FvH4_6g53560

Ribonucleoside-diphosphate reductase small

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Forward (+)
39232894 .. 39234173
1280 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g53560.t1

Sequence Viewer

Length: 990 bp
ATGCCTGCGATTCCGGAAGAGCCGCTCCTGATGGCCAACCCGGACCGGTTCTGCATGTTCCCGATTCAATACCCGGAGATCTGGGAGATGTACAAGAAGGCCGAGGCGTCGTTCTGGACCGCCGAGGAGGTCGATCTCGATCAAGACCAGCGCCACTGGGAAACCCTAACCCCCGGCGAGAAGCACTTCATCACTCACGTCCTCGCCTTCTTCGCCGCCTCCGACGGCATCGTACTCGAGAATCTTGCCGGAAGGTTCATGAAGGAGGTCCAGGTCTCGGAGGCGCGTGCCTTCTACGGCTTCCAGATCGCGATTGAGAACATCCACTCCGAGATGTACAGCCTCCTCCTCGAGACCTACATCAAAGACTCGGACGAGAAGTCCCGTCTCTTCCGGGCCGTCGACACCATCCCTTGCGTCGCGAAAAAGGCGCAGTGGGCCCTGAAATGGATCGACGGCTCCGAAACTTTCGCGGAGCGGATCGTGGCCTTCGCCTGCGTGGAAGGGATCTTCTTCTCGGGAAGCTTCTGCGCGATATTTTGGCTAAAAAAGCGCGGGTTGATGCCGGGTCTGACCTTCTCGAACGAGTTGATCTCGCGAGATGAAGGCCTCCACTGCGACTTCGCGTGCCTTCTCTACTCCCTCCTCCGGATGAAGCTCACCGAGGAGCGCGTGAAGTCAATCGTGCGGAACGCGGTTGACATAGAGAAGGAGTTCGTCTGCGACGCGTTACCGTGCGCCTTAGTTGGGATGAACGGTGATCTGATGGGTCAGTACATCGAGTTCGTCGCTGATAGGCTGCTGGGTGCGTTGGGATATGGGAAACTGTATGATGTGCAGAACCCATTTGATTGGATGGAGCTGATTAGTCTTCAGGGGAAGACCAATTTCTTTGAGAAGAGAGTTGGGGAGTACCAGAAGGCCTCAGTTATGAACAGTATTAGTGGAAATGGTGGCAACCATGTGTTCAAGATGGATGAGGATTTCTGA

Protein Analysis

330

Amino Acids

37.62

Weight (kDa)

4.89

Isoelectric Point (pI)

