Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0039920.1

Orthogroup ID

OG0008779

Physical Location & Seq

Genomic Coordinates Forward (+)

466 .. 1326

Gene Structure 861 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0039920.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

atgctcgccctccacagagcggtccggcggttccacgctaccgccgatgctccgccgctcaccagattcgccctccacgcgcctaaatatgtagaggtggagtttggcaatggcagtgtgttcaacttgtcagctgagttcttaagagttcacagtccagctgttgatgccaagattaggtccattgctggtgaaaaggtgatatcggggcggcgtctggtggggatcatgtctgcagaacctgtaggaaactatggggtgaggattcttttcgatgacttgcataagactggcatctattcgtgggattacttgtatcatttggggagtaacaagtttagcctcatgagaagttacatcaagactctcaacaagtatggactccgccgagatccgcctagaaggaaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF971

Protein Analysis

136

Amino Acids

15.46

Weight (kDa)

10.27

Isoelectric Point (pI)

48.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008779)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27340 AT3G27340 AT3G27340 AT3G27340
fragaria_vesca	FvH4_6g52430 FvH4_6g52430 FvH4_6g52430 FvH4_6g52430 FvH4_6g52430 FvH4_6g52430 FvH4_6g52430
malus_domestica	MD09G1018100.v1.1
pyrus_communis	pycom111g01510
rosa_chinensis	RchiOBHm_Chr2g0174071
rosa_laevigata	RLG00000022242
rosa_multiflora	Rmu_sc0029858.1_g000001 Rmu_sc0039920.1_g000001
rosa_roxburghii	Rroxscaffold_2G00078480
rosa_rugosa	Rorug02G0574600
rosa_samantha	Rh2AG653800 Rh2BG665100 Rh2CG629400 Rh2DG679800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	20, 58
AccII	CGCG	1 cut(s)	80
AciI	CCGC	8 cut(s)	20, 28, 42, 53, 56, 211, 385, 395
AclWI	GGATC	2 cut(s)	233, 386
AcyI	GRCGYC	1 cut(s)	214
AfiI	CCNNNNNNNGG	2 cut(s)	19, 177
AflII	CTTAAG	1 cut(s)	142
AgsI	TTSAA	1 cut(s)	124
AluBI	AGCT	2 cut(s)	134, 161
AluI	AGCT	2 cut(s)	134, 161
AlwI	GGATC	2 cut(s)	233, 386
AlwNI	CAGNNNCTG	1 cut(s)	242
AspLEI	GCGC	1 cut(s)	82
AspS9I	GGNCC	2 cut(s)	22, 180
AsuHPI	GGTGA	4 cut(s)	52, 203, 211, 271
AvaII	GGWCC	2 cut(s)	22, 180
BfaI	CTAG	1 cut(s)	399
BfmI	CTRYAG	2 cut(s)	234, 243
BfrI	CTTAAG	1 cut(s)	142
BisI	GCNGC	2 cut(s)	56, 212
BlsI	GCNGC	2 cut(s)	57, 213
Bme18I	GGWCC	2 cut(s)	22, 180
BmgT120I	GGNCC	2 cut(s)	22, 180
