MD00G1139000.v1.1

Ribonucleoside-diphosphate reductase small

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr00
Physical Location & Seq
Reverse (-)
30046253 .. 30047309
1057 bp
Loading structure...
UTR
Exon/CDS
Intron
MD00G1139000.v1.1.491

Sequence Viewer

Length: 990 bp
ATGCCTGCCTTCCCAGAAGAGCCGCTGCTAGCTCCGAACCCGGACCGCTTCTGTATGTTTCCGATCCAGTACCCGGAAATCTGGGAAATGTACAAGAAGGCCGAGGCCTCCTTCTGGACCGCCGAGGAGGTCGACCTATGCCAGGACATCCGCCACTGGGAGGCCCTATCCGACGGCGAGAGGCACTTCGTCTCGCACATTCTCGCCTTCTTCGCTGCCTCCGACGGCATCGTCCTTGAGAATCTCGCTGGGAGGTTTATGAAGGAGGTCCAGGTCGCCGAGGCCCGCGCCTTCTACGGGTTCCAGATAGCCATTGAGAACATCCACTCCGAGATGTACAGCCTCCTTCTCGAGACGTACATCAAGGACTCCGACGAGAAGCACCGCCTCTTCCACGCGATCGACACCATCCCCTGCGTCGCGAAGAAGGCCCAGTGGGCCCTGAGATGGATCGACGGCTCCGAGTCTTTCGCGGAGCGAATCGTGGCCTTTGCCTGCGTGGAGGGGATTTTCTTCTCGGGGAGTTTCTGCGCGATATTTTGGCTTAAAAAGCGCGGTTTAATGCCGGGACTGACTTTCTCCAACGAACTGATCTCGCGAGACGAGGGCTTGCACTGCGACTTCGCGTGTTTGCTGTACTCGCTGCTGAGGAAGAAGCTGAGCGAGGATCGGGTTAAGTCGATCGTACGGAACGCGGTGGAGATCGAGAGGGAGTTCGTGTGCGACGCGCTGCCGTGTGCGCTGGTGGGTATGAACGGCGATCTGATGGGCACGTACATCGAGTTCGTGGCGGATCGGCTGCTGGGCTCGTTGGGATACGGCAAGATGTACAATGTCCAGAACCCGTTCGATTGGATGGAGCTGATCAGCCTGCAGGGGAAGACCAACTTCTTCGAGAAGCGCGTCGGCGAGTATCAGAAGGCGTCGGTGATGAACAGCATCAACGGCAACGGTGGCTCCCATGAGTTCAAGATGGACGAGGATTTCTGA

Protein Analysis

330

Amino Acids

37.67

Weight (kDa)

4.99

Isoelectric Point (pI)