33.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribonuc_red_sm PF00268 16 - 282 3e-114 Ribonucleotide reductase, small chain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0013930)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G27060
fragaria_vesca FvH4_6g53560
malus_domestica MD00G1139000.v1.1 MD09G1010500.v1.1
prunus_persica Prupe.3G306600_v2.0.a1
pyrus_communis pycom111g00840 pycom17g00920
rosa_chinensis RchiOBHm_Chr2g0175591
rosa_laevigata RLG00000022342
rosa_multiflora Rmu_sc0013970.1_g000001
rosa_roxburghii Rroxscaffold_2G00077190
rosa_rugosa Rorug02G0586600
rosa_samantha Rh2AG665600 Rh2BG676500 Rh2CG639700 Rh2DG690500
rosa_wichuraiana Rw2G054580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 2 cut(s) 25, 478
AccI GTMKAC 1 cut(s) 402
AccIII TCCGGA 2 cut(s) 13, 648
AciI CCGC 8 cut(s) 23, 120, 216, 473, 478, 555, 688, 695
AclWI GGATC 3 cut(s) 458, 488, 515
AcoI YGGCCR 1 cut(s) 33
AcuI CTGAAG 1 cut(s) 857
AcyI GRCGYC 1 cut(s) 107
AfaI GTAC 5 cut(s) 92, 234, 338, 776, 914
AfiI CCNNNNNNNGG 4 cut(s) 277, 447, 648, 747
AflIII ACRYGT 1 cut(s) 726
AgeI ACCGGT 1 cut(s) 45
AgsI TTSAA 2 cut(s) 68, 970
AhdI GACNNNNNGTC 1 cut(s) 379
AjiI CACGTC 1 cut(s) 199
AjnI CCWGG 1 cut(s) 270
AloI GAACNNNNNNTCC 2 cut(s) 311, 343
AluBI AGCT 3 cut(s) 525, 658, 862
AluI AGCT 3 cut(s) 525, 658, 862
Alw26I GTCTC 3 cut(s) 280, 347, 392
AlwI GGATC 3 cut(s) 458, 488, 515
Ama87I CYCGRG 3 cut(s) 236, 350, 517
Aor13HI TCCGGA 2 cut(s) 13, 648
AoxI GGCC 7 cut(s) 33, 99, 396, 438, 486, 607, 921
ApaI GGGCCC 1 cut(s) 442
ApeKI GCWGC 1 cut(s) 799
AsiGI ACCGGT 1 cut(s) 45
Asp700I GAANNNNTTC 2 cut(s) 185, 713
AspLEI GCGC 7 cut(s) 153, 286, 433, 533, 555, 672, 740
AspS9I GGNCC 6 cut(s) 43, 117, 268, 396, 438, 439
AsuC2I CCSGG 5 cut(s) 41, 74, 174, 395, 567
AsuHPI GGTGA 2 cut(s) 652, 770
AvaI CYCGRG 3 cut(s) 236, 350, 517
AvaII GGWCC 3 cut(s) 43, 117, 268
BaeGI GKGCMC 1 cut(s) 442
BalI TGGCCA 1 cut(s) 35
BanII GRGCYC 1 cut(s) 442
BbsI GAAGAC 2 cut(s) 863, 887
BbvI GCAGC 1 cut(s) 786
BccI CCATC 5 cut(s) 25, 416, 760, 850, 967
BceAI ACGGC 4 cut(s) 241, 313, 383, 472
BcgI CGANNNNNNTGC 4 cut(s) 217, 227, 251, 261
BciT130I CCWGG 1 cut(s) 272
BcnI CCSGG 5 cut(s) 41, 74, 174, 395, 567
BcoDI GTCTC 3 cut(s) 280, 347, 392
BfoI RGCGCY 1 cut(s) 154
BglII AGATCT 1 cut(s) 78
BisI GCNGC 3 cut(s) 23, 216, 800
BlsI GCNGC 3 cut(s) 24, 217, 801