BmiI	GGNNCC	1 cut(s)	32
BmsI	GCATC	3 cut(s)	37, 157, 303
BsaHI	GRCGYC	1 cut(s)	214
Bsc4I	CCNNNNNNNGG	2 cut(s)	19, 177
Bse1I	ACTGG	1 cut(s)	295
Bse3DI	GCAATG	2 cut(s)	115, 183
BseLI	CCNNNNNNNGG	2 cut(s)	19, 177
BseMI	GCAATG	2 cut(s)	115, 183
BseMII	CTCAG	1 cut(s)	126
BseNI	ACTGG	1 cut(s)	295
Bsh1236I	CGCG	1 cut(s)	80
BsiSI	CCGG	1 cut(s)	25
BslI	CCNNNNNNNGG	2 cut(s)	19, 177
Bsp143I	GATC	2 cut(s)	225, 391
BspACI	CCGC	8 cut(s)	20, 28, 42, 53, 56, 211, 385, 395
BspCNI	CTCAG	1 cut(s)	127
BspFNI	CGCG	1 cut(s)	80
BspHI	TCATGA	1 cut(s)	345
BspLI	GGNNCC	1 cut(s)	32
BspMAI	CTGCAG	1 cut(s)	238
BspPI	GGATC	2 cut(s)	233, 386
BspTI	CTTAAG	1 cut(s)	142
BsrBI	CCGCTC	2 cut(s)	20, 58
BsrDI	GCAATG	2 cut(s)	115, 183
BsrI	ACTGG	1 cut(s)	295
BssMI	GATC	2 cut(s)	225, 391
BssNI	GRCGYC	1 cut(s)	214
Bst4CI	ACNGT	1 cut(s)	155
BstACI	GRCGYC	1 cut(s)	214
BstAFI	CTTAAG	1 cut(s)	142
BstC8I	GCNNGC	1 cut(s)	6
BstDEI	CTNAG	1 cut(s)	135
BstFNI	CGCG	1 cut(s)	80
BstHHI	GCGC	1 cut(s)	82
BstKTI	GATC	2 cut(s)	228, 394
BstMBI	GATC	2 cut(s)	225, 391
BstMWI	GCNNNNNNNGC	2 cut(s)	77, 167
BstSFI	CTRYAG	2 cut(s)	234, 243
BstUI	CGCG	1 cut(s)	80
BstX2I	RGATCY	1 cut(s)	391
BstYI	RGATCY	1 cut(s)	391
BtsI	GCAGTG	1 cut(s)	121
BtsIMutI	CAGTG	1 cut(s)	121
Cac8I	GCNNGC	1 cut(s)	6
CaiI	CAGNNNCTG	1 cut(s)	242
CciI	TCATGA	1 cut(s)	345
CfoI	GCGC	1 cut(s)	82
Cfr13I	GGNCC	2 cut(s)	22, 180
CpoI	CGGWCCG	1 cut(s)	22
CseI	GACGC	1 cut(s)	203
CspI	CGGWCCG	1 cut(s)	22
CviAII	CATG	2 cut(s)	229, 346
CviJI	RGCY	3 cut(s)	134, 161, 342
CviKI_1	RGCY	3 cut(s)	134, 161, 342
DdeI	CTNAG	1 cut(s)	135
DpnI	GATC	2 cut(s)	227, 393
DpnII	GATC	2 cut(s)	225, 391
EciI	GGCGGA	3 cut(s)	42, 374, 384
Eco32I	GATATC	1 cut(s)	204
Eco47I	GGWCC	2 cut(s)	22, 180
EcoRV	GATATC	1 cut(s)	204
FaeI	CATG	2 cut(s)	232, 349
FaiI	YATR	6 cut(s)	90, 230, 255, 285, 347, 378
FatI	CATG	2 cut(s)	228, 345
Fnu4HI	GCNGC	2 cut(s)	56, 212
Fsp4HI	GCNGC	2 cut(s)	56, 212
FspBI	CTAG	1 cut(s)	399
GlaI	GCGC	1 cut(s)	81
GluI	GCNGC	2 cut(s)	56, 212
HapII	CCGG	1 cut(s)	25
HgaI	GACGC	1 cut(s)	203
HhaI	GCGC	1 cut(s)	82
Hin1I	GRCGYC	1 cut(s)	214
Hin1II	CATG	2 cut(s)	232, 349
Hin6I	GCGC	1 cut(s)	80
HinP1I	GCGC	1 cut(s)	80
