pycom17g00920

Ribonucleoside-diphosphate reductase small

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0013930
Physical Location & Seq
Reverse (-)
665790 .. 667570
1781 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom17g00920.2

Sequence Viewer

Length: 1137 bp
ATGCAGATTACATATATAGTTGTTCAAGTTCATAAACCCTCCGCCCTCTCTATATATATTCGGTCCAATCCCACCGAATTAATTCAACCCCAAGACGCAGAATTTGAAAATCCCCCAAAATTCTCCGTTCGAATTTCATCACAAAAGATGCCTGCCTTCCCAGAAGAGCCGCTGCTAGCTCCGAACCCGGACCGCTTCTGTATGTTTCCGATCCAGTACCCGGAAATATGGGAAATGTACAAGAAGGCCGAGGCATCCTTCTGGACCGCCGAGGAGGTCGACCTATGCCAGGACATCCGCCACTGGGAAGCCCTATCCGACGGCGAGAGGCACTTCGTCTCGCACATTCTCGCCTTCTTCGCTGCCTCCGACGGCATCGTCCTTGAAAATCTCGCTGGGAGGTTTATGAAGGAGGTTCAGGTCGCCGAGGCCCGCGCCTTCTACGGGTTCCAGATCGCCATTGAGAACATCCACTCCGAGATGTACAGCCTCCTTCTCGAGACGTACATCAAGGACTCCGACGAGAAGCACCGCCTCTTCCACGCGATCGACATCATCCCCTGCGTCGCGAAGAAGGCCCACTGGGCCCTGAGATGGATCGACGGCTCCGAGTCTTTCGCGGAGCGAATCGTGGCTTTTGCCTGCGTGGAGGGGATTTTCTTCTCGGGGAGTTTCTGCGCGATATTTTGGCTTAAAAAGCGCGGTTTAATGCCGGGACTGACTTTCTCCAACGAGCTGATCTCACGAGACGAGGGCTTGCACTGCGACTTCGCGTGTTTGCTGTATTCACTGCTGAGGAAGAAACTGAGCGAGGATCGGGTTAAGTCGATCGTACGGAACGCGGTAGAGATCGAGACGGAGTTCGTGTGCGATGCACTGCCGTGTGCGCTGGTGGGGATGAACGGCGATCTGATGGGCACGTACATAGAGTTCGTGGCGGATCGGCTGCTGGGCTCGTTGGGATACGGCAAGATGTACAATGTCCAGAACCCGTTCGATTGGATGGAGCTGATCAGCCTGCAGGGGAAGACCAACTTCTTTGAGAAGCGCGTCGGCGAGTATCAGAAGGCGTCGGTGATGAACAGCATCAACGGCAACGGTGGCTCCCATGAGTTCAAGATGGACGAGGATTTCTGA

Protein Analysis

379

Amino Acids

43.25

Weight (kDa)

5.14

Isoelectric Point (pI)

