protein Families

Frigida TEX13

Protein Analysis

198

Amino Acids

22.32

Weight (kDa)

5.71

Isoelectric Point (pI)

48.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016907)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g51361
rosa_chinensis	RchiOBHm_Chr2g0124201
rosa_multiflora	Rmu_sc0002968.1_g000031 Rmu_sc0002968.1_g000034
rosa_rugosa	Rorug02G0646300.1 Rorug04G0343600
rosa_samantha	Rh2AG308400 Rh2BG317400 Rh2CG295300 Rh2DG332400 Rh3AG047800 Rh3CG049200 Rh3DG050000 Rh4CG424600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	234, 270, 378
AclWI	GGATC	1 cut(s)	170
AcuI	CTGAAG	1 cut(s)	578
AfaI	GTAC	1 cut(s)	586
AgsI	TTSAA	8 cut(s)	10, 31, 56, 61, 291, 479, 530, 551
AhdI	GACNNNNNGTC	1 cut(s)	502
AjnI	CCWGG	1 cut(s)	158
AluBI	AGCT	6 cut(s)	52, 183, 245, 458, 470, 547
AluI	AGCT	6 cut(s)	52, 183, 245, 458, 470, 547
Alw26I	GTCTC	1 cut(s)	61
AlwI	GGATC	1 cut(s)	170
Ama87I	CYCGRG	1 cut(s)	500
AoxI	GGCC	1 cut(s)	38
ApeKI	GCWGC	2 cut(s)	116, 470
AsuHPI	GGTGA	1 cut(s)	370
AvaI	CYCGRG	1 cut(s)	500
AxyI	CCTNAGG	1 cut(s)	354
BbvI	GCAGC	2 cut(s)	103, 457
BccI	CCATC	1 cut(s)	167
BciT130I	CCWGG	1 cut(s)	160
BcoDI	GTCTC	1 cut(s)	61
BfaI	CTAG	2 cut(s)	129, 582
BisI	GCNGC	2 cut(s)	117, 471
BlpI	GCTNAGC	1 cut(s)	93
BlsI	GCNGC	2 cut(s)	118, 472
Bme1390I	CCNGG	1 cut(s)	160
BmeRI	GACNNNNNGTC	1 cut(s)	502
BmeT110I	CYCGRG	1 cut(s)	500
BmiI	GGNNCC	1 cut(s)	105
BmrFI	CCNGG	1 cut(s)	160
BmsI	GCATC	2 cut(s)	266, 492
Bpu1102I	GCTNAGC	1 cut(s)	93
Bse21I	CCTNAGG	1 cut(s)	354
BseBI	CCWGG	1 cut(s)	160
BseGI	GGATG	1 cut(s)	178
BseMII	CTCAG	1 cut(s)	368
BseRI	GAGGAG	1 cut(s)	586
BseXI	GCAGC	2 cut(s)	103, 457
BshFI	GGCC	1 cut(s)	40
BsiHKCI	CYCGRG	1 cut(s)	500
BslFI	GGGAC	1 cut(s)	407
BsmAI	GTCTC	1 cut(s)	61
BsmFI	GGGAC	1 cut(s)	407
BsnI	GGCC	1 cut(s)	40
BsoBI	CYCGRG	1 cut(s)	500
Bsp143I	GATC	4 cut(s)	45, 151, 162, 460
Bsp1720I	GCTNAGC	1 cut(s)	93
BspACI	CCGC	3 cut(s)	234, 270, 378
BspANI	GGCC	1 cut(s)	40
BspCNI	CTCAG	1 cut(s)	367
BspHI	TCATGA	1 cut(s)	195
BspLI	GGNNCC	1 cut(s)	105
BspPI	GGATC	1 cut(s)	170
BssMI	GATC	4 cut(s)	45, 151, 162, 460
Bst2UI	CCWGG	1 cut(s)	160
Bst4CI	ACNGT	2 cut(s)	189, 526
BstC8I	GCNNGC	1 cut(s)	38
BstDEI	CTNAG	3 cut(s)	93, 354, 464
BstF5I	GGATG	1 cut(s)	178
BstKTI	GATC	4 cut(s)	48, 154, 165, 463
BstMAI	GTCTC	1 cut(s)	61
BstMBI	GATC	4 cut(s)	45, 151, 162, 460
BstMWI	GCNNNNNNNGC	3 cut(s)	125, 377, 553
BstNI	CCWGG	1 cut(s)	160
BstSCI	CCNGG	1 cut(s)	158
BstV1I	GCAGC	2 cut(s)	103, 457
Bsu36I	CCTNAGG	1 cut(s)	354
BsuRI	GGCC	1 cut(s)	40
BtsCI	GGATG	1 cut(s)	178
Cac8I	GCNNGC	1 cut(s)	38
CciI	TCATGA	1 cut(s)	195
CseI	GACGC	1 cut(s)	408
Csp6I	GTAC	1 cut(s)	585
CviAII	CATG	2 cut(s)	169, 196
CviQI	GTAC	1 cut(s)	585
DdeI	CTNAG	3 cut(s)	93, 354, 464
DpnI	GATC	4 cut(s)	47, 153, 164, 462
DpnII	GATC	4 cut(s)	45, 151, 162, 460
DriI	GACNNNNNGTC	1 cut(s)	502
Eam1105I	GACNNNNNGTC	1 cut(s)	502
