FvH4_6g53920

Belongs to the GRAS family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0016909
Physical Location & Seq
Reverse (-)
39452050 .. 39454526
2477 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g53920.t1

Sequence Viewer

Length: 2133 bp
ATGATGATGAACTCTCACTGTGGGAGCATGGGTTCGATCAAGAGTGAGAACTCATGCACCGATTTCAAACCAACATCTCCCAACGAATCAACAATAATGTCCGAAGCGCCCAAGAAAGCTACGAGTACAACCACTACTGCTCTATCTTCTTCCGACATGATGGAACAGAGTACTACTAGCTTAACACCACCGAGCCTCAACTTTCCAGCTCTCAAGTTCGAGCTAGACGGCGACGTCGAAGTTGAATCACCGGACCATTCCATGTGGGAGTCGTTTTTTTCCGAACAATTTGATACGGATTTCATGGTCTTGTCCCCGGTGGCAAACATGAACAATAATCTCCCCAACTCTCCACGTTCTTTCTGTTACAATAATGGTCAGGTGATGCAGGGGCAGTCTAGCTTTTCGAGCTGCTCTCCTCCTCGCTTTGGTTCGTCTCCGGTCGGAGCATTTAGCAGAGACAACAGCAAAGGAAAGGGACTCAGTCCACTCCGGAGGGTTTTCAACTCTCCGGTGAACTACATACAGCAAGAGCCGGAGAATCTTCAGTCACTACCACCAGCCTCAATCGAAGACTTCTTGGATGACTATCAAAGAGACGGCTTCGTTGCAGCGTATGGTAACCCTAACCTTAACAACCAAACAACTACATGCACATCAAAGATGTCAGCAGGAGTAAACAATCCTTCCTCGCAATCTTATCACAATCCAATGACTTCAATGGACTGCAACATGTCATCAACCATGCAAACCCCTTCCAGGTTTTCGCGATCGGTGAGCGAAACATCGTTAGTTACGGAGTGTAACTCTCAGATGAGCCAAGAGTCGAGGGGTGGCGGAGCATATCATCATCAGATGGGATCCAACTGTGGTGCACCGTTATCACAACAGTTGATGCACGAACGCCAGCAAGAGAAGCAACACATGCAGATGCACCCACAAAAGCAACACCACAATAACCACAATTACAATATGATGCCGCCTTCTCTTCCTCCTGTTGCCCCTGAGCCGGAACAAGACAGTGGTCTCCAACTGGTTCATCTTCTTCTTGCTTGTGCCGAAGCTGTTGCAAAAGAAGATTACATGTTAGCAAGACGGTATCTCCACCACCTCAATCAAGTGGTGTCGGCTCTGGGCGACTCCATGCAGCGTGTTGCTGCCTGCTTCACAGAAGCCCTAAGCGCACGCCTTGCCGCAACTCTAACCACCAATTCAAGTGCTTTGGCGCCCAAGCCCTTCTCTCCTTTCCCTCCTAATTCCCTAGAAATCCTCAAGATATACCAAATCGTCTACCAAGCCTGCCCCTACATCAAGTTCGCTCACTTCACCGCTAACCAGGCCATTTTCGAGGCGTTTGAGTCCGAAGAACGAGTTCATGTCATTGACCTCGACATCCTTCAAGGTTATCAATGGCCAGCTTTCATGCAAGCCCTAGCAGCTCGATCGGGAGGTGCTCCATTTCTCCGTATAACCGGAGTCGGTCCATGCATAGAGGCGGTGAAAGAAACGGGCCGGTGCTTGATGGAATTAGCCATCTCTCTTCACGTCCCGTTTGAATTTCATGCGGTTGGAGAACAACTAGAAGACCTCAAACCACACATGTTCAACCGAAGAATAGGAGAAGCCCTAGCAGTGAACACCGTCAACCGTCTCCACCGTGTCCCGGGGAACTGTCTCGGCAACTTACTAGCCATGATCCGTGACCAAGCACCCAACATTGTGACCCTAGTGGAACAAGAGGCCAGCCACAACGGACCCTACTTTTTGGGGAGGTTTCTCGAAGCCTTGCACTATTACTCGGCGATTTTCGACTCGTTGGACGCCACGTTCCCACCGGACTCGGCTCAAAGGGCCAAGGTGGAGCAGTACATATTTGCGCCGGAGATACGGAACATTGTGGCGTTTGAAGGAGCGGAGAGGACAGAGAGGCACGAGAGGCTTGAGAAGTGGAGGAAAGTCATGGAAGGGAAGGGTTTCAAAAGCGTGCCACTGAGTGCCAACGCCGTGACGCAGTCGAAGATCTTGCTAGGTTTGTACTCGTGCGACGGCTATAGGATGATGGAGGACAAGGGTTGCTTGCTCTTGGGGTGGCAAGACCGGTCTATCATGGCGGCGTCTGCATGGAGATGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GRAS