HinfI	GANTC	4 cut(s)	66, 265, 364, 381
HpaII	CCGG	1 cut(s)	25
HphI	GGTGA	4 cut(s)	52, 203, 211, 271
Hpy166II	GTNNAC	1 cut(s)	151
Hpy188III	TCNNGA	2 cut(s)	346, 361
Hpy8I	GTNNAC	1 cut(s)	151
HpyAV	CCTTC	1 cut(s)	396
HpyCH4III	ACNGT	1 cut(s)	155
HpyCH4V	TGCA	2 cut(s)	236, 283
HpyF10VI	GCNNNNNNNGC	2 cut(s)	77, 167
HpyF3I	CTNAG	1 cut(s)	135
Hsp92I	GRCGYC	1 cut(s)	214
Hsp92II	CATG	2 cut(s)	232, 349
HspAI	GCGC	1 cut(s)	80
Kzo9I	GATC	2 cut(s)	225, 391
LmnI	GCTCC	1 cut(s)	55
LpnPI	CCDG	7 cut(s)	38, 76, 171, 174, 203, 255, 276
LweI	GCATC	3 cut(s)	37, 157, 303
MaeI	CTAG	1 cut(s)	399
MaeIII	GTNAC	2 cut(s)	329, 353
MalI	GATC	2 cut(s)	227, 393
MbiI	CCGCTC	2 cut(s)	20, 58
MboI	GATC	2 cut(s)	225, 391
MflI	RGATCY	1 cut(s)	391
MlyI	GAGTC	2 cut(s)	358, 375
MnlI	CCTC	5 cut(s)	20, 83, 88, 255, 353
MseI	TTAA	1 cut(s)	143
MspA1I	CMGCKG	2 cut(s)	134, 161
MspCI	CTTAAG	1 cut(s)	142
MspI	CCGG	1 cut(s)	25
MvnI	CGCG	1 cut(s)	80
MwoI	GCNNNNNNNGC	2 cut(s)	77, 167
NdeII	GATC	2 cut(s)	225, 391
NlaIII	CATG	2 cut(s)	232, 349
NlaIV	GGNNCC	1 cut(s)	32
PagI	TCATGA	1 cut(s)	345
PcsI	WCGNNNNNNNCGW	1 cut(s)	42
PfeI	GAWTC	2 cut(s)	66, 265
PkrI	GCNGC	2 cut(s)	57, 213
PleI	GAGTC	2 cut(s)	358, 375
PpsI	GAGTC	2 cut(s)	358, 375
PspN4I	GGNNCC	1 cut(s)	32
PspPI	GGNCC	2 cut(s)	22, 180
PstI	CTGCAG	1 cut(s)	238
PstNI	CAGNNNCTG	1 cut(s)	242
PsuI	RGATCY	1 cut(s)	391
PvuII	CAGCTG	2 cut(s)	134, 161
Rsr2I	CGGWCCG	1 cut(s)	22
RsrII	CGGWCCG	1 cut(s)	22
SaqAI	TTAA	1 cut(s)	143
SatI	GCNGC	2 cut(s)	56, 212
Sau3AI	GATC	2 cut(s)	225, 391
Sau96I	GGNCC	2 cut(s)	22, 180
SchI	GAGTC	2 cut(s)	358, 375
SetI	ASST	6 cut(s)	99, 136, 163, 182, 201, 244
SfaNI	GCATC	3 cut(s)	37, 157, 303
SfcI	CTRYAG	2 cut(s)	234, 243
SinI	GGWCC	2 cut(s)	22, 180
SmlI	CTYRAG	1 cut(s)	142
SmoI	CTYRAG	1 cut(s)	142
SsiI	CCGC	8 cut(s)	20, 28, 42, 53, 56, 211, 385, 395
SspMI	CTAG	1 cut(s)	399
TaaI	ACNGT	1 cut(s)	155
TaqI	TCGA	1 cut(s)	273
TauI	GCSGC	2 cut(s)	58, 214
TfiI	GAWTC	2 cut(s)	66, 265
Tru1I	TTAA	1 cut(s)	143
Tru9I	TTAA	1 cut(s)	143
TscAI	CASTG	1 cut(s)	121
TspRI	CASTG	1 cut(s)	121
Vha464I	CTTAAG	1 cut(s)	142
VpaK11BI	GGWCC	2 cut(s)	22, 180
XspI	CTAG	1 cut(s)	399

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.