40.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribonuc_red_sm PF00268 16 - 282 1.9e-115 Ribonucleotide reductase, small chain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0013930)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G27060
fragaria_vesca FvH4_6g53560
malus_domestica MD00G1139000.v1.1 MD09G1010500.v1.1
prunus_persica Prupe.3G306600_v2.0.a1
pyrus_communis pycom111g00840 pycom17g00920
rosa_chinensis RchiOBHm_Chr2g0175591
rosa_laevigata RLG00000022342
rosa_multiflora Rmu_sc0013970.1_g000001
rosa_roxburghii Rroxscaffold_2G00077190
rosa_rugosa Rorug02G0586600
rosa_samantha Rh2AG665600 Rh2BG676500 Rh2CG639700 Rh2DG690500
rosa_wichuraiana Rw2G054580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 230
AccI GTMKAC 1 cut(s) 132
AclWI GGATC 4 cut(s) 58, 458, 675, 801
AcyI GRCGYC 1 cut(s) 923
AfaI GTAC 8 cut(s) 71, 92, 338, 359, 638, 687, 776, 830
AfiI CCNNNNNNNGG 7 cut(s) 73, 114, 142, 157, 160, 297, 447
AgsI TTSAA 1 cut(s) 970
AjnI CCWGG 2 cut(s) 141, 270
AloI GAACNNNNNNTCC 2 cut(s) 311, 343
AluBI AGCT 3 cut(s) 32, 658, 862
AluI AGCT 3 cut(s) 32, 658, 862
Alw26I GTCTC 3 cut(s) 196, 347, 594
AlwI GGATC 4 cut(s) 58, 458, 675, 801
Ama87I CYCGRG 2 cut(s) 350, 517
AoxI GGCC 7 cut(s) 99, 105, 162, 282, 429, 438, 486
ApaI GGGCCC 1 cut(s) 442
ApeKI GCWGC 5 cut(s) 25, 215, 643, 730, 799
Asp700I GAANNNNTTC 1 cut(s) 845
AspLEI GCGC 6 cut(s) 290, 533, 555, 730, 742, 903
AspS9I GGNCC 8 cut(s) 43, 117, 163, 268, 283, 430, 438, 439
AsuC2I CCSGG 3 cut(s) 41, 74, 567
AsuHPI GGTGA 1 cut(s) 940
AsuNHI GCTAGC 1 cut(s) 28
AvaI CYCGRG 2 cut(s) 350, 517
AvaII GGWCC 3 cut(s) 43, 117, 268
BaeGI GKGCMC 2 cut(s) 442, 773
BanII GRGCYC 2 cut(s) 442, 809
BbsI GAAGAC 1 cut(s) 887
BbvCI CCTCAGC 1 cut(s) 647
BbvI GCAGC 5 cut(s) 12, 202, 630, 717, 786
BccI CCATC 5 cut(s) 416, 441, 760, 850, 967
BceAI ACGGC 7 cut(s) 190, 241, 472, 718, 772, 835, 961
BcgI CGANNNNNNTGC 2 cut(s) 760, 794
BciT130I CCWGG 2 cut(s) 143, 272
BciVI GTATCC 1 cut(s) 809
BclI TGATCA 1 cut(s) 864
BcnI CCSGG 3 cut(s) 41, 74, 567
BcoDI GTCTC 3 cut(s) 196, 347, 594
BfaI CTAG 1 cut(s) 29
BfmI CTRYAG 1 cut(s) 872
BfuI GTATCC 1 cut(s) 809
BglI GCCNNNNNGGC 1 cut(s) 437
BisI GCNGC 6 cut(s) 23, 26, 216, 644, 731, 800
BlpI GCTNAGC 1 cut(s) 659
BlsI GCNGC 6 cut(s) 24, 27, 217, 645, 732, 801
Bme1390I CCNGG 5 cut(s) 41, 74, 143, 272, 567
Bme18I GGWCC 3 cut(s) 43, 117, 268
BmeT110I CYCGRG 2 cut(s) 350, 517
BmgT120I GGNCC 8 cut(s) 43, 117, 163, 268, 283, 430, 438, 439
BmiI GGNNCC 4 cut(s) 302, 440, 460, 958
BmrFI CCNGG 5 cut(s) 41, 74, 143, 272, 567
BmrI ACTGGG 2 cut(s) 166, 427
BmsI GCATC 2 cut(s) 237, 948
BmtI GCTAGC 1 cut(s) 32
BmuI ACTGGG 2 cut(s) 166, 427
BpiI GAAGAC 1 cut(s) 887
Bpu10I CCTNAGC 1 cut(s) 647
Bpu1102I GCTNAGC 1 cut(s) 659