Protein Analysis

711

Amino Acids

78.81

Weight (kDa)

5.81

Isoelectric Point (pI)

62.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GRAS PF03514 345 - 709 1.1e-131 GRAS domain family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016909)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g53920
malus_domestica MD09G1007200.v1.1 MD17G1011100.v1.1
prunus_persica Prupe.3G309800_v2.0.a1
pyrus_communis pycom111g00540
rosa_chinensis RchiOBHm_Chr2g0176081
rosa_laevigata RLG00000022379
rosa_multiflora Rmu_sc0009879.1_g000008
rosa_rugosa Rorug02G0590300
rosa_samantha Rh2AG669100 Rh2BG680700 Rh2CG643600 Rh2DG694400
rosa_wichuraiana Rw2G054880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 233
AatII GACGTC 1 cut(s) 237
AccB1I GGYRCC 1 cut(s) 1225
AccBSI CCGCTC 1 cut(s) 1913
AccI GTMKAC 1 cut(s) 1290
AccII CGCG 1 cut(s) 769
AccIII TCCGGA 1 cut(s) 492
AciI CCGC 8 cut(s) 837, 980, 1194, 1329, 1496, 1565, 1913, 2111
AclWI GGATC 3 cut(s) 855, 868, 1690
AcoI YGGCCR 1 cut(s) 1412
AcsI RAATTY 1 cut(s) 1556
AcuI CTGAAG 1 cut(s) 530
AcyI GRCGYC 4 cut(s) 234, 1226, 1821, 2114
AdeI CACNNNGTG 1 cut(s) 1994
AfaI GTAC 4 cut(s) 127, 172, 1868, 2036
AfiI CCNNNNNNNGG 4 cut(s) 428, 759, 1009, 1663
AflIII ACRYGT 3 cut(s) 732, 1083, 1599
AgeI ACCGGT 1 cut(s) 2097
AjiI CACGTC 1 cut(s) 1546
AjnI CCWGG 2 cut(s) 758, 1335
AloI GAACNNNNNNTCC 4 cut(s) 16, 48, 1811, 1843
AluBI AGCT 9 cut(s) 119, 180, 209, 223, 402, 411, 1064, 1418, 1439
AluI AGCT 9 cut(s) 119, 180, 209, 223, 402, 411, 1064, 1418, 1439
Alw21I GWGCWC 2 cut(s) 877, 1456
Alw26I GTCTC 6 cut(s) 441, 453, 591, 1031, 1655, 1679
Alw44I GTGCAC 1 cut(s) 873
AlwI GGATC 3 cut(s) 855, 868, 1690
Ama87I CYCGRG 1 cut(s) 1663
Aor13HI TCCGGA 1 cut(s) 492
AoxI GGCC 5 cut(s) 1338, 1412, 1510, 1740, 1851
ApaLI GTGCAC 1 cut(s) 873
ApeKI GCWGC 5 cut(s) 411, 611, 1147, 1157, 1436
ApoI RAATTY 1 cut(s) 1556
AsiGI ACCGGT 1 cut(s) 2097
Asp700I GAANNNNTTC 2 cut(s) 1371, 1973
AspLEI GCGC 4 cut(s) 109, 1184, 1228, 1879
