Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0013930

Physical Location & Seq

Genomic Coordinates Reverse (-)

695254 .. 696348

Gene Structure 1095 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1010500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 990 bp

ATGCCTGCCTTCCCAGAAGAGACGCTGCTAGCTCCGAACCCGGACCGCTTCTGCATGTTCCCGATCCAGTACCCTGAAATCTGGGAAATGTACAAGAAGGCGGAAGCCTCCTTCTGGACAGCCGAGGAGGTCGACCTTTGCCAGGACGTCCGCCACTGGGAAGCTCTATCCGACGGCGAGAGGCACTTTGTCTCGCACATCCTCGCCTTCTTCGCCGCTTCCGATGGAATTGTCCTGGAGAATCTTGCCGGAAGGTTCATGAAGGAGGTCCAGGTCGCCGAGGCCCGCGCCTTCTACGGGTTCCAGATCGCAATCGAGAACATCCACTCCGAGATGTACAGCCTCCTTCTCGAGACGTACATCAAGGATTCTGACGAGAAGCACCGCCTCTTCCACGCGATCGACACCATCCCCTGCGTCGCGAAGAAGGCCCAGTGGGCCCTGAGATGGATCGACGGCTCTGAGTCTTTCGCGGAGCGAATCGTGGCCTTTGCCTGCGTGGAAGGGATTTTCTTCTCTGGGAGTTTTTGCGCGATATTTTGGCTAAAAAAGCGCGGTTTAATGCCGGGACTGACTTTCTCGAACGAGCTGATCTCACGAGACGAGGGCTTGCACTGCGACTTCGCGTGTTTGCTGTACTCGCTACTGAGGCAGAAGCTGAGCGAGGATCGGATAAAGTCGATAGTTCGGAACGCGGTGGAGATCGAGAAGGAGTTCGTGTGCGACGCGCTGCCTTGCGCCCTGGTGGGGATGAACGGTGATCTGATGAGCACCTACATCGAGTTCGTCGCAGATCGGCTGCTGGGCGCGTTGGGATACGGGAAAATGTACAACGTCCAGAACCCTTTCGATTGGATGGAGCTGATCAGCCTCCAGGGGAAGACCAACTTCTTCGAGAAACGCGTCGGCGAGTACCAGAAGGCGTCGGTGATGAACAGCATCAACGGAAACGGTGGGTCCCATGAGTTTAAGATGGACGAGGATTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006139 GO:0006259 GO:0006260 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007275 GO:0008150 GO:0008152 GO:0008219 GO:0009058 GO:0009059 GO:0009987 GO:0012501 GO:0032501 GO:0032502 GO:0033554 GO:0034641 GO:0034645 GO:0043170 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0046483 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0051726 GO:0065007 GO:0071704 GO:0090304 GO:1901360 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko00480 ko00983 ko01100 ko04115 map00230 map00240 map00480 map00983 map01100 map04115

Pfam Domains

Protein Families

Ribonuc_red_sm

Protein Analysis

330

Amino Acids

37.66

Weight (kDa)

4.94

Isoelectric Point (pI)