BpuEI CTTGAG 1 cut(s) 257
BpuMI CCSGG 3 cut(s) 41, 74, 567
BsaAI YACGTR 1 cut(s) 774
BsaHI GRCGYC 1 cut(s) 923
BsaJI CCNNGG 3 cut(s) 102, 123, 279
BsaXI ACNNNNNCTCC 6 cut(s) 311, 341, 704, 734, 941, 971
Bsc4I CCNNNNNNNGG 7 cut(s) 73, 114, 142, 157, 160, 297, 447
Bse1I ACTGG 3 cut(s) 67, 161, 433
BseBI CCWGG 2 cut(s) 143, 272
BseDI CCNNGG 3 cut(s) 102, 123, 279
BseGI GGATG 4 cut(s) 147, 321, 408, 861
BseLI CCNNNNNNNGG 7 cut(s) 73, 114, 142, 157, 160, 297, 447
BseMII CTCAG 3 cut(s) 434, 638, 650
BseNI ACTGG 3 cut(s) 67, 161, 433
BseRI GAGGAG 1 cut(s) 140
BseSI GKGCMC 2 cut(s) 442, 773
BseXI GCAGC 5 cut(s) 12, 202, 630, 717, 786
BseYI CCCAGC 2 cut(s) 248, 802
Bsh1285I CGRYCG 2 cut(s) 402, 684
BshFI GGCC 7 cut(s) 101, 107, 164, 284, 431, 440, 488
BsiEI CGRYCG 2 cut(s) 402, 684
BsiHKCI CYCGRG 2 cut(s) 350, 517
BsiSI CCGG 3 cut(s) 41, 74, 566
BsiWI CGTACG 1 cut(s) 685
BslFI GGGAC 1 cut(s) 582
BslI CCNNNNNNNGG 7 cut(s) 73, 114, 142, 157, 160, 297, 447
BsmAI GTCTC 3 cut(s) 196, 347, 594
BsmBI CGTCTC 3 cut(s) 196, 347, 594
BsmFI GGGAC 1 cut(s) 582
BsnI GGCC 7 cut(s) 101, 107, 164, 284, 431, 440, 488
BsoBI CYCGRG 2 cut(s) 350, 517
Bsp120I GGGCCC 1 cut(s) 438
Bsp1286I GDGCHC 3 cut(s) 442, 773, 809
Bsp1407I TGTACA 3 cut(s) 90, 336, 828
Bsp1720I GCTNAGC 1 cut(s) 659
Bsp68I TCGCGA 2 cut(s) 422, 598
BspANI GGCC 7 cut(s) 101, 107, 164, 284, 431, 440, 488
BspCNI CTCAG 3 cut(s) 435, 639, 651
BspLI GGNNCC 4 cut(s) 302, 440, 460, 958
BspMAI CTGCAG 1 cut(s) 876
BspOI GCTAGC 1 cut(s) 32
BspPI GGATC 4 cut(s) 58, 458, 675, 801
BspQI GCTCTTC 1 cut(s) 12
BsrGI TGTACA 3 cut(s) 90, 336, 828
BsrI ACTGG 3 cut(s) 67, 161, 433
BssECI CCNNGG 3 cut(s) 102, 123, 279
BssNI GRCGYC 1 cut(s) 923
Bst2UI CCWGG 2 cut(s) 143, 272
Bst4CI ACNGT 1 cut(s) 953
Bst6I CTCTTC 2 cut(s) 12, 395
BstACI GRCGYC 1 cut(s) 923
BstAUI TGTACA 3 cut(s) 90, 336, 828
BstBAI YACGTR 1 cut(s) 774
BstC8I GCNNGC 6 cut(s) 6, 30, 286, 496, 611, 872
BstDEI CTNAG 3 cut(s) 443, 647, 659
BstENI CCTNNNNNAGG 1 cut(s) 140
BstF5I GGATG 4 cut(s) 147, 321, 408, 861
BstHHI GCGC 6 cut(s) 290, 533, 555, 730, 742, 903
BstMAI GTCTC 3 cut(s) 196, 347, 594
BstMCI CGRYCG 2 cut(s) 402, 684
BstMWI GCNNNNNNNGC 9 cut(s) 212, 428, 437, 550, 615, 640, 739, 945, 954
BstNI CCWGG 2 cut(s) 143, 272
BstSCI CCNGG 5 cut(s) 39, 72, 141, 270, 565
BstSFI CTRYAG 1 cut(s) 872
BstSLI GKGCMC 2 cut(s) 442, 773
BstV1I GCAGC 5 cut(s) 12, 202, 630, 717, 786
BstV2I GAAGAC 1 cut(s) 887
BsuI GTATCC 1 cut(s) 809
BsuRI GGCC 7 cut(s) 101, 107, 164, 284, 431, 440, 488
BtsCI GGATG 4 cut(s) 147, 321, 408, 861
BtsI GCAGTG 1 cut(s) 613
BtsIMutI CAGTG 3 cut(s) 154, 440, 613
BtuMI TCGCGA 2 cut(s) 422, 598
Cac8I GCNNGC 6 cut(s) 6, 30, 286, 496, 611, 872
CfoI GCGC 6 cut(s) 290, 533, 555, 730, 742, 903