AspS9I GGNCC 5 cut(s) 253, 1481, 1510, 1754, 1851
AsuC2I CCSGG 3 cut(s) 317, 1664, 1665
AsuHPI GGTGA 6 cut(s) 240, 394, 526, 787, 1318, 1510
AvaI CYCGRG 1 cut(s) 1663
AvaII GGWCC 3 cut(s) 253, 1481, 1754
BaeGI GKGCMC 1 cut(s) 877
BalI TGGCCA 1 cut(s) 1414
BamHI GGATCC 1 cut(s) 860
BanI GGYRCC 1 cut(s) 1225
BauI CACGAG 2 cut(s) 1931, 2038
BbsI GAAGAC 2 cut(s) 579, 1590
Bbv12I GWGCWC 2 cut(s) 877, 1456
BbvI GCAGC 5 cut(s) 398, 623, 1144, 1159, 1448
BccI CCATC 5 cut(s) 154, 850, 1516, 1541, 2053
BceAI ACGGC 4 cut(s) 244, 616, 1988, 2062
BcgI CGANNNNNNTGC 6 cut(s) 1049, 1083, 1425, 1459, 2005, 2039
BciT130I CCWGG 2 cut(s) 760, 1337
BcnI CCSGG 3 cut(s) 317, 1664, 1665
BcoDI GTCTC 6 cut(s) 441, 453, 591, 1031, 1655, 1679
BfmI CTRYAG 1 cut(s) 2050
BfoI RGCGCY 2 cut(s) 110, 1229
BglII AGATCT 1 cut(s) 2019
BisI GCNGC 8 cut(s) 412, 612, 980, 1148, 1158, 1194, 1437, 2112
BlsI GCNGC 8 cut(s) 413, 613, 981, 1149, 1159, 1195, 1438, 2113
BmcAI AGTACT 1 cut(s) 172
Bme1390I CCNGG 5 cut(s) 317, 760, 1337, 1664, 1665
Bme18I GGWCC 3 cut(s) 253, 1481, 1754
BmeT110I CYCGRG 1 cut(s) 1663
BmgBI CACGTC 1 cut(s) 1546
BmgT120I GGNCC 5 cut(s) 253, 1481, 1510, 1754, 1851
BmiI GGNNCC 3 cut(s) 862, 1227, 1756
BmrFI CCNGG 5 cut(s) 317, 760, 1337, 1664, 1665
BmsI GCATC 5 cut(s) 375, 885, 921, 966, 2117
BoxI GACNNNNGTC 1 cut(s) 1023
BpiI GAAGAC 2 cut(s) 579, 1590
BplI GAGNNNNNCTC 4 cut(s) 400, 432, 791, 823
Bpu10I CCTNAGC 2 cut(s) 1005, 1178
BpuEI CTTGAG 3 cut(s) 197, 1256, 1961
BpuMI CCSGG 3 cut(s) 317, 1664, 1665
BsaBI GATNNNNATC 1 cut(s) 588
BsaHI GRCGYC 4 cut(s) 234, 1226, 1821, 2114
BsaI GGTCTC 1 cut(s) 1031
BsaJI CCNNGG 4 cut(s) 315, 1663, 1664, 1854
BsaWI WCCGGW 7 cut(s) 250, 439, 492, 511, 1472, 1834, 2097
BsaXI ACNNNNNCTCC 4 cut(s) 16, 46, 1086, 1116
Bsc4I CCNNNNNNNGG 4 cut(s) 428, 759, 1009, 1663
Bse118I RCCGGY 2 cut(s) 1512, 2097
Bse1I ACTGG 1 cut(s) 1038
Bse8I GATNNNNATC 1 cut(s) 588
BseAI TCCGGA 1 cut(s) 492
BseBI CCWGG 2 cut(s) 760, 1337
BseDI CCNNGG 4 cut(s) 315, 1663, 1664, 1854
