Prupe.3G306600_v2.0.a1

Ribonucleoside-diphosphate reductase small

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0013930
Physical Location & Seq
Forward (+)
26802546 .. 26804090
1545 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G306600.1

Sequence Viewer

Length: 990 bp
ATGCCTGCCTTCCCAGAAGAGCCATTGCTTGCTCCGAACCCGGACCGCTTCTGTATGTTCCCGATCCAATACCCGGAAATCTGGGAGATGTACAAGAAGGCCGAGGCCTCCTTCTGGACCGCCGAGGAGGTTGATCTCTGCCAGGACCTACGCCATTGGGAAACTCTAACCCCTGGCGAGAAGCACTTCATCACCCACGTGCTCGCCTTCTTCGCTGCCTCTGACGGCATCGTTTTGGAGAATCTTGCCGGAAGGTTCATGAAGGAAGTCCAGGTCTCCGAGGCTCGCGCCTTCTACGGCTTCCAGATCGCCATCGAGAACATCCACTCCGAGATGTACAGCCTCCTTCTGGAGACCTACATCAAGGACTCGGACGAGAAGAACAGGCTTTTTCACGCCATCGATACCATTCCCTGCGTCACGAAGAAGGCCCAGTGGGCCCTACGCTGGATCGACGGCTCAGAATCGTTTGCGGAGCGGATCGTGGCCTTTGCTTGCGTGGAAGGGATATTCTTCTCGGGCAGTTTTTGCGCGATATTTTGGCTAAAGAAGCGCGGGTTAATGCCGGGACTGACGTTCTCAAACGAGTTAATCTCGCGAGATGAGGGTTTGCACTGCGACTTCGCGTGCTTGCTGTACTCGCTGCTGAGGAAGAAGCTGAGCGAGGATCGAGTGAAGTCGATCATACGAAACGCGGTGGAGATAGAGAGAGAGTTCGTGTGCGAAGCCTTACCGTGCGCCCTAGTGGGGATGAACGGCGATCTGATGAGCCAGTACATCGAGTTCGTGGCGGATAGGCTGCTGGGTGAGCTTGGGTACTCGAAGATTTACAATGTGCAGAACCCGTTCGATTGGATGGAGCTGATCAGCCTGCAGGGGAAGACCAATTTCTTCGAGAAGAGGGTTGGGGAGTACCAGAAGGCTTCAGTGATGAATAGCATCAACGGCAATGTCGATTCGCATATTTTCAAGATGGACGCGGATTTCTAA

Protein Analysis

330

Amino Acids

37.87

Weight (kDa)

4.99

Isoelectric Point (pI)