Cfr13I GGNCC 8 cut(s) 43, 117, 163, 268, 283, 430, 438, 439
CpoI CGGWCCG 1 cut(s) 43
CseI GACGC 4 cut(s) 406, 734, 892, 912
Csp6I GTAC 8 cut(s) 70, 91, 337, 358, 637, 686, 775, 829
CspI CGGWCCG 1 cut(s) 43
CviAII CATG 1 cut(s) 962
CviQI GTAC 8 cut(s) 70, 91, 337, 358, 637, 686, 775, 829
DdeI CTNAG 3 cut(s) 443, 647, 659
DrdI GACNNNNNNGTC 1 cut(s) 230
DseDI GACNNNNNNGTC 1 cut(s) 230
Eam1104I CTCTTC 2 cut(s) 12, 395
EarI CTCTTC 2 cut(s) 12, 395
EciI GGCGGA 2 cut(s) 140, 806
Eco147I AGGCCT 1 cut(s) 107
Eco24I GRGCYC 2 cut(s) 442, 809
Eco47I GGWCC 3 cut(s) 43, 117, 268
Eco88I CYCGRG 2 cut(s) 350, 517
EcoNI CCTNNNNNAGG 1 cut(s) 140
EcoO109I RGGNCCY 2 cut(s) 163, 439
EcoRII CCWGG 2 cut(s) 141, 270
EcoT38I GRGCYC 2 cut(s) 442, 809
Esp3I CGTCTC 3 cut(s) 196, 347, 594
FaeI CATG 1 cut(s) 965
FaiI YATR 5 cut(s) 56, 139, 260, 752, 963
FalI AAGNNNNNCTT 2 cut(s) 872, 904
FaqI GGGAC 1 cut(s) 582
FatI CATG 1 cut(s) 961
FauI CCCGC 1 cut(s) 293
FbaI TGATCA 1 cut(s) 864
FblI GTMKAC 1 cut(s) 132
Fnu4HI GCNGC 6 cut(s) 23, 26, 216, 644, 731, 800
FokI GGATG 4 cut(s) 134, 308, 395, 868
FriOI GRGCYC 2 cut(s) 442, 809
Fsp4HI GCNGC 6 cut(s) 23, 26, 216, 644, 731, 800
FspBI CTAG 1 cut(s) 29
GlaI GCGC 6 cut(s) 289, 532, 554, 729, 741, 902
GluI GCNGC 6 cut(s) 23, 26, 216, 644, 731, 800
GsaI CCCAGC 2 cut(s) 252, 806
HaeIII GGCC 7 cut(s) 101, 107, 164, 284, 431, 440, 488
HapII CCGG 3 cut(s) 41, 74, 566
HgaI GACGC 4 cut(s) 406, 734, 892, 912
HhaI GCGC 6 cut(s) 290, 533, 555, 730, 742, 903
Hin1I GRCGYC 1 cut(s) 923
Hin1II CATG 1 cut(s) 965
Hin6I GCGC 6 cut(s) 288, 531, 553, 728, 740, 901
HinP1I GCGC 6 cut(s) 288, 531, 553, 728, 740, 901
HincII GTYRAC 1 cut(s) 133
HindII GTYRAC 1 cut(s) 133
HinfI GANTC 4 cut(s) 241, 368, 464, 480
HpaII CCGG 3 cut(s) 41, 74, 566
HphI GGTGA 1 cut(s) 940
Hpy166II GTNNAC 1 cut(s) 133
Hpy8I GTNNAC 1 cut(s) 133
Hpy99I CGWCG 8 cut(s) 176, 227, 377, 422, 458, 728, 908, 928
HpyAV CCTTC 9 cut(s) 19, 91, 121, 217, 256, 301, 356, 421, 913
HpyCH4III ACNGT 1 cut(s) 953
HpyCH4IV ACGT 2 cut(s) 356, 773
HpyCH4V TGCA 2 cut(s) 613, 874
HpyF10VI GCNNNNNNNGC 9 cut(s) 212, 428, 437, 550, 615, 640, 739, 945, 954
HpyF3I CTNAG 3 cut(s) 443, 647, 659
HpySE526I ACGT 2 cut(s) 356, 773
Hsp92I GRCGYC 1 cut(s) 923
Hsp92II CATG 1 cut(s) 965
HspAI GCGC 6 cut(s) 288, 531, 553, 728, 740, 901
Ksp22I TGATCA 1 cut(s) 864
LguI GCTCTTC 1 cut(s) 12
LmnI GCTCC 5 cut(s) 37, 464, 475, 859, 962
Lsp1109I GCAGC 5 cut(s) 12, 202, 630, 717, 786
LweI GCATC 2 cut(s) 237, 948
MaeI CTAG 1 cut(s) 29
MaeII ACGT 2 cut(s) 356, 773
MboII GAAGA 8 cut(s) 29, 202, 382, 436, 505, 664, 883, 892
MhlI GDGCHC 3 cut(s) 442, 773, 809
MlyI GAGTC 2 cut(s) 362, 473
MmeI TCCRAC 4 cut(s) 195, 246, 396, 606
MroXI GAANNNNTTC 1 cut(s) 845