BseGI GGATG 3 cut(s) 589, 1392, 2061
BseJI GATNNNNATC 1 cut(s) 588
BseLI CCNNNNNNNGG 4 cut(s) 428, 759, 1009, 1663
BseMII CTCAG 4 cut(s) 496, 824, 996, 1982
BseNI ACTGG 1 cut(s) 1038
BseRI GAGGAG 2 cut(s) 408, 411
BseSI GKGCMC 1 cut(s) 877
BseXI GCAGC 5 cut(s) 398, 623, 1144, 1159, 1448
Bsh1236I CGCG 1 cut(s) 769
Bsh1285I CGRYCG 3 cut(s) 444, 773, 1445
BshFI GGCC 5 cut(s) 1340, 1414, 1512, 1742, 1853
BshNI GGYRCC 1 cut(s) 1225
BshTI ACCGGT 1 cut(s) 2097
BsiEI CGRYCG 3 cut(s) 444, 773, 1445
BsiHKAI GWGCWC 2 cut(s) 877, 1456
BsiHKCI CYCGRG 1 cut(s) 1663
BslFI GGGAC 4 cut(s) 298, 492, 1532, 1646
BslI CCNNNNNNNGG 4 cut(s) 428, 759, 1009, 1663
BsmAI GTCTC 6 cut(s) 441, 453, 591, 1031, 1655, 1679
BsmBI CGTCTC 3 cut(s) 441, 591, 1655
BsmFI GGGAC 4 cut(s) 298, 492, 1532, 1646
BsnI GGCC 5 cut(s) 1340, 1414, 1512, 1742, 1853
Bso31I GGTCTC 1 cut(s) 1031
BsoBI CYCGRG 1 cut(s) 1663
Bsp1286I GDGCHC 2 cut(s) 877, 1456
Bsp13I TCCGGA 1 cut(s) 492
Bsp143I GATC 6 cut(s) 36, 770, 860, 1442, 1695, 2019
Bsp68I TCGCGA 1 cut(s) 769
BspACI CCGC 8 cut(s) 837, 980, 1194, 1329, 1496, 1565, 1913, 2111
BspANI GGCC 5 cut(s) 1340, 1414, 1512, 1742, 1853
BspCNI CTCAG 4 cut(s) 495, 823, 997, 1983
BspEI TCCGGA 1 cut(s) 492
BspFNI CGCG 1 cut(s) 769
BspLI GGNNCC 3 cut(s) 862, 1227, 1756
BspPI GGATC 3 cut(s) 855, 868, 1690
BspT107I GGYRCC 1 cut(s) 1225
BspTNI GGTCTC 1 cut(s) 1031
BsrBI CCGCTC 1 cut(s) 1913
BsrFI RCCGGY 2 cut(s) 1512, 2097
BsrI ACTGG 1 cut(s) 1038
BssAI RCCGGY 2 cut(s) 1512, 2097
BssECI CCNNGG 4 cut(s) 315, 1663, 1664, 1854
BssMI GATC 6 cut(s) 36, 770, 860, 1442, 1695, 2019
BssNI GRCGYC 4 cut(s) 234, 1226, 1821, 2114
BssSI CACGAG 2 cut(s) 1931, 2038
BssT1I CCWWGG 1 cut(s) 1854
Bst2BI CACGAG 2 cut(s) 1931, 2038
Bst2UI CCWGG 2 cut(s) 760, 1337
Bst6I CTCTTC 2 cut(s) 993, 1545
BstACI GRCGYC 4 cut(s) 234, 1226, 1821, 2114
BstAPI GCANNNNNTGC 2 cut(s) 925, 1190
BstC8I GCNNGC 9 cut(s) 908, 1162, 1186, 1300, 1416, 1428, 1744, 1985, 2078
BstDEI CTNAG 5 cut(s) 482, 810, 1005, 1178, 1991