39.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013930)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G27060
fragaria_vesca FvH4_6g53560
malus_domestica MD00G1139000.v1.1 MD09G1010500.v1.1
prunus_persica Prupe.3G306600_v2.0.a1
pyrus_communis pycom111g00840 pycom17g00920
rosa_chinensis RchiOBHm_Chr2g0175591
rosa_laevigata RLG00000022342
rosa_multiflora Rmu_sc0013970.1_g000001
rosa_roxburghii Rroxscaffold_2G00077190
rosa_rugosa Rorug02G0586600
rosa_samantha Rh2AG665600 Rh2BG676500 Rh2CG639700 Rh2DG690500
rosa_wichuraiana Rw2G054580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 478
AccII CGCG 7 cut(s) 288, 533, 555, 598, 626, 695, 980
AciI CCGC 8 cut(s) 46, 120, 473, 478, 555, 695, 791, 980
AclWI GGATC 4 cut(s) 58, 458, 488, 675
AcuI CTGAAG 1 cut(s) 909
AcvI CACGTG 1 cut(s) 199
AfaI GTAC 6 cut(s) 92, 338, 638, 776, 818, 914
AfiI CCNNNNNNNGG 5 cut(s) 73, 114, 349, 447, 747
AgsI TTSAA 1 cut(s) 970
AjnI CCWGG 3 cut(s) 141, 172, 270
AleI CACNNNNGTG 1 cut(s) 197
AloI GAACNNNNNNTCC 2 cut(s) 311, 343
AluBI AGCT 3 cut(s) 658, 811, 862
AluI AGCT 3 cut(s) 658, 811, 862
Alw21I GWGCWC 1 cut(s) 204
Alw26I GTCTC 2 cut(s) 280, 347
AlwI GGATC 4 cut(s) 58, 458, 488, 675
Ama87I CYCGRG 1 cut(s) 517
AoxI GGCC 5 cut(s) 99, 105, 429, 438, 486
ApaI GGGCCC 1 cut(s) 442
ApeKI GCWGC 3 cut(s) 215, 643, 799
Asp700I GAANNNNTTC 2 cut(s) 185, 845
AspLEI GCGC 4 cut(s) 290, 533, 555, 740
AspS9I GGNCC 6 cut(s) 43, 117, 145, 430, 438, 439
AsuC2I CCSGG 3 cut(s) 41, 74, 567
AsuHPI GGTGA 2 cut(s) 184, 818
AvaI CYCGRG 1 cut(s) 517
AvaII GGWCC 3 cut(s) 43, 117, 145
BaeGI GKGCMC 1 cut(s) 442
BanII GRGCYC 1 cut(s) 442
BbrPI CACGTG 1 cut(s) 199
BbsI GAAGAC 1 cut(s) 887
Bbv12I GWGCWC 1 cut(s) 204
BbvCI CCTCAGC 1 cut(s) 647
BbvI GCAGC 3 cut(s) 202, 630, 786
BccI CCATC 4 cut(s) 320, 407, 850, 967
BceAI ACGGC 5 cut(s) 241, 313, 472, 772, 961
BciT130I CCWGG 3 cut(s) 143, 174, 272
BclI TGATCA 1 cut(s) 864
BcnI CCSGG 3 cut(s) 41, 74, 567
BcoDI GTCTC 2 cut(s) 280, 347
BfaI CTAG 1 cut(s) 743
BfmI CTRYAG 1 cut(s) 872
BglI GCCNNNNNGGC 1 cut(s) 437
BisI GCNGC 3 cut(s) 216, 644, 800
BlpI GCTNAGC 1 cut(s) 659
BlsI GCNGC 3 cut(s) 217, 645, 801
Bme1390I CCNGG 6 cut(s) 41, 74, 143, 174, 272, 567
Bme18I GGWCC 3 cut(s) 43, 117, 145
BmeT110I CYCGRG 1 cut(s) 517