43.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013930)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G27060
fragaria_vesca FvH4_6g53560
malus_domestica MD00G1139000.v1.1 MD09G1010500.v1.1
prunus_persica Prupe.3G306600_v2.0.a1
pyrus_communis pycom111g00840 pycom17g00920
rosa_chinensis RchiOBHm_Chr2g0175591
rosa_laevigata RLG00000022342
rosa_multiflora Rmu_sc0013970.1_g000001
rosa_roxburghii Rroxscaffold_2G00077190
rosa_rugosa Rorug02G0586600
rosa_samantha Rh2AG665600 Rh2BG676500 Rh2CG639700 Rh2DG690500
rosa_wichuraiana Rw2G054580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 377
AccI GTMKAC 1 cut(s) 279
AccII CGCG 9 cut(s) 435, 545, 569, 620, 680, 702, 773, 842, 1050
AclWI GGATC 4 cut(s) 205, 605, 822, 948
AcsI RAATTY 3 cut(s) 101, 119, 132
AcyI GRCGYC 1 cut(s) 1070
AfaI GTAC 7 cut(s) 218, 239, 485, 506, 834, 923, 977
AfiI CCNNNNNNNGG 5 cut(s) 220, 289, 304, 444, 594
AgsI TTSAA 5 cut(s) 26, 86, 107, 386, 1117
AjnI CCWGG 1 cut(s) 288
AleI CACNNNNGTG 1 cut(s) 880
AloI GAACNNNNNNTCC 2 cut(s) 458, 490
AluBI AGCT 3 cut(s) 179, 736, 1009
AluI AGCT 3 cut(s) 179, 736, 1009
Alw26I GTCTC 4 cut(s) 343, 494, 741, 848
AlwI GGATC 4 cut(s) 205, 605, 822, 948
Ama87I CYCGRG 2 cut(s) 497, 664
AoxI GGCC 4 cut(s) 246, 429, 576, 585
ApaI GGGCCC 1 cut(s) 589
ApeKI GCWGC 3 cut(s) 172, 362, 946
ApoI RAATTY 3 cut(s) 101, 119, 132
ArsI GACNNNNNNTTYG 2 cut(s) 86, 118
AseI ATTAAT 1 cut(s) 80
Asp700I GAANNNNTTC 2 cut(s) 81, 992
AspLEI GCGC 5 cut(s) 437, 680, 702, 889, 1050
AspS9I GGNCC 7 cut(s) 63, 190, 264, 430, 577, 585, 586
AsuC2I CCSGG 3 cut(s) 188, 221, 714
AsuHPI GGTGA 1 cut(s) 1087
AsuII TTCGAA 1 cut(s) 130
AsuNHI GCTAGC 1 cut(s) 175
AvaI CYCGRG 2 cut(s) 497, 664
AvaII GGWCC 3 cut(s) 63, 190, 264
BaeGI GKGCMC 2 cut(s) 589, 920
BanII GRGCYC 2 cut(s) 589, 956
BauI CACGAG 1 cut(s) 744
BbsI GAAGAC 1 cut(s) 1034
BbvCI CCTCAGC 1 cut(s) 794
BbvI GCAGC 3 cut(s) 159, 349, 933
BccI CCATC 4 cut(s) 588, 907, 997, 1114
BceAI ACGGC 7 cut(s) 337, 388, 619, 865, 919, 982, 1108
BciT130I CCWGG 1 cut(s) 290
BciVI GTATCC 1 cut(s) 956
BclI TGATCA 1 cut(s) 1011
BcnI CCSGG 3 cut(s) 188, 221, 714
BcoDI GTCTC 4 cut(s) 343, 494, 741, 848
BfaI CTAG 1 cut(s) 176
BfmI CTRYAG 1 cut(s) 1019
BfuI GTATCC 1 cut(s) 956
BglI GCCNNNNNGGC 1 cut(s) 584
BisI GCNGC 4 cut(s) 170, 173, 363, 947
BlsI GCNGC 4 cut(s) 171, 174, 364, 948
Bme1390I CCNGG 4 cut(s) 188, 221, 290, 714