Eco57I	CTGAAG	1 cut(s)	578
Eco81I	CCTNAGG	1 cut(s)	354
Eco88I	CYCGRG	1 cut(s)	500
EcoRII	CCWGG	1 cut(s)	158
EcoT22I	ATGCAT	1 cut(s)	485
FaeI	CATG	2 cut(s)	172, 199
FaiI	YATR	2 cut(s)	170, 197
FaqI	GGGAC	1 cut(s)	407
FatI	CATG	2 cut(s)	168, 195
FauI	CCCGC	1 cut(s)	277
Fnu4HI	GCNGC	2 cut(s)	117, 471
FokI	GGATG	1 cut(s)	185
Fsp4HI	GCNGC	2 cut(s)	117, 471
FspBI	CTAG	2 cut(s)	129, 582
GluI	GCNGC	2 cut(s)	117, 471
HaeIII	GGCC	1 cut(s)	40
HgaI	GACGC	1 cut(s)	408
Hin1II	CATG	2 cut(s)	172, 199
HindIII	AAGCTT	1 cut(s)	181
HinfI	GANTC	4 cut(s)	77, 287, 341, 503
HphI	GGTGA	1 cut(s)	370
Hpy188I	TCNGA	2 cut(s)	265, 508
Hpy188III	TCNNGA	1 cut(s)	196
HpyAV	CCTTC	2 cut(s)	82, 553
HpyCH4III	ACNGT	2 cut(s)	189, 526
HpyCH4V	TGCA	3 cut(s)	295, 483, 535
HpyF10VI	GCNNNNNNNGC	3 cut(s)	125, 377, 553
HpyF3I	CTNAG	3 cut(s)	93, 354, 464
Hsp92II	CATG	2 cut(s)	172, 199
Kzo9I	GATC	4 cut(s)	45, 151, 162, 460
LpnPI	CCDG	5 cut(s)	22, 145, 172, 213, 341
Lsp1109I	GCAGC	2 cut(s)	103, 457
LweI	GCATC	2 cut(s)	266, 492
MaeI	CTAG	2 cut(s)	129, 582
MaeIII	GTNAC	2 cut(s)	342, 373
MalI	GATC	4 cut(s)	47, 153, 164, 462
MboI	GATC	4 cut(s)	45, 151, 162, 460
MboII	GAAGA	1 cut(s)	377
MluCI	AATT	6 cut(s)	56, 71, 216, 275, 490, 530
MlyI	GAGTC	2 cut(s)	350, 512
MnlI	CCTC	5 cut(s)	121, 363, 395, 509, 564
Mph1103I	ATGCAT	1 cut(s)	485
MseI	TTAA	1 cut(s)	318
MspA1I	CMGCKG	2 cut(s)	245, 380
MspR9I	CCNGG	1 cut(s)	160
MvaI	CCWGG	1 cut(s)	160
MwoI	GCNNNNNNNGC	3 cut(s)	125, 377, 553
NdeII	GATC	4 cut(s)	45, 151, 162, 460
NlaIII	CATG	2 cut(s)	172, 199
NlaIV	GGNNCC	1 cut(s)	105
NmuCI	GTSAC	1 cut(s)	342
NsiI	ATGCAT	1 cut(s)	485
PaeR7I	CTCGAG	1 cut(s)	500
PagI	TCATGA	1 cut(s)	195
PfeI	GAWTC	2 cut(s)	77, 287
PfoI	TCCNGGA	1 cut(s)	158
PkrI	GCNGC	2 cut(s)	118, 472
PleI	GAGTC	2 cut(s)	349, 511
PpsI	GAGTC	2 cut(s)	349, 511
Psp6I	CCWGG	1 cut(s)	158
PspGI	CCWGG	1 cut(s)	158
PspN4I	GGNNCC	1 cut(s)	105
PspXI	VCTCGAGB	1 cut(s)	500
PvuII	CAGCTG	1 cut(s)	245
RsaI	GTAC	1 cut(s)	586
RsaNI	GTAC	1 cut(s)	585
SaqAI	TTAA	1 cut(s)	318
SatI	GCNGC	2 cut(s)	117, 471
Sau3AI	GATC	4 cut(s)	45, 151, 162, 460
SchI	GAGTC	2 cut(s)	350, 512
ScrFI	CCNGG	1 cut(s)	160
SfaNI	GCATC	2 cut(s)	266, 492
Sfr274I	CTCGAG	1 cut(s)	500
SlaI	CTCGAG	1 cut(s)	500
SmlI	CTYRAG	1 cut(s)	500
SmoI	CTYRAG	1 cut(s)	500
Sse9I	AATT	6 cut(s)	56, 71, 216, 275, 490, 530
SsiI	CCGC	3 cut(s)	234, 270, 378
SspMI	CTAG	2 cut(s)	129, 582
StyD4I	CCNGG	1 cut(s)	158
TaaI	ACNGT	2 cut(s)	189, 526
TaqI	TCGA	2 cut(s)	48, 501
TasI	AATT	6 cut(s)	56, 71, 216, 275, 490, 530
TfiI	GAWTC	2 cut(s)	77, 287
Tru1I	TTAA	1 cut(s)	318
Tru9I	TTAA	1 cut(s)	318
TseFI	GTSAC	1 cut(s)	342
TseI	GCWGC	2 cut(s)	116, 470
Tsp45I	GTSAC	1 cut(s)	342
TspDTI	ATGAA	2 cut(s)	129, 212
TspGWI	ACGGA	1 cut(s)	297
XhoI	CTCGAG	1 cut(s)	500
XspI	CTAG	2 cut(s)	129, 582
Zsp2I	ATGCAT	1 cut(s)	485

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.