BmgT120I GGNCC 6 cut(s) 43, 117, 145, 430, 438, 439
BmiI GGNNCC 1 cut(s) 440
BmrFI CCNGG 6 cut(s) 41, 74, 143, 174, 272, 567
BmrI ACTGGG 1 cut(s) 427
BmsI GCATC 2 cut(s) 237, 948
BmuI ACTGGG 1 cut(s) 427
BpiI GAAGAC 1 cut(s) 887
BplI GAGNNNNNCTC 2 cut(s) 578, 610
BpmI CTGGAG 1 cut(s) 371
Bpu10I CCTNAGC 1 cut(s) 647
Bpu1102I GCTNAGC 1 cut(s) 659
BpuMI CCSGG 3 cut(s) 41, 74, 567
Bsa29I ATCGAT 1 cut(s) 402
BsaAI YACGTR 1 cut(s) 199
BsaBI GATNNNNATC 1 cut(s) 311
BsaI GGTCTC 2 cut(s) 280, 347
BsaJI CCNNGG 4 cut(s) 102, 123, 172, 279
BsaXI ACNNNNNCTCC 2 cut(s) 311, 341
Bsc4I CCNNNNNNNGG 5 cut(s) 73, 114, 349, 447, 747
Bse1I ACTGG 2 cut(s) 433, 772
Bse3DI GCAATG 2 cut(s) 23, 955
Bse8I GATNNNNATC 1 cut(s) 311
BseBI CCWGG 3 cut(s) 143, 174, 272
BseCI ATCGAT 1 cut(s) 402
BseDI CCNNGG 4 cut(s) 102, 123, 172, 279
BseGI GGATG 3 cut(s) 321, 756, 861
BseJI GATNNNNATC 1 cut(s) 311
BseLI CCNNNNNNNGG 5 cut(s) 73, 114, 349, 447, 747
BseMI GCAATG 2 cut(s) 23, 955
BseMII CTCAG 3 cut(s) 474, 638, 650
BseNI ACTGG 2 cut(s) 433, 772
BseRI GAGGAG 1 cut(s) 140
BseSI GKGCMC 1 cut(s) 442
BseXI GCAGC 3 cut(s) 202, 630, 786
BseYI CCCAGC 1 cut(s) 802
BsgI GTGCAG 1 cut(s) 857
Bsh1236I CGCG 7 cut(s) 288, 533, 555, 598, 626, 695, 980
BshFI GGCC 5 cut(s) 101, 107, 431, 440, 488
BshVI ATCGAT 1 cut(s) 402
BsiHKAI GWGCWC 1 cut(s) 204
BsiHKCI CYCGRG 1 cut(s) 517
BsiSI CCGG 4 cut(s) 41, 74, 249, 566
BslFI GGGAC 1 cut(s) 582
BslI CCNNNNNNNGG 5 cut(s) 73, 114, 349, 447, 747
BsmAI GTCTC 2 cut(s) 280, 347
BsmFI GGGAC 1 cut(s) 582
BsnI GGCC 5 cut(s) 101, 107, 431, 440, 488
Bso31I GGTCTC 2 cut(s) 280, 347
BsoBI CYCGRG 1 cut(s) 517
Bsp120I GGGCCC 1 cut(s) 438
Bsp1286I GDGCHC 2 cut(s) 204, 442
Bsp1407I TGTACA 2 cut(s) 90, 336
Bsp143I GATC 9 cut(s) 63, 133, 306, 450, 480, 667, 681, 760, 864
Bsp1720I GCTNAGC 1 cut(s) 659
Bsp68I TCGCGA 1 cut(s) 598
BspACI CCGC 8 cut(s) 46, 120, 473, 478, 555, 695, 791, 980
BspANI GGCC 5 cut(s) 101, 107, 431, 440, 488
BspCNI CTCAG 3 cut(s) 473, 639, 651
BspDI ATCGAT 1 cut(s) 402
BspFNI CGCG 7 cut(s) 288, 533, 555, 598, 626, 695, 980
BspHI TCATGA 1 cut(s) 258
BspLI GGNNCC 1 cut(s) 440
BspMAI CTGCAG 1 cut(s) 876
BspPI GGATC 4 cut(s) 58, 458, 488, 675
BspQI GCTCTTC 1 cut(s) 12
BspTNI GGTCTC 2 cut(s) 280, 347