41.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribonuc_red_sm	PF00268	16 - 282	3.2e-116	Ribonucleotide reductase, small chain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013930)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27060
fragaria_vesca	FvH4_6g53560
malus_domestica	MD00G1139000.v1.1 MD09G1010500.v1.1
prunus_persica	Prupe.3G306600_v2.0.a1
pyrus_communis	pycom111g00840 pycom17g00920
rosa_chinensis	RchiOBHm_Chr2g0175591
rosa_laevigata	RLG00000022342
rosa_multiflora	Rmu_sc0013970.1_g000001
rosa_roxburghii	Rroxscaffold_2G00077190
rosa_rugosa	Rorug02G0586600
rosa_samantha	Rh2AG665600 Rh2BG676500 Rh2CG639700 Rh2DG690500
rosa_wichuraiana	Rw2G054580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	150
AccI	GTMKAC	1 cut(s)	132
AciI	CCGC	9 cut(s)	46, 101, 151, 216, 286, 385, 473, 555, 695
AclWI	GGATC	3 cut(s)	58, 458, 675
AcyI	GRCGYC	2 cut(s)	147, 923
AfaI	GTAC	7 cut(s)	71, 92, 338, 359, 638, 830, 914
AfiI	CCNNNNNNNGG	6 cut(s)	114, 142, 157, 297, 447, 747
AflIII	ACRYGT	1 cut(s)	901
AjnI	CCWGG	5 cut(s)	141, 234, 270, 741, 873
AloI	GAACNNNNNNTCC	2 cut(s)	311, 343
AluBI	AGCT	5 cut(s)	32, 164, 589, 658, 862
AluI	AGCT	5 cut(s)	32, 164, 589, 658, 862
Alw21I	GWGCWC	1 cut(s)	773
Alw26I	GTCTC	4 cut(s)	14, 196, 347, 594
AlwI	GGATC	3 cut(s)	58, 458, 675
AlwNI	CAGNNNCTG	1 cut(s)	658
Ama87I	CYCGRG	1 cut(s)	350
AoxI	GGCC	4 cut(s)	282, 429, 438, 486
ApaI	GGGCCC	1 cut(s)	442
ApeKI	GCWGC	3 cut(s)	25, 730, 799
Asp700I	GAANNNNTTC	2 cut(s)	713, 845
AspLEI	GCGC	6 cut(s)	290, 533, 555, 730, 740, 809
AspS9I	GGNCC	7 cut(s)	43, 268, 283, 430, 438, 439, 957
AsuC2I	CCSGG	2 cut(s)	41, 567
AsuHPI	GGTGA	2 cut(s)	770, 940
AsuNHI	GCTAGC	1 cut(s)	28
AvaI	CYCGRG	1 cut(s)	350
AvaII	GGWCC	3 cut(s)	43, 268, 957
BaeGI	GKGCMC	1 cut(s)	442
BanII	GRGCYC	1 cut(s)	442
BauI	CACGAG	1 cut(s)	597
BbsI	GAAGAC	1 cut(s)	887
Bbv12I	GWGCWC	1 cut(s)	773
BbvI	GCAGC	3 cut(s)	12, 717, 786
BccI	CCATC	5 cut(s)	218, 416, 441, 850, 967
BceAI	ACGGC	2 cut(s)	190, 472
BcgI	CGANNNNNNTGC	2 cut(s)	760, 794
BciT130I	CCWGG	5 cut(s)	143, 236, 272, 743, 875
BciVI	GTATCC	1 cut(s)	809
BclI	TGATCA	1 cut(s)	864
BcnI	CCSGG	2 cut(s)	41, 567
BcoDI	GTCTC	4 cut(s)	14, 196, 347, 594