Bme18I GGWCC 3 cut(s) 63, 190, 264
BmeT110I CYCGRG 2 cut(s) 497, 664
BmgT120I GGNCC 7 cut(s) 63, 190, 264, 430, 577, 585, 586
BmiI GGNNCC 4 cut(s) 449, 587, 607, 1105
BmrFI CCNGG 4 cut(s) 188, 221, 290, 714
BmrI ACTGGG 2 cut(s) 313, 592
BmsI GCATC 5 cut(s) 138, 263, 384, 862, 1095
BmtI GCTAGC 1 cut(s) 179
BmuI ACTGGG 2 cut(s) 313, 592
BpiI GAAGAC 1 cut(s) 1034
BplI GAGNNNNNCTC 2 cut(s) 725, 757
Bpu10I CCTNAGC 1 cut(s) 794
Bpu14I TTCGAA 1 cut(s) 130
BpuMI CCSGG 3 cut(s) 188, 221, 714
BsaAI YACGTR 1 cut(s) 921
BsaBI GATNNNNATC 1 cut(s) 551
BsaHI GRCGYC 1 cut(s) 1070
BsaJI CCNNGG 3 cut(s) 249, 270, 426
BsaXI ACNNNNNCTCC 6 cut(s) 458, 488, 851, 881, 1088, 1118
Bsc4I CCNNNNNNNGG 5 cut(s) 220, 289, 304, 444, 594
Bse1I ACTGG 3 cut(s) 214, 308, 587
Bse8I GATNNNNATC 1 cut(s) 551
BseBI CCWGG 1 cut(s) 290
BseDI CCNNGG 3 cut(s) 249, 270, 426
BseGI GGATG 6 cut(s) 254, 294, 468, 555, 903, 1008
BseJI GATNNNNATC 1 cut(s) 551
BseLI CCNNNNNNNGG 5 cut(s) 220, 289, 304, 444, 594
BseMII CTCAG 3 cut(s) 581, 785, 797
BseNI ACTGG 3 cut(s) 214, 308, 587
BseRI GAGGAG 1 cut(s) 287
BseSI GKGCMC 2 cut(s) 589, 920
BseXI GCAGC 3 cut(s) 159, 349, 933
BseYI CCCAGC 2 cut(s) 395, 949
Bsh1236I CGCG 9 cut(s) 435, 545, 569, 620, 680, 702, 773, 842, 1050
Bsh1285I CGRYCG 2 cut(s) 549, 831
BshFI GGCC 4 cut(s) 248, 431, 578, 587
BsiEI CGRYCG 2 cut(s) 549, 831
BsiHKCI CYCGRG 2 cut(s) 497, 664
BsiSI CCGG 3 cut(s) 188, 221, 713
BsiWI CGTACG 1 cut(s) 832
BslFI GGGAC 1 cut(s) 729
BslI CCNNNNNNNGG 5 cut(s) 220, 289, 304, 444, 594
BsmAI GTCTC 4 cut(s) 343, 494, 741, 848
BsmBI CGTCTC 4 cut(s) 343, 494, 741, 848
BsmFI GGGAC 1 cut(s) 729
BsnI GGCC 4 cut(s) 248, 431, 578, 587
BsoBI CYCGRG 2 cut(s) 497, 664
Bsp119I TTCGAA 1 cut(s) 130
Bsp120I GGGCCC 1 cut(s) 585
Bsp1286I GDGCHC 3 cut(s) 589, 920, 956
Bsp1407I TGTACA 3 cut(s) 237, 483, 975
Bsp68I TCGCGA 1 cut(s) 569
BspANI GGCC 4 cut(s) 248, 431, 578, 587
BspCNI CTCAG 3 cut(s) 582, 786, 798
BspFNI CGCG 9 cut(s) 435, 545, 569, 620, 680, 702, 773, 842, 1050
BspLI GGNNCC 4 cut(s) 449, 587, 607, 1105
BspMAI CTGCAG 1 cut(s) 1023
BspOI GCTAGC 1 cut(s) 179
BspPI GGATC 4 cut(s) 205, 605, 822, 948
BspQI GCTCTTC 1 cut(s) 159
BspT104I TTCGAA 1 cut(s) 130
BsrGI TGTACA 3 cut(s) 237, 483, 975
BsrI ACTGG 3 cut(s) 214, 308, 587
BssECI CCNNGG 3 cut(s) 249, 270, 426
BssNI GRCGYC 1 cut(s) 1070
BssSI CACGAG 1 cut(s) 744