BsrBI CCGCTC 1 cut(s) 478
BsrDI GCAATG 2 cut(s) 23, 955
BsrGI TGTACA 2 cut(s) 90, 336
BsrI ACTGG 2 cut(s) 433, 772
BssECI CCNNGG 4 cut(s) 102, 123, 172, 279
BssMI GATC 9 cut(s) 63, 133, 306, 450, 480, 667, 681, 760, 864
Bst2UI CCWGG 3 cut(s) 143, 174, 272
Bst4CI ACNGT 1 cut(s) 735
Bst6I CTCTTC 2 cut(s) 12, 893
BstAPI GCANNNNNTGC 1 cut(s) 528
BstAUI TGTACA 2 cut(s) 90, 336
BstBAI YACGTR 1 cut(s) 199
BstC8I GCNNGC 8 cut(s) 6, 30, 204, 286, 496, 628, 632, 872
BstDEI CTNAG 3 cut(s) 460, 647, 659
BstF5I GGATG 3 cut(s) 321, 756, 861
BstFNI CGCG 7 cut(s) 288, 533, 555, 598, 626, 695, 980
BstHHI GCGC 4 cut(s) 290, 533, 555, 740
BstKTI GATC 9 cut(s) 66, 136, 309, 453, 483, 670, 684, 763, 867
BstMAI GTCTC 2 cut(s) 280, 347
BstMBI GATC 9 cut(s) 63, 133, 306, 450, 480, 667, 681, 760, 864
BstMWI GCNNNNNNNGC 7 cut(s) 212, 437, 528, 550, 640, 808, 945
BstNI CCWGG 3 cut(s) 143, 174, 272
BstSCI CCNGG 6 cut(s) 39, 72, 141, 172, 270, 565
BstSFI CTRYAG 1 cut(s) 872
BstSLI GKGCMC 1 cut(s) 442
BstUI CGCG 7 cut(s) 288, 533, 555, 598, 626, 695, 980
BstV1I GCAGC 3 cut(s) 202, 630, 786
BstV2I GAAGAC 1 cut(s) 887
Bsu15I ATCGAT 1 cut(s) 402
BsuRI GGCC 5 cut(s) 101, 107, 431, 440, 488
BsuTUI ATCGAT 1 cut(s) 402
BtsCI GGATG 3 cut(s) 321, 756, 861
BtsI GCAGTG 1 cut(s) 613
BtsIMutI CAGTG 3 cut(s) 440, 613, 933
BtuMI TCGCGA 1 cut(s) 598
Cac8I GCNNGC 8 cut(s) 6, 30, 204, 286, 496, 628, 632, 872
CciI TCATGA 1 cut(s) 258
CfoI GCGC 4 cut(s) 290, 533, 555, 740
Cfr13I GGNCC 6 cut(s) 43, 117, 145, 430, 438, 439
ClaI ATCGAT 1 cut(s) 402
CpoI CGGWCCG 1 cut(s) 43
CseI GACGC 1 cut(s) 406
Csp6I GTAC 6 cut(s) 91, 337, 637, 775, 817, 913
CspI CGGWCCG 1 cut(s) 43
CviAII CATG 1 cut(s) 259
CviQI GTAC 6 cut(s) 91, 337, 637, 775, 817, 913
DdeI CTNAG 3 cut(s) 460, 647, 659
DpnI GATC 9 cut(s) 65, 135, 308, 452, 482, 669, 683, 762, 866
DpnII GATC 9 cut(s) 63, 133, 306, 450, 480, 667, 681, 760, 864
Eam1104I CTCTTC 2 cut(s) 12, 893
EarI CTCTTC 2 cut(s) 12, 893
EciI GGCGGA 1 cut(s) 806
Eco147I AGGCCT 1 cut(s) 107
Eco24I GRGCYC 1 cut(s) 442
Eco31I GGTCTC 2 cut(s) 280, 347
Eco47I GGWCC 3 cut(s) 43, 117, 145
Eco57I CTGAAG 1 cut(s) 909
Eco72I CACGTG 1 cut(s) 199
Eco88I CYCGRG 1 cut(s) 517
EcoO109I RGGNCCY 2 cut(s) 145, 439
EcoRII CCWGG 3 cut(s) 141, 172, 270