BstEII GGTNACC 1 cut(s) 620
BstF5I GGATG 3 cut(s) 589, 1392, 2061
BstFNI CGCG 1 cut(s) 769
BstH2I RGCGCY 2 cut(s) 110, 1229
BstHHI GCGC 4 cut(s) 109, 1184, 1228, 1879
BstKTI GATC 6 cut(s) 39, 773, 863, 1445, 1698, 2022
BstMAI GTCTC 6 cut(s) 441, 453, 591, 1031, 1655, 1679
BstMBI GATC 6 cut(s) 36, 770, 860, 1442, 1695, 2019
BstMCI CGRYCG 3 cut(s) 444, 773, 1445
BstNI CCWGG 2 cut(s) 760, 1337
BstNSI RCATGY 5 cut(s) 654, 736, 928, 1087, 1603
BstPAI GACNNNNGTC 1 cut(s) 1023
BstPI GGTNACC 1 cut(s) 620
BstSCI CCNGG 5 cut(s) 315, 758, 1335, 1662, 1663
BstSFI CTRYAG 1 cut(s) 2050
BstSLI GKGCMC 1 cut(s) 877
BstUI CGCG 1 cut(s) 769
BstV1I GCAGC 5 cut(s) 398, 623, 1144, 1159, 1448
BstV2I GAAGAC 2 cut(s) 579, 1590
BstX2I RGATCY 2 cut(s) 860, 2019
BstYI RGATCY 2 cut(s) 860, 2019
BsuRI GGCC 5 cut(s) 1340, 1414, 1512, 1742, 1853
BtrI CACGTC 1 cut(s) 1546
BtsCI GGATG 3 cut(s) 589, 1392, 2061
BtsI GCAGTG 1 cut(s) 1638
BtsIMutI CAGTG 4 cut(s) 16, 1027, 1638, 1988
BtuMI TCGCGA 1 cut(s) 769
Cac8I GCNNGC 9 cut(s) 908, 1162, 1186, 1300, 1416, 1428, 1744, 1985, 2078
CfoI GCGC 4 cut(s) 109, 1184, 1228, 1879
Cfr10I RCCGGY 2 cut(s) 1512, 2097
Cfr13I GGNCC 5 cut(s) 253, 1481, 1510, 1754, 1851
Cfr9I CCCGGG 1 cut(s) 1663
CseI GACGC 3 cut(s) 1829, 2017, 2103
Csp6I GTAC 4 cut(s) 126, 171, 1867, 2035
CspAI ACCGGT 1 cut(s) 2097
CviQI GTAC 4 cut(s) 126, 171, 1867, 2035
DdeI CTNAG 5 cut(s) 482, 810, 1005, 1178, 1991
DinI GGCGCC 1 cut(s) 1227
DpnI GATC 6 cut(s) 38, 772, 862, 1444, 1697, 2021
DpnII GATC 6 cut(s) 36, 770, 860, 1442, 1695, 2019
DraIII CACNNNGTG 1 cut(s) 1994
DrdI GACNNNNNNGTC 1 cut(s) 233
DseDI GACNNNNNNGTC 1 cut(s) 233
EaeI YGGCCR 1 cut(s) 1412
Eam1104I CTCTTC 2 cut(s) 993, 1545
EarI CTCTTC 2 cut(s) 993, 1545
EciI GGCGGA 1 cut(s) 852
Eco130I CCWWGG 1 cut(s) 1854
Eco31I GGTCTC 1 cut(s) 1031
Eco47I GGWCC 3 cut(s) 253, 1481, 1754
Eco57I CTGAAG 1 cut(s) 530
Eco88I CYCGRG 1 cut(s) 1663
Eco91I GGTNACC 1 cut(s) 620
EcoO65I GGTNACC 1 cut(s) 620
EcoRII CCWGG 2 cut(s) 758, 1335