Bme1390I CCNGG 6 cut(s) 41, 74, 174, 272, 395, 567
Bme18I GGWCC 3 cut(s) 43, 117, 268
BmeRI GACNNNNNGTC 1 cut(s) 379
BmeT110I CYCGRG 3 cut(s) 236, 350, 517
BmgBI CACGTC 1 cut(s) 199
BmgT120I GGNCC 6 cut(s) 43, 117, 268, 396, 438, 439
BmiI GGNNCC 2 cut(s) 440, 460
BmrFI CCNGG 6 cut(s) 41, 74, 174, 272, 395, 567
BmrI ACTGGG 1 cut(s) 166
BmsI GCATC 2 cut(s) 237, 552
BmuI ACTGGG 1 cut(s) 166
BpiI GAAGAC 2 cut(s) 863, 887
BplI GAGNNNNNCTC 2 cut(s) 578, 610
BpuMI CCSGG 5 cut(s) 41, 74, 174, 395, 567
BsaBI GATNNNNATC 1 cut(s) 138
BsaHI GRCGYC 1 cut(s) 107
BsaI GGTCTC 2 cut(s) 280, 347
BsaJI CCNNGG 4 cut(s) 102, 123, 172, 663
BsaWI WCCGGW 3 cut(s) 13, 45, 648
BsaXI ACNNNNNCTCC 2 cut(s) 311, 341
Bsc4I CCNNNNNNNGG 4 cut(s) 277, 447, 648, 747
Bse118I RCCGGY 1 cut(s) 45
Bse1I ACTGG 1 cut(s) 161
Bse8I GATNNNNATC 1 cut(s) 138
BseAI TCCGGA 2 cut(s) 13, 648
BseBI CCWGG 1 cut(s) 272
BseDI CCNNGG 4 cut(s) 102, 123, 172, 663
BseGI GGATG 6 cut(s) 321, 408, 657, 756, 861, 982
BseJI GATNNNNATC 1 cut(s) 138
BseLI CCNNNNNNNGG 4 cut(s) 277, 447, 648, 747
BseMII CTCAG 1 cut(s) 939
BseNI ACTGG 1 cut(s) 161
BseRI GAGGAG 5 cut(s) 140, 335, 338, 635, 680
BseSI GKGCMC 1 cut(s) 442
BseXI GCAGC 1 cut(s) 786
BseYI CCCAGC 1 cut(s) 802
BsgI GTGCAG 1 cut(s) 857
BshFI GGCC 7 cut(s) 35, 101, 398, 440, 488, 609, 923
BshTI ACCGGT 1 cut(s) 45
BsiHKCI CYCGRG 3 cut(s) 236, 350, 517
BsiSI CCGG 9 cut(s) 14, 41, 46, 74, 174, 249, 394, 566, 649
BslFI GGGAC 1 cut(s) 367
BslI CCNNNNNNNGG 4 cut(s) 277, 447, 648, 747
BsmAI GTCTC 3 cut(s) 280, 347, 392
BsmBI CGTCTC 1 cut(s) 392
BsmFI GGGAC 1 cut(s) 367
BsnI GGCC 7 cut(s) 35, 101, 398, 440, 488, 609, 923
Bso31I GGTCTC 2 cut(s) 280, 347
BsoBI CYCGRG 3 cut(s) 236, 350, 517
Bsp120I GGGCCC 1 cut(s) 438
Bsp1286I GDGCHC 1 cut(s) 442
Bsp13I TCCGGA 2 cut(s) 13, 648
Bsp1407I TGTACA 2 cut(s) 90, 336
Bsp143I GATC 9 cut(s) 78, 133, 139, 306, 450, 480, 507, 591, 760
Bsp68I TCGCGA 3 cut(s) 311, 422, 598
BspACI CCGC 8 cut(s) 23, 120, 216, 473, 478, 555, 688, 695
BspANI GGCC 7 cut(s) 35, 101, 398, 440, 488, 609, 923
BspCNI CTCAG 1 cut(s) 938
BspEI TCCGGA 2 cut(s) 13, 648
BspHI TCATGA 1 cut(s) 258
BspLI GGNNCC 2 cut(s) 440, 460
BspPI GGATC 3 cut(s) 458, 488, 515
BspQI GCTCTTC 1 cut(s) 12
BspTNI GGTCTC 2 cut(s) 280, 347
BsrBI CCGCTC 2 cut(s) 25, 478
BsrFI RCCGGY 1 cut(s) 45
BsrGI TGTACA 2 cut(s) 90, 336
BsrI ACTGG 1 cut(s) 161
BssAI RCCGGY 1 cut(s) 45