EcoT38I GRGCYC 1 cut(s) 442
FaeI CATG 1 cut(s) 262
FaiI YATR 4 cut(s) 56, 260, 686, 963
FaqI GGGAC 1 cut(s) 582
FatI CATG 1 cut(s) 258
FauI CCCGC 1 cut(s) 548
FbaI TGATCA 1 cut(s) 864
Fnu4HI GCNGC 3 cut(s) 216, 644, 800
FokI GGATG 3 cut(s) 308, 763, 868
FriOI GRGCYC 1 cut(s) 442
Fsp4HI GCNGC 3 cut(s) 216, 644, 800
FspBI CTAG 1 cut(s) 743
GlaI GCGC 4 cut(s) 289, 532, 554, 739
GluI GCNGC 3 cut(s) 216, 644, 800
GsaI CCCAGC 1 cut(s) 806
GsuI CTGGAG 1 cut(s) 371
HaeIII GGCC 5 cut(s) 101, 107, 431, 440, 488
HapII CCGG 4 cut(s) 41, 74, 249, 566
HgaI GACGC 1 cut(s) 406
HhaI GCGC 4 cut(s) 290, 533, 555, 740
Hin1II CATG 1 cut(s) 262
Hin6I GCGC 4 cut(s) 288, 531, 553, 738
HinP1I GCGC 4 cut(s) 288, 531, 553, 738
HinfI GANTC 4 cut(s) 241, 368, 464, 956
HpaII CCGG 4 cut(s) 41, 74, 249, 566
HphI GGTGA 2 cut(s) 184, 818
Hpy188I TCNGA 7 cut(s) 36, 223, 280, 331, 373, 463, 765
Hpy99I CGWCG 1 cut(s) 458
HpyCH4III ACNGT 1 cut(s) 735
HpyCH4IV ACGT 2 cut(s) 198, 575
HpyCH4V TGCA 3 cut(s) 613, 838, 874
HpyF10VI GCNNNNNNNGC 7 cut(s) 212, 437, 528, 550, 640, 808, 945
HpyF3I CTNAG 3 cut(s) 460, 647, 659
HpySE526I ACGT 2 cut(s) 198, 575
Hsp92II CATG 1 cut(s) 262
HspAI GCGC 4 cut(s) 288, 531, 553, 738
Ksp22I TGATCA 1 cut(s) 864
Kzo9I GATC 9 cut(s) 63, 133, 306, 450, 480, 667, 681, 760, 864
LguI GCTCTTC 1 cut(s) 12
LmnI GCTCC 3 cut(s) 37, 475, 859
Lsp1109I GCAGC 3 cut(s) 202, 630, 786
LweI GCATC 2 cut(s) 237, 948
MaeI CTAG 1 cut(s) 743
MaeII ACGT 2 cut(s) 198, 575
MaeIII GTNAC 1 cut(s) 418
MalI GATC 9 cut(s) 65, 135, 308, 452, 482, 669, 683, 762, 866
MbiI CCGCTC 1 cut(s) 478
MboI GATC 9 cut(s) 63, 133, 306, 450, 480, 667, 681, 760, 864
MhlI GDGCHC 2 cut(s) 204, 442
MluCI AATT 1 cut(s) 886
MlyI GAGTC 1 cut(s) 362
MroXI GAANNNNTTC 2 cut(s) 185, 845
MseI TTAA 2 cut(s) 560, 590
MslI CAYNNNNRTG 1 cut(s) 197
MspI CCGG 4 cut(s) 41, 74, 249, 566
MspR9I CCNGG 6 cut(s) 41, 74, 143, 174, 272, 567
MvaI CCWGG 3 cut(s) 143, 174, 272
MvnI CGCG 7 cut(s) 288, 533, 555, 598, 626, 695, 980
MwoI GCNNNNNNNGC 7 cut(s) 212, 437, 528, 550, 640, 808, 945
NciI CCSGG 3 cut(s) 41, 74, 567
NdeII GATC 9 cut(s) 63, 133, 306, 450, 480, 667, 681, 760, 864
NlaIII CATG 1 cut(s) 262
NlaIV GGNNCC 1 cut(s) 440
NmeAIII GCCGAG 2 cut(s) 127, 148
NmuCI GTSAC 1 cut(s) 418
NruI TCGCGA 1 cut(s) 598