BfaI	CTAG	1 cut(s)	29
BfuI	GTATCC	1 cut(s)	809
BglI	GCCNNNNNGGC	1 cut(s)	437
BisI	GCNGC	4 cut(s)	26, 216, 731, 800
BlpI	GCTNAGC	1 cut(s)	659
BlsI	GCNGC	4 cut(s)	27, 217, 732, 801
Bme1390I	CCNGG	7 cut(s)	41, 143, 236, 272, 567, 743, 875
Bme18I	GGWCC	3 cut(s)	43, 268, 957
BmeT110I	CYCGRG	1 cut(s)	350
BmgT120I	GGNCC	7 cut(s)	43, 268, 283, 430, 438, 439, 957
BmiI	GGNNCC	4 cut(s)	302, 440, 958, 959
BmrFI	CCNGG	7 cut(s)	41, 143, 236, 272, 567, 743, 875
BmrI	ACTGGG	2 cut(s)	166, 427
BmsI	GCATC	1 cut(s)	948
BmtI	GCTAGC	1 cut(s)	32
BmuI	ACTGGG	2 cut(s)	166, 427
BpiI	GAAGAC	1 cut(s)	887
BplI	GAGNNNNNCTC	2 cut(s)	578, 610
BpmI	CTGGAG	2 cut(s)	257, 857
Bpu1102I	GCTNAGC	1 cut(s)	659
BpuMI	CCSGG	2 cut(s)	41, 567
BsaBI	GATNNNNATC	1 cut(s)	311
BsaHI	GRCGYC	2 cut(s)	147, 923
BsaJI	CCNNGG	4 cut(s)	123, 279, 741, 874
BsaXI	ACNNNNNCTCC	4 cut(s)	311, 341, 704, 734
Bsc4I	CCNNNNNNNGG	6 cut(s)	114, 142, 157, 297, 447, 747
Bse1I	ACTGG	3 cut(s)	67, 161, 433
Bse8I	GATNNNNATC	1 cut(s)	311
BseBI	CCWGG	5 cut(s)	143, 236, 272, 743, 875
BseDI	CCNNGG	4 cut(s)	123, 279, 741, 874
BseGI	GGATG	5 cut(s)	198, 321, 408, 756, 861
BseJI	GATNNNNATC	1 cut(s)	311
BseLI	CCNNNNNNNGG	6 cut(s)	114, 142, 157, 297, 447, 747
BseMII	CTCAG	4 cut(s)	434, 453, 638, 650
BseNI	ACTGG	3 cut(s)	67, 161, 433
BseRI	GAGGAG	1 cut(s)	140
BseSI	GKGCMC	1 cut(s)	442
BseXI	GCAGC	3 cut(s)	12, 717, 786
BseYI	CCCAGC	1 cut(s)	802
Bsh1285I	CGRYCG	1 cut(s)	402
BshFI	GGCC	4 cut(s)	284, 431, 440, 488
BsiEI	CGRYCG	1 cut(s)	402
BsiHKAI	GWGCWC	1 cut(s)	773
BsiHKCI	CYCGRG	1 cut(s)	350
BsiSI	CCGG	3 cut(s)	41, 249, 566
BslFI	GGGAC	2 cut(s)	582, 943
BslI	CCNNNNNNNGG	6 cut(s)	114, 142, 157, 297, 447, 747
BsmAI	GTCTC	4 cut(s)	14, 196, 347, 594
BsmBI	CGTCTC	3 cut(s)	14, 347, 594
BsmFI	GGGAC	2 cut(s)	582, 943
BsnI	GGCC	4 cut(s)	284, 431, 440, 488
BsoBI	CYCGRG	1 cut(s)	350
Bsp120I	GGGCCC	1 cut(s)	438
Bsp1286I	GDGCHC	2 cut(s)	442, 773
Bsp1407I	TGTACA	3 cut(s)	90, 336, 828
Bsp1720I	GCTNAGC	1 cut(s)	659
Bsp68I	TCGCGA	1 cut(s)	422
BspACI	CCGC	9 cut(s)	46, 101, 151, 216, 286, 385, 473, 555, 695
BspANI	GGCC	4 cut(s)	284, 431, 440, 488
BspCNI	CTCAG	4 cut(s)	435, 454, 639, 651
BspHI	TCATGA	1 cut(s)	258
BspLI	GGNNCC	4 cut(s)	302, 440, 958, 959