BssECI CCNNGG 4 cut(s) 102, 123, 172, 663
BssMI GATC 9 cut(s) 78, 133, 139, 306, 450, 480, 507, 591, 760
BssNI GRCGYC 1 cut(s) 107
Bst2UI CCWGG 1 cut(s) 272
Bst4CI ACNGT 4 cut(s) 735, 758, 828, 938
Bst6I CTCTTC 3 cut(s) 12, 395, 893
BstACI GRCGYC 1 cut(s) 107
BstAUI TGTACA 2 cut(s) 90, 336
BstC8I GCNNGC 4 cut(s) 6, 288, 496, 628
BstDEI CTNAG 2 cut(s) 742, 925
BstF5I GGATG 6 cut(s) 321, 408, 657, 756, 861, 982
BstH2I RGCGCY 1 cut(s) 154
BstHHI GCGC 7 cut(s) 153, 286, 433, 533, 555, 672, 740
BstKTI GATC 9 cut(s) 81, 136, 142, 309, 453, 483, 510, 594, 763
BstMAI GTCTC 3 cut(s) 280, 347, 392
BstMBI GATC 9 cut(s) 78, 133, 139, 306, 450, 480, 507, 591, 760
BstMWI GCNNNNNNNGC 5 cut(s) 212, 428, 437, 550, 615
BstNI CCWGG 1 cut(s) 272
BstNSI RCATGY 1 cut(s) 58
BstSCI CCNGG 6 cut(s) 39, 72, 172, 270, 393, 565
BstSLI GKGCMC 1 cut(s) 442
BstV1I GCAGC 1 cut(s) 786
BstV2I GAAGAC 2 cut(s) 863, 887
BstX2I RGATCY 2 cut(s) 78, 507
BstXI CCANNNNNNTGG 1 cut(s) 852
BstYI RGATCY 2 cut(s) 78, 507
BsuRI GGCC 7 cut(s) 35, 101, 398, 440, 488, 609, 923
BtrI CACGTC 1 cut(s) 199
BtsCI GGATG 6 cut(s) 321, 408, 657, 756, 861, 982
BtsI GCAGTG 2 cut(s) 440, 613
BtsIMutI CAGTG 3 cut(s) 154, 440, 613
BtuMI TCGCGA 3 cut(s) 311, 422, 598
Cac8I GCNNGC 4 cut(s) 6, 288, 496, 628
CciI TCATGA 1 cut(s) 258
CfoI GCGC 7 cut(s) 153, 286, 433, 533, 555, 672, 740
Cfr10I RCCGGY 1 cut(s) 45
Cfr13I GGNCC 6 cut(s) 43, 117, 268, 396, 438, 439
CpoI CGGWCCG 1 cut(s) 43
CseI GACGC 3 cut(s) 96, 406, 734
Csp6I GTAC 5 cut(s) 91, 233, 337, 775, 913
CspAI ACCGGT 1 cut(s) 45
CspI CGGWCCG 1 cut(s) 43
CviAII CATG 3 cut(s) 55, 259, 962
CviQI GTAC 5 cut(s) 91, 233, 337, 775, 913
DdeI CTNAG 2 cut(s) 742, 925
DpnI GATC 9 cut(s) 80, 135, 141, 308, 452, 482, 509, 593, 762
DpnII GATC 9 cut(s) 78, 133, 139, 306, 450, 480, 507, 591, 760
DriI GACNNNNNGTC 1 cut(s) 379
EaeI YGGCCR 1 cut(s) 33
Eam1104I CTCTTC 3 cut(s) 12, 395, 893
Eam1105I GACNNNNNGTC 1 cut(s) 379
EarI CTCTTC 3 cut(s) 12, 395, 893
Eco147I AGGCCT 2 cut(s) 609, 923
Eco24I GRGCYC 1 cut(s) 442
Eco31I GGTCTC 2 cut(s) 280, 347
Eco47I GGWCC 3 cut(s) 43, 117, 268
Eco57I CTGAAG 1 cut(s) 857
Eco88I CYCGRG 3 cut(s) 236, 350, 517
EcoO109I RGGNCCY 1 cut(s) 439
EcoRII CCWGG 1 cut(s) 270
EcoT38I GRGCYC 1 cut(s) 442
Esp3I CGTCTC 1 cut(s) 392
FaeI CATG 3 cut(s) 58, 262, 965
FaiI YATR 7 cut(s) 56, 260, 704, 819, 831, 932, 963
FaqI GGGAC 1 cut(s) 367
