FvH4_6g52430
MYB Family

Myb-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0008779
Physical Location & Seq
Reverse (-)
38617345 .. 38618731
1387 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g52430.t4

Sequence Viewer

Length: 321 bp
ATGACTGTAAAAATAAAAAGCCTCAAAACAAAACATGGGTCGGACTCCGACCCGATTCACACACTGCAAAAGCAACCAGGCCCTGATAGAAACTCCAGAATCAACCAAAAGAAACGAAAAATGCAAGCGCTCCAGAGAGCGGTCCGGCGGTTCCACGCCACCGCCGGTGCTCCGCCGCTCACCAGATTTTCTCTCCACGCGCCTAAATGTGTAGAGGTGGAGTTTGGCAATGGGAGTGTGTTCAATTTGTCAGCTGAATTCTTAAGAGTTCACAGTCCAGCTGTTGATGCCAAGATTAGGTCCATTGCTGGTGAAAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

107

Amino Acids

11.77

Weight (kDa)

10.8

Isoelectric Point (pI)

40.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 2 cut(s) 140, 178
AccII CGCG 1 cut(s) 200
AciI CCGC 5 cut(s) 140, 148, 162, 173, 176
AcsI RAATTY 1 cut(s) 257
AfeI AGCGCT 1 cut(s) 129
AfiI CCNNNNNNNGG 2 cut(s) 139, 297
AflII CTTAAG 1 cut(s) 262
AgsI TTSAA 1 cut(s) 244
AjnI CCWGG 1 cut(s) 76
AluBI AGCT 2 cut(s) 254, 281
AluI AGCT 2 cut(s) 254, 281
Alw21I GWGCWC 1 cut(s) 172
AlwNI CAGNNNCTG 1 cut(s) 83
Aor51HI AGCGCT 1 cut(s) 129
AoxI GGCC 1 cut(s) 79
ApoI RAATTY 1 cut(s) 257
ArsI GACNNNNNNTTYG 2 cut(s) 23, 55
AspLEI GCGC 2 cut(s) 130, 202
AspS9I GGNCC 3 cut(s) 80, 142, 300
AsuHPI GGTGA 1 cut(s) 172
AvaII GGWCC 2 cut(s) 142, 300
Bbv12I GWGCWC 1 cut(s) 172
BciT130I CCWGG 1 cut(s) 78
BfoI RGCGCY 1 cut(s) 131
BfrI CTTAAG 1 cut(s) 262
BisI GCNGC 1 cut(s) 176
BlsI GCNGC 1 cut(s) 177
Bme1390I CCNGG 1 cut(s) 78
Bme18I GGWCC 2 cut(s) 142, 300
BmgT120I GGNCC 3 cut(s) 80, 142, 300
BmiI GGNNCC 1 cut(s) 152
BmrFI CCNGG 1 cut(s) 78
BmsI GCATC 1 cut(s) 277
BpmI CTGGAG 2 cut(s) 79, 116
Bsc4I CCNNNNNNNGG 2 cut(s) 139, 297
Bse118I RCCGGY 1 cut(s) 164
Bse3DI GCAATG 2 cut(s) 235, 303
BseBI CCWGG 1 cut(s) 78
BseLI CCNNNNNNNGG 2 cut(s) 139, 297
BseMI GCAATG 2 cut(s) 235, 303
Bsh1236I CGCG 1 cut(s) 200
BshFI GGCC 1 cut(s) 81
BsiHKAI GWGCWC 1 cut(s) 172
BsiSI CCGG 2 cut(s) 145, 165
BslI CCNNNNNNNGG 2 cut(s) 139, 297
BsnI GGCC 1 cut(s) 81
Bsp1286I GDGCHC 1 cut(s) 172
BspACI CCGC 5 cut(s) 140, 148, 162, 173, 176
BspANI GGCC 1 cut(s) 81
BspFNI CGCG 1 cut(s) 200
BspLI GGNNCC 1 cut(s) 152
BspTI CTTAAG 1 cut(s) 262
BsrBI CCGCTC 2 cut(s) 140, 178
BsrDI GCAATG 2 cut(s) 235, 303
BsrFI RCCGGY 1 cut(s) 164
BssAI RCCGGY 1 cut(s) 164
Bst2UI CCWGG 1 cut(s) 78
Bst4CI ACNGT 2 cut(s) 7, 275
BstAFI CTTAAG 1 cut(s) 262
BstC8I GCNNGC 1 cut(s) 126
BstFNI CGCG 1 cut(s) 200
BstH2I RGCGCY 1 cut(s) 131
BstHHI GCGC 2 cut(s) 130, 202
BstMWI GCNNNNNNNGC 1 cut(s) 287
BstNI CCWGG 1 cut(s) 78
BstSCI CCNGG 1 cut(s) 76
BstUI CGCG 1 cut(s) 200
BsuRI GGCC 1 cut(s) 81
BtsI GCAGTG 1 cut(s) 62
BtsIMutI CAGTG 1 cut(s) 62
Cac8I GCNNGC 1 cut(s) 126