BspOI	GCTAGC	1 cut(s)	32
BspPI	GGATC	3 cut(s)	58, 458, 675
BsrGI	TGTACA	3 cut(s)	90, 336, 828
BsrI	ACTGG	3 cut(s)	67, 161, 433
BssECI	CCNNGG	4 cut(s)	123, 279, 741, 874
BssNI	GRCGYC	2 cut(s)	147, 923
BssSI	CACGAG	1 cut(s)	597
Bst2BI	CACGAG	1 cut(s)	597
Bst2UI	CCWGG	5 cut(s)	143, 236, 272, 743, 875
Bst4CI	ACNGT	2 cut(s)	758, 953
Bst6I	CTCTTC	2 cut(s)	12, 395
BstACI	GRCGYC	2 cut(s)	147, 923
BstAUI	TGTACA	3 cut(s)	90, 336, 828
BstC8I	GCNNGC	5 cut(s)	6, 30, 286, 496, 611
BstDEI	CTNAG	4 cut(s)	443, 462, 647, 659
BstENI	CCTNNNNNAGG	1 cut(s)	140
BstF5I	GGATG	5 cut(s)	198, 321, 408, 756, 861
BstHHI	GCGC	6 cut(s)	290, 533, 555, 730, 740, 809
BstMAI	GTCTC	4 cut(s)	14, 196, 347, 594
BstMCI	CGRYCG	1 cut(s)	402
BstMWI	GCNNNNNNNGC	7 cut(s)	212, 428, 437, 550, 615, 640, 649
BstNI	CCWGG	5 cut(s)	143, 236, 272, 743, 875
BstNSI	RCATGY	1 cut(s)	58
BstSCI	CCNGG	7 cut(s)	39, 141, 234, 270, 565, 741, 873
BstSLI	GKGCMC	1 cut(s)	442
BstV1I	GCAGC	3 cut(s)	12, 717, 786
BstV2I	GAAGAC	1 cut(s)	887
BsuI	GTATCC	1 cut(s)	809
BsuRI	GGCC	4 cut(s)	284, 431, 440, 488
BtsCI	GGATG	5 cut(s)	198, 321, 408, 756, 861
BtsI	GCAGTG	1 cut(s)	613
BtsIMutI	CAGTG	3 cut(s)	154, 440, 613
BtuMI	TCGCGA	1 cut(s)	422
Cac8I	GCNNGC	5 cut(s)	6, 30, 286, 496, 611
CaiI	CAGNNNCTG	1 cut(s)	658
CciI	TCATGA	1 cut(s)	258
CfoI	GCGC	6 cut(s)	290, 533, 555, 730, 740, 809
Cfr13I	GGNCC	7 cut(s)	43, 268, 283, 430, 438, 439, 957
CpoI	CGGWCCG	1 cut(s)	43
CseI	GACGC	5 cut(s)	31, 406, 734, 892, 912
Csp6I	GTAC	7 cut(s)	70, 91, 337, 358, 637, 829, 913
CspI	CGGWCCG	1 cut(s)	43
CviAII	CATG	3 cut(s)	55, 259, 962
CviQI	GTAC	7 cut(s)	70, 91, 337, 358, 637, 829, 913
DdeI	CTNAG	4 cut(s)	443, 462, 647, 659
Eam1104I	CTCTTC	2 cut(s)	12, 395
EarI	CTCTTC	2 cut(s)	12, 395
EciI	GGCGGA	2 cut(s)	116, 140
Eco24I	GRGCYC	1 cut(s)	442
Eco47I	GGWCC	3 cut(s)	43, 268, 957
Eco88I	CYCGRG	1 cut(s)	350
EcoNI	CCTNNNNNAGG	1 cut(s)	140
EcoO109I	RGGNCCY	2 cut(s)	439, 957
EcoRII	CCWGG	5 cut(s)	141, 234, 270, 741, 873
EcoT38I	GRGCYC	1 cut(s)	442
Esp3I	CGTCTC	3 cut(s)	14, 347, 594
FaeI	CATG	3 cut(s)	58, 262, 965
FaiI	YATR	3 cut(s)	56, 260, 963
FalI	AAGNNNNNCTT	2 cut(s)	872, 904
FaqI	GGGAC	2 cut(s)	582, 943
FatI	CATG	3 cut(s)	54, 258, 961