OliI CACNNNNGTG 1 cut(s) 197
PagI TCATGA 1 cut(s) 258
PceI AGGCCT 1 cut(s) 107
PciSI GCTCTTC 1 cut(s) 12
PcsI WCGNNNNNNNCGW 1 cut(s) 951
PdmI GAANNNNTTC 2 cut(s) 185, 845
PfeI GAWTC 3 cut(s) 241, 464, 956
PkrI GCNGC 3 cut(s) 217, 645, 801
PleI GAGTC 1 cut(s) 362
PmaCI CACGTG 1 cut(s) 199
PmlI CACGTG 1 cut(s) 199
PpsI GAGTC 1 cut(s) 362
Ppu21I YACGTR 1 cut(s) 199
PpuMI RGGWCCY 1 cut(s) 145
Psp5II RGGWCCY 1 cut(s) 145
Psp6I CCWGG 3 cut(s) 141, 172, 270
PspCI CACGTG 1 cut(s) 199
PspFI CCCAGC 1 cut(s) 802
PspGI CCWGG 3 cut(s) 141, 172, 270
PspN4I GGNNCC 1 cut(s) 440
PspOMI GGGCCC 1 cut(s) 438
PspPI GGNCC 6 cut(s) 43, 117, 145, 430, 438, 439
PspPPI RGGWCCY 1 cut(s) 145
PsrI GAACNNNNNNTAC 2 cut(s) 767, 799
PstI CTGCAG 1 cut(s) 876
RruI TCGCGA 1 cut(s) 598
RsaI GTAC 6 cut(s) 92, 338, 638, 776, 818, 914
RsaNI GTAC 6 cut(s) 91, 337, 637, 775, 817, 913
RseI CAYNNNNRTG 1 cut(s) 197
Rsr2I CGGWCCG 1 cut(s) 43
RsrII CGGWCCG 1 cut(s) 43
SapI GCTCTTC 1 cut(s) 12
SaqAI TTAA 2 cut(s) 560, 590
SatI GCNGC 3 cut(s) 216, 644, 800
Sau3AI GATC 9 cut(s) 63, 133, 306, 450, 480, 667, 681, 760, 864
Sau96I GGNCC 6 cut(s) 43, 117, 145, 430, 438, 439
SbfI CCTGCAGG 1 cut(s) 876
SchI GAGTC 1 cut(s) 362
ScrFI CCNGG 6 cut(s) 41, 74, 143, 174, 272, 567
SdaI CCTGCAGG 1 cut(s) 876
SduI GDGCHC 2 cut(s) 204, 442
SfaNI GCATC 2 cut(s) 237, 948
SfcI CTRYAG 1 cut(s) 872
SfiI GGCCNNNNNGGCC 1 cut(s) 437
SinI GGWCC 3 cut(s) 43, 117, 145
SmiMI CAYNNNNRTG 1 cut(s) 197
Sse8387I CCTGCAGG 1 cut(s) 876
Sse9I AATT 1 cut(s) 886
SseBI AGGCCT 1 cut(s) 107
SsiI CCGC 8 cut(s) 46, 120, 473, 478, 555, 695, 791, 980
SspMI CTAG 1 cut(s) 743
StuI AGGCCT 1 cut(s) 107
StyD4I CCNGG 6 cut(s) 39, 72, 141, 172, 270, 565
TaaI ACNGT 1 cut(s) 735
TaiI ACGT 2 cut(s) 201, 578
TasI AATT 1 cut(s) 886
TatI WGTACW 4 cut(s) 90, 336, 636, 774
TfiI GAWTC 3 cut(s) 241, 464, 956
Tru1I TTAA 2 cut(s) 560, 590
Tru9I TTAA 2 cut(s) 560, 590
TscAI CASTG 3 cut(s) 440, 620, 933
TseFI GTSAC 1 cut(s) 418
TseI GCWGC 3 cut(s) 215, 643, 799
Tsp45I GTSAC 1 cut(s) 418
TspDTI ATGAA 5 cut(s) 178, 247, 275, 767, 947
TspRI CASTG 3 cut(s) 440, 620, 933
VpaK11BI GGWCC 3 cut(s) 43, 117, 145
XmnI GAANNNNTTC 2 cut(s) 185, 845
XspI CTAG 1 cut(s) 743
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.