FatI CATG 3 cut(s) 54, 258, 961
FauI CCCGC 1 cut(s) 548
FblI GTMKAC 1 cut(s) 402
Fnu4HI GCNGC 3 cut(s) 23, 216, 800
FokI GGATG 5 cut(s) 308, 395, 664, 763, 868
FriOI GRGCYC 1 cut(s) 442
Fsp4HI GCNGC 3 cut(s) 23, 216, 800
GlaI GCGC 7 cut(s) 152, 285, 432, 532, 554, 671, 739
GluI GCNGC 3 cut(s) 23, 216, 800
GsaI CCCAGC 1 cut(s) 806
HaeII RGCGCY 1 cut(s) 154
HaeIII GGCC 7 cut(s) 35, 101, 398, 440, 488, 609, 923
HapII CCGG 9 cut(s) 14, 41, 46, 74, 174, 249, 394, 566, 649
HgaI GACGC 3 cut(s) 96, 406, 734
HhaI GCGC 7 cut(s) 153, 286, 433, 533, 555, 672, 740
Hin1I GRCGYC 1 cut(s) 107
Hin1II CATG 3 cut(s) 58, 262, 965
Hin6I GCGC 7 cut(s) 151, 284, 431, 531, 553, 670, 738
HinP1I GCGC 7 cut(s) 151, 284, 431, 531, 553, 670, 738
HincII GTYRAC 2 cut(s) 403, 700
HindII GTYRAC 2 cut(s) 403, 700
HindIII AAGCTT 1 cut(s) 523
HinfI GANTC 4 cut(s) 10, 64, 241, 368
HpaII CCGG 9 cut(s) 14, 41, 46, 74, 174, 249, 394, 566, 649
HphI GGTGA 2 cut(s) 652, 770
Hpy166II GTNNAC 2 cut(s) 403, 700
Hpy188I TCNGA 8 cut(s) 223, 280, 331, 373, 463, 573, 765, 989
Hpy8I GTNNAC 2 cut(s) 403, 700
Hpy99I CGWCG 7 cut(s) 112, 227, 404, 422, 458, 728, 791
HpyCH4III ACNGT 4 cut(s) 735, 758, 828, 938
HpyCH4IV ACGT 1 cut(s) 198
HpyCH4V TGCA 2 cut(s) 54, 838
HpyF10VI GCNNNNNNNGC 5 cut(s) 212, 428, 437, 550, 615
HpyF3I CTNAG 2 cut(s) 742, 925
HpySE526I ACGT 1 cut(s) 198
Hsp92I GRCGYC 1 cut(s) 107
Hsp92II CATG 3 cut(s) 58, 262, 965
HspAI GCGC 7 cut(s) 151, 284, 431, 531, 553, 670, 738
Kpn2I TCCGGA 2 cut(s) 13, 648
Kzo9I GATC 9 cut(s) 78, 133, 139, 306, 450, 480, 507, 591, 760
LguI GCTCTTC 1 cut(s) 12
LmnI GCTCC 5 cut(s) 30, 464, 475, 667, 859
Lsp1109I GCAGC 1 cut(s) 786
LweI GCATC 2 cut(s) 237, 552
MaeII ACGT 1 cut(s) 198
MaeIII GTNAC 1 cut(s) 729
MalI GATC 9 cut(s) 80, 135, 141, 308, 452, 482, 509, 593, 762
MbiI CCGCTC 2 cut(s) 25, 478
MboI GATC 9 cut(s) 78, 133, 139, 306, 450, 480, 507, 591, 760
MboII GAAGA 8 cut(s) 29, 202, 382, 502, 505, 863, 892, 910
MflI RGATCY 2 cut(s) 78, 507
MhlI GDGCHC 1 cut(s) 442
MlsI TGGCCA 1 cut(s) 35
MluCI AATT 1 cut(s) 886
MluI ACGCGT 1 cut(s) 726
MluNI TGGCCA 1 cut(s) 35
MlyI GAGTC 1 cut(s) 362
MmeI TCCRAC 1 cut(s) 246
Mox20I TGGCCA 1 cut(s) 35
MroI TCCGGA 2 cut(s) 13, 648
MroXI GAANNNNTTC 2 cut(s) 185, 713
MscI TGGCCA 1 cut(s) 35
Msp20I TGGCCA 1 cut(s) 35
MspI CCGG 9 cut(s) 14, 41, 46, 74, 174, 249, 394, 566, 649
MspR9I CCNGG 6 cut(s) 41, 74, 174, 272, 395, 567