Bst2BI CACGAG 1 cut(s) 744
Bst2UI CCWGG 1 cut(s) 290
Bst4CI ACNGT 1 cut(s) 1100
Bst6I CTCTTC 2 cut(s) 159, 542
BstACI GRCGYC 1 cut(s) 1070
BstAUI TGTACA 3 cut(s) 237, 483, 975
BstBAI YACGTR 1 cut(s) 921
BstBI TTCGAA 1 cut(s) 130
BstC8I GCNNGC 6 cut(s) 153, 177, 433, 643, 758, 1019
BstDEI CTNAG 3 cut(s) 590, 794, 806
BstENI CCTNNNNNAGG 1 cut(s) 287
BstF5I GGATG 6 cut(s) 254, 294, 468, 555, 903, 1008
BstFNI CGCG 9 cut(s) 435, 545, 569, 620, 680, 702, 773, 842, 1050
BstHHI GCGC 5 cut(s) 437, 680, 702, 889, 1050
BstMAI GTCTC 4 cut(s) 343, 494, 741, 848
BstMCI CGRYCG 2 cut(s) 549, 831
BstMWI GCNNNNNNNGC 8 cut(s) 359, 575, 584, 697, 762, 886, 1092, 1101
BstNI CCWGG 1 cut(s) 290
BstSCI CCNGG 4 cut(s) 186, 219, 288, 712
BstSFI CTRYAG 1 cut(s) 1019
BstSLI GKGCMC 2 cut(s) 589, 920
BstUI CGCG 9 cut(s) 435, 545, 569, 620, 680, 702, 773, 842, 1050
BstV1I GCAGC 3 cut(s) 159, 349, 933
BstV2I GAAGAC 1 cut(s) 1034
BsuI GTATCC 1 cut(s) 956
BsuRI GGCC 4 cut(s) 248, 431, 578, 587
BtgZI GCGATG 1 cut(s) 885
BtsCI GGATG 6 cut(s) 254, 294, 468, 555, 903, 1008
BtsI GCAGTG 3 cut(s) 760, 788, 875
BtsIMutI CAGTG 5 cut(s) 301, 580, 760, 788, 875
BtuMI TCGCGA 1 cut(s) 569
Cac8I GCNNGC 6 cut(s) 153, 177, 433, 643, 758, 1019
CfoI GCGC 5 cut(s) 437, 680, 702, 889, 1050
Cfr13I GGNCC 7 cut(s) 63, 190, 264, 430, 577, 585, 586
CpoI CGGWCCG 1 cut(s) 190
CseI GACGC 4 cut(s) 104, 553, 1039, 1059
Csp6I GTAC 7 cut(s) 217, 238, 484, 505, 833, 922, 976
CspI CGGWCCG 1 cut(s) 190
CviAII CATG 1 cut(s) 1109
CviQI GTAC 7 cut(s) 217, 238, 484, 505, 833, 922, 976
DdeI CTNAG 3 cut(s) 590, 794, 806
DrdI GACNNNNNNGTC 1 cut(s) 377
DseDI GACNNNNNNGTC 1 cut(s) 377
Eam1104I CTCTTC 2 cut(s) 159, 542
EarI CTCTTC 2 cut(s) 159, 542
EciI GGCGGA 3 cut(s) 31, 287, 953
Eco24I GRGCYC 2 cut(s) 589, 956
Eco47I GGWCC 3 cut(s) 63, 190, 264
Eco88I CYCGRG 2 cut(s) 497, 664
EcoNI CCTNNNNNAGG 1 cut(s) 287
EcoO109I RGGNCCY 1 cut(s) 586
EcoRII CCWGG 1 cut(s) 288
EcoT38I GRGCYC 2 cut(s) 589, 956
Esp3I CGTCTC 4 cut(s) 343, 494, 741, 848
FaeI CATG 1 cut(s) 1112
FalI AAGNNNNNCTT 2 cut(s) 1019, 1051
FaqI GGGAC 1 cut(s) 729
FatI CATG 1 cut(s) 1108
FauI CCCGC 1 cut(s) 440
FbaI TGATCA 1 cut(s) 1011
FblI GTMKAC 1 cut(s) 279
Fnu4HI GCNGC 4 cut(s) 170, 173, 363, 947
FokI GGATG 6 cut(s) 241, 281, 455, 542, 910, 1015
FriOI GRGCYC 2 cut(s) 589, 956
Fsp4HI GCNGC 4 cut(s) 170, 173, 363, 947