FauI	CCCGC	1 cut(s)	293
FbaI	TGATCA	1 cut(s)	864
FblI	GTMKAC	1 cut(s)	132
Fnu4HI	GCNGC	4 cut(s)	26, 216, 731, 800
FokI	GGATG	5 cut(s)	185, 308, 395, 763, 868
FriOI	GRGCYC	1 cut(s)	442
Fsp4HI	GCNGC	4 cut(s)	26, 216, 731, 800
FspBI	CTAG	1 cut(s)	29
GlaI	GCGC	6 cut(s)	289, 532, 554, 729, 739, 808
GluI	GCNGC	4 cut(s)	26, 216, 731, 800
GsaI	CCCAGC	1 cut(s)	806
GsuI	CTGGAG	2 cut(s)	257, 857
HaeIII	GGCC	4 cut(s)	284, 431, 440, 488
HapII	CCGG	3 cut(s)	41, 249, 566
HgaI	GACGC	5 cut(s)	31, 406, 734, 892, 912
HhaI	GCGC	6 cut(s)	290, 533, 555, 730, 740, 809
Hin1I	GRCGYC	2 cut(s)	147, 923
Hin1II	CATG	3 cut(s)	58, 262, 965
Hin6I	GCGC	6 cut(s)	288, 531, 553, 728, 738, 807
HinP1I	GCGC	6 cut(s)	288, 531, 553, 728, 738, 807
HincII	GTYRAC	1 cut(s)	133
HindII	GTYRAC	1 cut(s)	133
HinfI	GANTC	4 cut(s)	241, 368, 464, 480
HpaII	CCGG	3 cut(s)	41, 249, 566
HphI	GGTGA	2 cut(s)	770, 940
Hpy166II	GTNNAC	1 cut(s)	133
Hpy8I	GTNNAC	1 cut(s)	133
Hpy99I	CGWCG	7 cut(s)	176, 422, 458, 728, 791, 908, 928
HpyCH4III	ACNGT	2 cut(s)	758, 953
HpyCH4IV	ACGT	3 cut(s)	147, 356, 834
HpyCH4V	TGCA	2 cut(s)	54, 613
HpyF10VI	GCNNNNNNNGC	7 cut(s)	212, 428, 437, 550, 615, 640, 649
HpyF3I	CTNAG	4 cut(s)	443, 462, 647, 659
HpySE526I	ACGT	3 cut(s)	147, 356, 834
Hsp92I	GRCGYC	2 cut(s)	147, 923
Hsp92II	CATG	3 cut(s)	58, 262, 965
HspAI	GCGC	6 cut(s)	288, 531, 553, 728, 738, 807
KflI	GGGWCCC	1 cut(s)	957
Ksp22I	TGATCA	1 cut(s)	864
LmnI	GCTCC	3 cut(s)	37, 475, 859
Lsp1109I	GCAGC	3 cut(s)	12, 717, 786
LweI	GCATC	1 cut(s)	948
MaeI	CTAG	1 cut(s)	29
MaeII	ACGT	3 cut(s)	147, 356, 834
MboII	GAAGA	7 cut(s)	29, 202, 382, 436, 505, 883, 892
MhlI	GDGCHC	2 cut(s)	442, 773
MluCI	AATT	1 cut(s)	228
MluI	ACGCGT	1 cut(s)	901
MlyI	GAGTC	1 cut(s)	473
MmeI	TCCRAC	1 cut(s)	195
MroXI	GAANNNNTTC	2 cut(s)	713, 845
MseI	TTAA	2 cut(s)	560, 969
MspI	CCGG	3 cut(s)	41, 249, 566
MspR9I	CCNGG	7 cut(s)	41, 143, 236, 272, 567, 743, 875
MvaI	CCWGG	5 cut(s)	143, 236, 272, 743, 875
MwoI	GCNNNNNNNGC	7 cut(s)	212, 428, 437, 550, 615, 640, 649
NciI	CCSGG	2 cut(s)	41, 567
NheI	GCTAGC	1 cut(s)	28
NlaIII	CATG	3 cut(s)	58, 262, 965
NlaIV	GGNNCC	4 cut(s)	302, 440, 958, 959
NmeAIII	GCCGAG	2 cut(s)	148, 304
NruI	TCGCGA	1 cut(s)	422
