MD09G1018100.v1.1
MYB Family

Myb-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
OG0008779
Physical Location & Seq
Forward (+)
1121194 .. 1122908
1715 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1018100.v1.1.491

Sequence Viewer

Length: 411 bp
ATGTCAGCGATTCAAACAGCGATTCGGAGGTTCCACGCCACCGCAAATGCTCCGAGGCTCACCAGATTCTCCCTCCACGCGCCCAAATGTGTAGAGGTGGAGTTTGGAAATGGAAATGTTTTCAATTTGTCAGCTGAGTTTCTGAGAATCCACAGCCCAGCTGTTGATGCCAAGATTAGGTCAATTGCTGGTGAAAAGGTGATATCTGGGCGGCGTCACGTCGGAATCATGTCTGCGGAACCTGTAGGAAACTATGGGGTAAGGATTGTTTTCGATGACTTACACAACACCGGAATCTATTCGTGGGATTACTTGTATCACTTGGGAAGCAACAAATTCAGCCTCATGAGAAATTATATCAAAACGCTCAACAAGTACGGGCTCAGGCGCGATCCACCTAGAAGAAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

137

Amino Acids

15.46

Weight (kDa)

10.32

Isoelectric Point (pI)

46.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GBBH-like_N PF06155 29 - 106 2.2e-20 Gamma-butyrobetaine hydroxylase-like, N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 80, 390
AciI CCGC 3 cut(s) 42, 211, 236
AclWI GGATC 1 cut(s) 386
AcsI RAATTY 1 cut(s) 335
AcyI GRCGYC 1 cut(s) 214
AfaI GTAC 1 cut(s) 377
AfiI CCNNNNNNNGG 1 cut(s) 177
AgsI TTSAA 2 cut(s) 14, 124
AjiI CACGTC 1 cut(s) 220
AluBI AGCT 2 cut(s) 134, 161
AluI AGCT 2 cut(s) 134, 161
AlwI GGATC 1 cut(s) 386
ApoI RAATTY 1 cut(s) 335
Asp700I GAANNNNTTC 1 cut(s) 298
AspLEI GCGC 2 cut(s) 82, 390
AsuHPI GGTGA 3 cut(s) 52, 203, 211
BanII GRGCYC 1 cut(s) 384
BfaI CTAG 1 cut(s) 399
BfmI CTRYAG 1 cut(s) 243
BisI GCNGC 1 cut(s) 212
BlsI GCNGC 1 cut(s) 213
BmgBI CACGTC 1 cut(s) 220
BmiI GGNNCC 2 cut(s) 32, 240
BmsI GCATC 1 cut(s) 157
Bpu10I CCTNAGC 1 cut(s) 383
BsaHI GRCGYC 1 cut(s) 214
BsaJI CCNNGG 1 cut(s) 53
BsaWI WCCGGW 1 cut(s) 290
Bsc4I CCNNNNNNNGG 1 cut(s) 177
BseDI CCNNGG 1 cut(s) 53
BseLI CCNNNNNNNGG 1 cut(s) 177
BseMII CTCAG 3 cut(s) 126, 134, 397
BseYI CCCAGC 1 cut(s) 157
Bsh1236I CGCG 2 cut(s) 80, 390
BsiSI CCGG 1 cut(s) 291
BslI CCNNNNNNNGG 1 cut(s) 177
Bsp1286I GDGCHC 1 cut(s) 384
Bsp143I GATC 1 cut(s) 391
BspACI CCGC 3 cut(s) 42, 211, 236
BspCNI CTCAG 3 cut(s) 127, 135, 396
BspFNI CGCG 2 cut(s) 80, 390
BspHI TCATGA 1 cut(s) 345
BspLI GGNNCC 2 cut(s) 32, 240
BspPI GGATC 1 cut(s) 386
BssECI CCNNGG 1 cut(s) 53
BssMI GATC 1 cut(s) 391
BssNI GRCGYC 1 cut(s) 214
BstACI GRCGYC 1 cut(s) 214
BstDEI CTNAG 3 cut(s) 135, 143, 383
BstFNI CGCG 2 cut(s) 80, 390
BstHHI GCGC 2 cut(s) 82, 390
BstKTI GATC 1 cut(s) 394
BstMBI GATC 1 cut(s) 391
BstMWI GCNNNNNNNGC 1 cut(s) 167
BstSFI CTRYAG 1 cut(s) 243
BstUI CGCG 2 cut(s) 80, 390
BtrI CACGTC 1 cut(s) 220
CciI TCATGA 1 cut(s) 345
CfoI GCGC 2 cut(s) 82, 390
CseI GACGC 1 cut(s) 203
Csp6I GTAC 1 cut(s) 376
CviAII CATG 2 cut(s) 229, 346
CviJI RGCY 6 cut(s) 58, 134, 156, 161, 342, 382