MseI TTAA 3 cut(s) 546, 560, 675
MspA1I CMGCKG 1 cut(s) 25
MspI CCGG 3 cut(s) 41, 74, 566
MspR9I CCNGG 5 cut(s) 41, 74, 143, 272, 567
MvaI CCWGG 2 cut(s) 143, 272
MwoI GCNNNNNNNGC 9 cut(s) 212, 428, 437, 550, 615, 640, 739, 945, 954
NciI CCSGG 3 cut(s) 41, 74, 567
NheI GCTAGC 1 cut(s) 28
NlaIII CATG 1 cut(s) 965
NlaIV GGNNCC 4 cut(s) 302, 440, 460, 958
NmeAIII GCCGAG 3 cut(s) 127, 148, 304
NruI TCGCGA 2 cut(s) 422, 598
PaeR7I CTCGAG 1 cut(s) 350
PceI AGGCCT 1 cut(s) 107
PciSI GCTCTTC 1 cut(s) 12
PcsI WCGNNNNNNNCGW 3 cut(s) 219, 459, 900
PdmI GAANNNNTTC 1 cut(s) 845
PfeI GAWTC 2 cut(s) 241, 480
Pfl23II CGTACG 1 cut(s) 685
PkrI GCNGC 6 cut(s) 24, 27, 217, 645, 732, 801
Ple19I CGATCG 2 cut(s) 402, 684
PleI GAGTC 2 cut(s) 362, 472
PpsI GAGTC 2 cut(s) 362, 472
Ppu21I YACGTR 1 cut(s) 774
Psp6I CCWGG 2 cut(s) 141, 270
PspFI CCCAGC 2 cut(s) 248, 802
PspGI CCWGG 2 cut(s) 141, 270
PspLI CGTACG 1 cut(s) 685
PspN4I GGNNCC 4 cut(s) 302, 440, 460, 958
PspOMI GGGCCC 1 cut(s) 438
PspPI GGNCC 8 cut(s) 43, 117, 163, 268, 283, 430, 438, 439
PsrI GAACNNNNNNTAC 2 cut(s) 767, 799
PstI CTGCAG 1 cut(s) 876
PvuI CGATCG 2 cut(s) 402, 684
RruI TCGCGA 2 cut(s) 422, 598
RsaI GTAC 8 cut(s) 71, 92, 338, 359, 638, 687, 776, 830
RsaNI GTAC 8 cut(s) 70, 91, 337, 358, 637, 686, 775, 829
Rsr2I CGGWCCG 1 cut(s) 43
RsrII CGGWCCG 1 cut(s) 43
SalI GTCGAC 1 cut(s) 131
SapI GCTCTTC 1 cut(s) 12
SaqAI TTAA 3 cut(s) 546, 560, 675
SatI GCNGC 6 cut(s) 23, 26, 216, 644, 731, 800
Sau96I GGNCC 8 cut(s) 43, 117, 163, 268, 283, 430, 438, 439
SbfI CCTGCAGG 1 cut(s) 876
SchI GAGTC 2 cut(s) 362, 473
ScrFI CCNGG 5 cut(s) 41, 74, 143, 272, 567
SdaI CCTGCAGG 1 cut(s) 876
SduI GDGCHC 3 cut(s) 442, 773, 809
SfaNI GCATC 2 cut(s) 237, 948
SfcI CTRYAG 1 cut(s) 872
SfiI GGCCNNNNNGGCC 1 cut(s) 437
Sfr274I CTCGAG 1 cut(s) 350
SinI GGWCC 3 cut(s) 43, 117, 268
SlaI CTCGAG 1 cut(s) 350
SmlI CTYRAG 2 cut(s) 236, 350
SmoI CTYRAG 2 cut(s) 236, 350
Sse8387I CCTGCAGG 1 cut(s) 876
SseBI AGGCCT 1 cut(s) 107
SspMI CTAG 1 cut(s) 29
StuI AGGCCT 1 cut(s) 107
StyD4I CCNGG 5 cut(s) 39, 72, 141, 270, 565
TaaI ACNGT 1 cut(s) 953
TaiI ACGT 2 cut(s) 359, 776
TaqI TCGA 9 cut(s) 132, 351, 402, 453, 680, 705, 780, 849, 894
TatI WGTACW 4 cut(s) 90, 336, 636, 828
TauI GCSGC 1 cut(s) 25
TfiI GAWTC 2 cut(s) 241, 480
Tru1I TTAA 3 cut(s) 546, 560, 675
Tru9I TTAA 3 cut(s) 546, 560, 675
TscAI CASTG 3 cut(s) 161, 440, 620
TseI GCWGC 5 cut(s) 25, 215, 643, 730, 799
TspDTI ATGAA 3 cut(s) 275, 767, 947
TspGWI ACGGA 1 cut(s) 703
TspRI CASTG 3 cut(s) 161, 440, 620
VpaK11BI GGWCC 3 cut(s) 43, 117, 268
XagI CCTNNNNNAGG 1 cut(s) 140
XhoI CTCGAG 1 cut(s) 350
XmiI GTMKAC 1 cut(s) 132
XmnI GAANNNNTTC 1 cut(s) 845
XspI CTAG 1 cut(s) 29
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.