FspBI CTAG 1 cut(s) 176
GlaI GCGC 5 cut(s) 436, 679, 701, 888, 1049
GluI GCNGC 4 cut(s) 170, 173, 363, 947
GsaI CCCAGC 2 cut(s) 399, 953
HaeIII GGCC 4 cut(s) 248, 431, 578, 587
HapII CCGG 3 cut(s) 188, 221, 713
HgaI GACGC 4 cut(s) 104, 553, 1039, 1059
HhaI GCGC 5 cut(s) 437, 680, 702, 889, 1050
Hin1I GRCGYC 1 cut(s) 1070
Hin1II CATG 1 cut(s) 1112
Hin6I GCGC 5 cut(s) 435, 678, 700, 887, 1048
HinP1I GCGC 5 cut(s) 435, 678, 700, 887, 1048
HincII GTYRAC 1 cut(s) 280
HindII GTYRAC 1 cut(s) 280
HinfI GANTC 3 cut(s) 515, 611, 627
HpaII CCGG 3 cut(s) 188, 221, 713
HphI GGTGA 1 cut(s) 1087
Hpy166II GTNNAC 1 cut(s) 280
Hpy188III TCNNGA 9 cut(s) 262, 451, 497, 499, 568, 744, 853, 985, 1117
Hpy8I GTNNAC 1 cut(s) 280
Hpy99I CGWCG 7 cut(s) 323, 374, 524, 569, 605, 1055, 1075
HpyAV CCTTC 9 cut(s) 166, 238, 268, 364, 403, 448, 503, 568, 1060
HpyCH4III ACNGT 1 cut(s) 1100
HpyCH4IV ACGT 2 cut(s) 503, 920
HpyCH4V TGCA 4 cut(s) 4, 760, 875, 1021
HpyF10VI GCNNNNNNNGC 8 cut(s) 359, 575, 584, 697, 762, 886, 1092, 1101
HpyF3I CTNAG 3 cut(s) 590, 794, 806
HpySE526I ACGT 2 cut(s) 503, 920
Hsp92I GRCGYC 1 cut(s) 1070
Hsp92II CATG 1 cut(s) 1112
HspAI GCGC 5 cut(s) 435, 678, 700, 887, 1048
Ksp22I TGATCA 1 cut(s) 1011
LguI GCTCTTC 1 cut(s) 159
LmnI GCTCC 5 cut(s) 184, 611, 622, 1006, 1109
Lsp1109I GCAGC 3 cut(s) 159, 349, 933
LweI GCATC 5 cut(s) 138, 263, 384, 862, 1095
MaeI CTAG 1 cut(s) 176
MaeII ACGT 2 cut(s) 503, 920
MboII GAAGA 7 cut(s) 176, 349, 529, 583, 652, 811, 1039
MhlI GDGCHC 3 cut(s) 589, 920, 956
MluCI AATT 5 cut(s) 77, 81, 101, 119, 132
MlyI GAGTC 2 cut(s) 509, 620
MmeI TCCRAC 4 cut(s) 342, 393, 543, 753
MroXI GAANNNNTTC 2 cut(s) 81, 992
MseI TTAA 4 cut(s) 80, 693, 707, 822
MslI CAYNNNNRTG 1 cut(s) 880
MspA1I CMGCKG 1 cut(s) 172
MspI CCGG 3 cut(s) 188, 221, 713
MspR9I CCNGG 4 cut(s) 188, 221, 290, 714
MvaI CCWGG 1 cut(s) 290
MvnI CGCG 9 cut(s) 435, 545, 569, 620, 680, 702, 773, 842, 1050
MwoI GCNNNNNNNGC 8 cut(s) 359, 575, 584, 697, 762, 886, 1092, 1101
NciI CCSGG 3 cut(s) 188, 221, 714
NheI GCTAGC 1 cut(s) 175
NlaIII CATG 1 cut(s) 1112
NlaIV GGNNCC 4 cut(s) 449, 587, 607, 1105
NmeAIII GCCGAG 3 cut(s) 274, 295, 451
NruI TCGCGA 1 cut(s) 569
NspV TTCGAA 1 cut(s) 130
OliI CACNNNNGTG 1 cut(s) 880
PaeR7I CTCGAG 1 cut(s) 497
PciSI GCTCTTC 1 cut(s) 159
PcsI WCGNNNNNNNCGW 2 cut(s) 366, 606
PdmI GAANNNNTTC 2 cut(s) 81, 992
PfeI GAWTC 1 cut(s) 627