CviKI_1 RGCY 6 cut(s) 58, 134, 156, 161, 342, 382
CviQI GTAC 1 cut(s) 376
DdeI CTNAG 3 cut(s) 135, 143, 383
DpnI GATC 1 cut(s) 393
DpnII GATC 1 cut(s) 391
Eco24I GRGCYC 1 cut(s) 384
Eco32I GATATC 1 cut(s) 204
EcoRV GATATC 1 cut(s) 204
EcoT38I GRGCYC 1 cut(s) 384
FaeI CATG 2 cut(s) 232, 349
FaiI YATR 4 cut(s) 230, 255, 347, 357
FatI CATG 2 cut(s) 228, 345
Fnu4HI GCNGC 1 cut(s) 212
FriOI GRGCYC 1 cut(s) 384
Fsp4HI GCNGC 1 cut(s) 212
FspBI CTAG 1 cut(s) 399
GlaI GCGC 2 cut(s) 81, 389
GluI GCNGC 1 cut(s) 212
GsaI CCCAGC 1 cut(s) 161
HapII CCGG 1 cut(s) 291
HgaI GACGC 1 cut(s) 203
HhaI GCGC 2 cut(s) 82, 390
Hin1I GRCGYC 1 cut(s) 214
Hin1II CATG 2 cut(s) 232, 349
Hin6I GCGC 2 cut(s) 80, 388
HinP1I GCGC 2 cut(s) 80, 388
HinfI GANTC 6 cut(s) 10, 22, 66, 147, 225, 294
HpaII CCGG 1 cut(s) 291
HphI GGTGA 3 cut(s) 52, 203, 211
Hpy188I TCNGA 4 cut(s) 27, 54, 144, 224
Hpy188III TCNNGA 1 cut(s) 346
Hpy99I CGWCG 1 cut(s) 224
HpyCH4IV ACGT 1 cut(s) 219
HpyF10VI GCNNNNNNNGC 1 cut(s) 167
HpyF3I CTNAG 3 cut(s) 135, 143, 383
HpySE526I ACGT 1 cut(s) 219
Hsp92I GRCGYC 1 cut(s) 214
Hsp92II CATG 2 cut(s) 232, 349
HspAI GCGC 2 cut(s) 80, 388
Kzo9I GATC 1 cut(s) 391
LmnI GCTCC 1 cut(s) 55
LpnPI CCDG 7 cut(s) 76, 171, 174, 192, 255, 304, 370
LweI GCATC 1 cut(s) 157
MaeI CTAG 1 cut(s) 399
MaeII ACGT 1 cut(s) 219
MaeIII GTNAC 1 cut(s) 215
MalI GATC 1 cut(s) 393
MboI GATC 1 cut(s) 391
MfeI CAATTG 1 cut(s) 183
MhlI GDGCHC 1 cut(s) 384
MluCI AATT 4 cut(s) 124, 183, 335, 352
MmeI TCCRAC 1 cut(s) 202
MnlI CCTC 5 cut(s) 21, 48, 83, 88, 353
MroXI GAANNNNTTC 1 cut(s) 298
MspA1I CMGCKG 2 cut(s) 134, 161
MspI CCGG 1 cut(s) 291
MunI CAATTG 1 cut(s) 183
MvnI CGCG 2 cut(s) 80, 390
MwoI GCNNNNNNNGC 1 cut(s) 167
NdeII GATC 1 cut(s) 391
NlaIII CATG 2 cut(s) 232, 349
NlaIV GGNNCC 2 cut(s) 32, 240
NmuCI GTSAC 1 cut(s) 215
PagI TCATGA 1 cut(s) 345
PdmI GAANNNNTTC 1 cut(s) 298
PfeI GAWTC 6 cut(s) 10, 22, 66, 147, 225, 294
PkrI GCNGC 1 cut(s) 213
PspFI CCCAGC 1 cut(s) 157
PspN4I GGNNCC 2 cut(s) 32, 240
PvuII CAGCTG 2 cut(s) 134, 161
RsaI GTAC 1 cut(s) 377
RsaNI GTAC 1 cut(s) 376
SatI GCNGC 1 cut(s) 212
Sau3AI GATC 1 cut(s) 391
SduI GDGCHC 1 cut(s) 384
SetI ASST 9 cut(s) 32, 99, 136, 163, 182, 201, 222, 244, 400
SfaNI GCATC 1 cut(s) 157
SfcI CTRYAG 1 cut(s) 243
Sse9I AATT 4 cut(s) 124, 183, 335, 352
SsiI CCGC 3 cut(s) 42, 211, 236
SspMI CTAG 1 cut(s) 399
TaiI ACGT 1 cut(s) 222
TaqI TCGA 1 cut(s) 273
TasI AATT 4 cut(s) 124, 183, 335, 352
TauI GCSGC 1 cut(s) 214
TfiI GAWTC 6 cut(s) 10, 22, 66, 147, 225, 294
TseFI GTSAC 1 cut(s) 215
Tsp45I GTSAC 1 cut(s) 215
XapI RAATTY 1 cut(s) 335
XmnI GAANNNNTTC 1 cut(s) 298
XspI CTAG 1 cut(s) 399
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.