MvaI CCWGG 1 cut(s) 272
MwoI GCNNNNNNNGC 5 cut(s) 212, 428, 437, 550, 615
NciI CCSGG 5 cut(s) 41, 74, 174, 395, 567
NdeII GATC 9 cut(s) 78, 133, 139, 306, 450, 480, 507, 591, 760
NlaIII CATG 3 cut(s) 58, 262, 965
NlaIV GGNNCC 2 cut(s) 440, 460
NmeAIII GCCGAG 2 cut(s) 127, 148
NruI TCGCGA 3 cut(s) 311, 422, 598
NspI RCATGY 1 cut(s) 58
PaeR7I CTCGAG 2 cut(s) 236, 350
PagI TCATGA 1 cut(s) 258
PceI AGGCCT 2 cut(s) 609, 923
PciSI GCTCTTC 1 cut(s) 12
PcsI WCGNNNNNNNCGW 2 cut(s) 219, 459
PdmI GAANNNNTTC 2 cut(s) 185, 713
PfeI GAWTC 3 cut(s) 10, 64, 241
PinAI ACCGGT 1 cut(s) 45
PkrI GCNGC 3 cut(s) 24, 217, 801
PleI GAGTC 1 cut(s) 362
PpsI GAGTC 1 cut(s) 362
Psp6I CCWGG 1 cut(s) 270
PspFI CCCAGC 1 cut(s) 802
PspGI CCWGG 1 cut(s) 270
PspN4I GGNNCC 2 cut(s) 440, 460
PspOMI GGGCCC 1 cut(s) 438
PspPI GGNCC 6 cut(s) 43, 117, 268, 396, 438, 439
PsrI GAACNNNNNNTAC 2 cut(s) 767, 799
PsuI RGATCY 2 cut(s) 78, 507
RruI TCGCGA 3 cut(s) 311, 422, 598
RsaI GTAC 5 cut(s) 92, 234, 338, 776, 914
RsaNI GTAC 5 cut(s) 91, 233, 337, 775, 913
Rsr2I CGGWCCG 1 cut(s) 43
RsrII CGGWCCG 1 cut(s) 43
SalI GTCGAC 1 cut(s) 401
SapI GCTCTTC 1 cut(s) 12
SatI GCNGC 3 cut(s) 23, 216, 800
Sau3AI GATC 9 cut(s) 78, 133, 139, 306, 450, 480, 507, 591, 760
Sau96I GGNCC 6 cut(s) 43, 117, 268, 396, 438, 439
SchI GAGTC 1 cut(s) 362
ScrFI CCNGG 6 cut(s) 41, 74, 174, 272, 395, 567
SduI GDGCHC 1 cut(s) 442
SfaNI GCATC 2 cut(s) 237, 552
Sfr274I CTCGAG 2 cut(s) 236, 350
SinI GGWCC 3 cut(s) 43, 117, 268
SlaI CTCGAG 2 cut(s) 236, 350
SmlI CTYRAG 2 cut(s) 236, 350
SmoI CTYRAG 2 cut(s) 236, 350
Sse9I AATT 1 cut(s) 886
SseBI AGGCCT 2 cut(s) 609, 923
SsiI CCGC 8 cut(s) 23, 120, 216, 473, 478, 555, 688, 695
StuI AGGCCT 2 cut(s) 609, 923
StyD4I CCNGG 6 cut(s) 39, 72, 172, 270, 393, 565
TaaI ACNGT 4 cut(s) 735, 758, 828, 938
TaiI ACGT 1 cut(s) 201
TaqI TCGA 8 cut(s) 132, 138, 237, 351, 402, 453, 581, 780
TasI AATT 1 cut(s) 886
TatI WGTACW 3 cut(s) 90, 336, 774
TauI GCSGC 2 cut(s) 25, 218
TfiI GAWTC 3 cut(s) 10, 64, 241
TscAI CASTG 3 cut(s) 161, 440, 620
TseI GCWGC 1 cut(s) 799
TspDTI ATGAA 7 cut(s) 178, 247, 275, 618, 668, 767, 947
TspRI CASTG 3 cut(s) 161, 440, 620
VpaK11BI GGWCC 3 cut(s) 43, 117, 268
XceI RCATGY 1 cut(s) 58
XhoI CTCGAG 2 cut(s) 236, 350
XmiI GTMKAC 1 cut(s) 402
XmnI GAANNNNTTC 2 cut(s) 185, 713
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.