Pfl23II CGTACG 1 cut(s) 832
PkrI GCNGC 4 cut(s) 171, 174, 364, 948
Ple19I CGATCG 2 cut(s) 549, 831
PleI GAGTC 2 cut(s) 509, 619
PpsI GAGTC 2 cut(s) 509, 619
Ppu21I YACGTR 1 cut(s) 921
PshBI ATTAAT 1 cut(s) 80
Psp6I CCWGG 1 cut(s) 288
PspFI CCCAGC 2 cut(s) 395, 949
PspGI CCWGG 1 cut(s) 288
PspLI CGTACG 1 cut(s) 832
PspN4I GGNNCC 4 cut(s) 449, 587, 607, 1105
PspOMI GGGCCC 1 cut(s) 585
PspPI GGNCC 7 cut(s) 63, 190, 264, 430, 577, 585, 586
PsrI GAACNNNNNNTAC 2 cut(s) 914, 946
PstI CTGCAG 1 cut(s) 1023
PvuI CGATCG 2 cut(s) 549, 831
RruI TCGCGA 1 cut(s) 569
RsaI GTAC 7 cut(s) 218, 239, 485, 506, 834, 923, 977
RsaNI GTAC 7 cut(s) 217, 238, 484, 505, 833, 922, 976
RseI CAYNNNNRTG 1 cut(s) 880
Rsr2I CGGWCCG 1 cut(s) 190
RsrII CGGWCCG 1 cut(s) 190
SalI GTCGAC 1 cut(s) 278
SapI GCTCTTC 1 cut(s) 159
SaqAI TTAA 4 cut(s) 80, 693, 707, 822
SatI GCNGC 4 cut(s) 170, 173, 363, 947
Sau96I GGNCC 7 cut(s) 63, 190, 264, 430, 577, 585, 586
SbfI CCTGCAGG 1 cut(s) 1023
SchI GAGTC 2 cut(s) 509, 620
ScrFI CCNGG 4 cut(s) 188, 221, 290, 714
SdaI CCTGCAGG 1 cut(s) 1023
SduI GDGCHC 3 cut(s) 589, 920, 956
SfaNI GCATC 5 cut(s) 138, 263, 384, 862, 1095
SfcI CTRYAG 1 cut(s) 1019
SfiI GGCCNNNNNGGCC 1 cut(s) 584
Sfr274I CTCGAG 1 cut(s) 497
SfuI TTCGAA 1 cut(s) 130
SinI GGWCC 3 cut(s) 63, 190, 264
SlaI CTCGAG 1 cut(s) 497
SmiMI CAYNNNNRTG 1 cut(s) 880
SmlI CTYRAG 1 cut(s) 497
SmoI CTYRAG 1 cut(s) 497
Sse8387I CCTGCAGG 1 cut(s) 1023
Sse9I AATT 5 cut(s) 77, 81, 101, 119, 132
SspMI CTAG 1 cut(s) 176
StyD4I CCNGG 4 cut(s) 186, 219, 288, 712
TaaI ACNGT 1 cut(s) 1100
TaiI ACGT 2 cut(s) 506, 923
TaqI TCGA 8 cut(s) 130, 279, 498, 549, 600, 827, 852, 996
TaqII GACCGA 1 cut(s) 51
TasI AATT 5 cut(s) 77, 81, 101, 119, 132
TatI WGTACW 3 cut(s) 237, 483, 975
TauI GCSGC 1 cut(s) 172
TfiI GAWTC 1 cut(s) 627
Tru1I TTAA 4 cut(s) 80, 693, 707, 822
Tru9I TTAA 4 cut(s) 80, 693, 707, 822
TscAI CASTG 5 cut(s) 308, 587, 767, 795, 882
TseI GCWGC 3 cut(s) 172, 362, 946
TspDTI ATGAA 5 cut(s) 20, 126, 422, 914, 1094
TspGWI ACGGA 3 cut(s) 115, 850, 872
TspRI CASTG 5 cut(s) 308, 587, 767, 795, 882
VpaK11BI GGWCC 3 cut(s) 63, 190, 264
VspI ATTAAT 1 cut(s) 80
XagI CCTNNNNNAGG 1 cut(s) 287
XapI RAATTY 3 cut(s) 101, 119, 132
XhoI CTCGAG 1 cut(s) 497
XmiI GTMKAC 1 cut(s) 279
XmnI GAANNNNTTC 2 cut(s) 81, 992
XspI CTAG 1 cut(s) 176
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.