NspI	RCATGY	1 cut(s)	58
PaeR7I	CTCGAG	1 cut(s)	350
PagI	TCATGA	1 cut(s)	258
PcsI	WCGNNNNNNNCGW	2 cut(s)	219, 900
PdmI	GAANNNNTTC	2 cut(s)	713, 845
PfeI	GAWTC	3 cut(s)	241, 368, 480
PfoI	TCCNGGA	1 cut(s)	234
PkrI	GCNGC	4 cut(s)	27, 217, 732, 801
Ple19I	CGATCG	1 cut(s)	402
PleI	GAGTC	1 cut(s)	472
PpsI	GAGTC	1 cut(s)	472
PpuMI	RGGWCCY	1 cut(s)	957
Psp5II	RGGWCCY	1 cut(s)	957
Psp6I	CCWGG	5 cut(s)	141, 234, 270, 741, 873
PspFI	CCCAGC	1 cut(s)	802
PspGI	CCWGG	5 cut(s)	141, 234, 270, 741, 873
PspN4I	GGNNCC	4 cut(s)	302, 440, 958, 959
PspOMI	GGGCCC	1 cut(s)	438
PspPI	GGNCC	7 cut(s)	43, 268, 283, 430, 438, 439, 957
PspPPI	RGGWCCY	1 cut(s)	957
PstNI	CAGNNNCTG	1 cut(s)	658
PvuI	CGATCG	1 cut(s)	402
RruI	TCGCGA	1 cut(s)	422
RsaI	GTAC	7 cut(s)	71, 92, 338, 359, 638, 830, 914
RsaNI	GTAC	7 cut(s)	70, 91, 337, 358, 637, 829, 913
Rsr2I	CGGWCCG	1 cut(s)	43
RsrII	CGGWCCG	1 cut(s)	43
SalI	GTCGAC	1 cut(s)	131
SaqAI	TTAA	2 cut(s)	560, 969
SatI	GCNGC	4 cut(s)	26, 216, 731, 800
Sau96I	GGNCC	7 cut(s)	43, 268, 283, 430, 438, 439, 957
SchI	GAGTC	1 cut(s)	473
ScrFI	CCNGG	7 cut(s)	41, 143, 236, 272, 567, 743, 875
SduI	GDGCHC	2 cut(s)	442, 773
SfaNI	GCATC	1 cut(s)	948
SfiI	GGCCNNNNNGGCC	1 cut(s)	437
Sfr274I	CTCGAG	1 cut(s)	350
SinI	GGWCC	3 cut(s)	43, 268, 957
SlaI	CTCGAG	1 cut(s)	350
SmlI	CTYRAG	1 cut(s)	350
SmoI	CTYRAG	1 cut(s)	350
Sse9I	AATT	1 cut(s)	228
SsiI	CCGC	9 cut(s)	46, 101, 151, 216, 286, 385, 473, 555, 695
SspMI	CTAG	1 cut(s)	29
StyD4I	CCNGG	7 cut(s)	39, 141, 234, 270, 565, 741, 873
TaaI	ACNGT	2 cut(s)	758, 953
TaiI	ACGT	3 cut(s)	150, 359, 837
TasI	AATT	1 cut(s)	228
TatI	WGTACW	4 cut(s)	90, 336, 636, 828
TauI	GCSGC	1 cut(s)	218
TfiI	GAWTC	3 cut(s)	241, 368, 480
Tru1I	TTAA	2 cut(s)	560, 969
Tru9I	TTAA	2 cut(s)	560, 969
TscAI	CASTG	3 cut(s)	161, 440, 620
TseI	GCWGC	3 cut(s)	25, 730, 799
TspDTI	ATGAA	4 cut(s)	247, 275, 767, 947
TspGWI	ACGGA	1 cut(s)	960
TspRI	CASTG	3 cut(s)	161, 440, 620
VpaK11BI	GGWCC	3 cut(s)	43, 268, 957
XagI	CCTNNNNNAGG	1 cut(s)	140
XceI	RCATGY	1 cut(s)	58
XhoI	CTCGAG	1 cut(s)	350
XmiI	GTMKAC	1 cut(s)	132
XmnI	GAANNNNTTC	2 cut(s)	713, 845
XspI	CTAG	1 cut(s)	29
ZraI	GACGTC	1 cut(s)	148

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.