CaiI CAGNNNCTG 1 cut(s) 83
CfoI GCGC 2 cut(s) 130, 202
Cfr10I RCCGGY 1 cut(s) 164
Cfr13I GGNCC 3 cut(s) 80, 142, 300
CpoI CGGWCCG 1 cut(s) 142
CspI CGGWCCG 1 cut(s) 142
CviAII CATG 1 cut(s) 35
CviJI RGCY 4 cut(s) 21, 81, 254, 281
CviKI_1 RGCY 4 cut(s) 21, 81, 254, 281
EciI GGCGGA 1 cut(s) 162
Eco47I GGWCC 2 cut(s) 142, 300
Eco47III AGCGCT 1 cut(s) 129
EcoO109I RGGNCCY 1 cut(s) 80
EcoRI GAATTC 1 cut(s) 257
EcoRII CCWGG 1 cut(s) 76
FaeI CATG 1 cut(s) 38
FaiI YATR 1 cut(s) 36
FatI CATG 1 cut(s) 34
Fnu4HI GCNGC 1 cut(s) 176
Fsp4HI GCNGC 1 cut(s) 176
GlaI GCGC 2 cut(s) 129, 201
GluI GCNGC 1 cut(s) 176
GsuI CTGGAG 2 cut(s) 79, 116
HaeII RGCGCY 1 cut(s) 131
HaeIII GGCC 1 cut(s) 81
HapII CCGG 2 cut(s) 145, 165
HhaI GCGC 2 cut(s) 130, 202
Hin1II CATG 1 cut(s) 38
Hin6I GCGC 2 cut(s) 128, 200
HinP1I GCGC 2 cut(s) 128, 200
HinfI GANTC 3 cut(s) 44, 55, 99
HpaII CCGG 2 cut(s) 145, 165
HphI GGTGA 1 cut(s) 172
Hpy166II GTNNAC 1 cut(s) 271
Hpy188I TCNGA 2 cut(s) 43, 49
Hpy188III TCNNGA 2 cut(s) 96, 133
Hpy8I GTNNAC 1 cut(s) 271
HpyCH4III ACNGT 2 cut(s) 7, 275
HpyCH4V TGCA 2 cut(s) 67, 124
HpyF10VI GCNNNNNNNGC 1 cut(s) 287
Hsp92II CATG 1 cut(s) 38
HspAI GCGC 2 cut(s) 128, 200
LmnI GCTCC 2 cut(s) 135, 175
LweI GCATC 1 cut(s) 277
MbiI CCGCTC 2 cut(s) 140, 178
MhlI GDGCHC 1 cut(s) 172
MluCI AATT 2 cut(s) 244, 257
MlyI GAGTC 1 cut(s) 38
MmeI TCCRAC 2 cut(s) 21, 72
MnlI CCTC 2 cut(s) 32, 208
MseI TTAA 1 cut(s) 263
MspA1I CMGCKG 2 cut(s) 254, 281
MspCI CTTAAG 1 cut(s) 262
MspI CCGG 2 cut(s) 145, 165
MspR9I CCNGG 1 cut(s) 78
MvaI CCWGG 1 cut(s) 78
MvnI CGCG 1 cut(s) 200
MwoI GCNNNNNNNGC 1 cut(s) 287
NlaIII CATG 1 cut(s) 38
NlaIV GGNNCC 1 cut(s) 152
PfeI GAWTC 2 cut(s) 55, 99
PkrI GCNGC 1 cut(s) 177
PleI GAGTC 1 cut(s) 38
PpsI GAGTC 1 cut(s) 38
Psp6I CCWGG 1 cut(s) 76
PspGI CCWGG 1 cut(s) 76
PspN4I GGNNCC 1 cut(s) 152
PspPI GGNCC 3 cut(s) 80, 142, 300
PstNI CAGNNNCTG 1 cut(s) 83
PvuII CAGCTG 2 cut(s) 254, 281
Rsr2I CGGWCCG 1 cut(s) 142
RsrII CGGWCCG 1 cut(s) 142
SaqAI TTAA 1 cut(s) 263
SatI GCNGC 1 cut(s) 176
Sau96I GGNCC 3 cut(s) 80, 142, 300
SchI GAGTC 1 cut(s) 38
ScrFI CCNGG 1 cut(s) 78
SduI GDGCHC 1 cut(s) 172
SetI ASST 4 cut(s) 219, 256, 283, 302
SfaNI GCATC 1 cut(s) 277
SgrAI CRCCGGYG 1 cut(s) 164
SinI GGWCC 2 cut(s) 142, 300
SmlI CTYRAG 1 cut(s) 262
SmoI CTYRAG 1 cut(s) 262
Sse9I AATT 2 cut(s) 244, 257
SsiI CCGC 5 cut(s) 140, 148, 162, 173, 176
StyD4I CCNGG 1 cut(s) 76
TaaI ACNGT 2 cut(s) 7, 275
TasI AATT 2 cut(s) 244, 257
TauI GCSGC 1 cut(s) 178
TfiI GAWTC 2 cut(s) 55, 99
Tru1I TTAA 1 cut(s) 263
Tru9I TTAA 1 cut(s) 263
TscAI CASTG 1 cut(s) 69
TspRI CASTG 1 cut(s) 69
Vha464I CTTAAG 1 cut(s) 262
VpaK11BI GGWCC 2 cut(s) 142, 300
XapI RAATTY 1 cut(s) 257
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.