EcoT14I CCWWGG 1 cut(s) 1854
EcoT22I ATGCAT 1 cut(s) 1490
EgeI GGCGCC 1 cut(s) 1227
EheI GGCGCC 1 cut(s) 1227
ErhI CCWWGG 1 cut(s) 1854
Esp3I CGTCTC 3 cut(s) 441, 591, 1655
FalI AAGNNNNNCTT 2 cut(s) 2060, 2092
FaqI GGGAC 4 cut(s) 298, 492, 1532, 1646
FblI GTMKAC 1 cut(s) 1290
Fnu4HI GCNGC 8 cut(s) 412, 612, 980, 1148, 1158, 1194, 1437, 2112
FokI GGATG 3 cut(s) 596, 1379, 2068
Fsp4HI GCNGC 8 cut(s) 412, 612, 980, 1148, 1158, 1194, 1437, 2112
GlaI GCGC 4 cut(s) 108, 1183, 1227, 1878
GluI GCNGC 8 cut(s) 412, 612, 980, 1148, 1158, 1194, 1437, 2112
HaeII RGCGCY 2 cut(s) 110, 1229
HaeIII GGCC 5 cut(s) 1340, 1414, 1512, 1742, 1853
HgaI GACGC 3 cut(s) 1829, 2017, 2103
HhaI GCGC 4 cut(s) 109, 1184, 1228, 1879
Hin1I GRCGYC 4 cut(s) 234, 1226, 1821, 2114
Hin6I GCGC 4 cut(s) 107, 1182, 1226, 1877
HinP1I GCGC 4 cut(s) 107, 1182, 1226, 1877
HincII GTYRAC 1 cut(s) 1645
HindII GTYRAC 1 cut(s) 1645
HphI GGTGA 6 cut(s) 240, 394, 526, 787, 1318, 1510
Hpy166II GTNNAC 7 cut(s) 488, 517, 679, 875, 1291, 1636, 1645
Hpy188I TCNGA 7 cut(s) 103, 154, 283, 446, 813, 855, 1363
Hpy188III TCNNGA 6 cut(s) 40, 493, 768, 1273, 1446, 1778
Hpy8I GTNNAC 7 cut(s) 488, 517, 679, 875, 1291, 1636, 1645
Hpy99I CGWCG 3 cut(s) 236, 239, 2048
HpyAV CCTTC 8 cut(s) 696, 765, 993, 1246, 1406, 1901, 1958, 1963
HpyCH4IV ACGT 4 cut(s) 234, 355, 1545, 1826
HpyF3I CTNAG 5 cut(s) 482, 810, 1005, 1178, 1991
HpySE526I ACGT 4 cut(s) 234, 355, 1545, 1826
Hsp92I GRCGYC 4 cut(s) 234, 1226, 1821, 2114
HspAI GCGC 4 cut(s) 107, 1182, 1226, 1877
KasI GGCGCC 1 cut(s) 1225
Kpn2I TCCGGA 1 cut(s) 492
Kzo9I GATC 6 cut(s) 36, 770, 860, 1442, 1695, 2019
LmnI GCTCC 6 cut(s) 24, 446, 839, 1459, 1861, 1910
Lsp1109I GCAGC 5 cut(s) 398, 623, 1144, 1159, 1448
LweI GCATC 5 cut(s) 375, 885, 921, 966, 2117
MaeII ACGT 4 cut(s) 234, 355, 1545, 1826
MaeIII GTNAC 8 cut(s) 365, 549, 620, 793, 803, 1700, 1720, 2005
MalI GATC 6 cut(s) 38, 772, 862, 1444, 1697, 2021
MbiI CCGCTC 1 cut(s) 1913
MboI GATC 6 cut(s) 36, 770, 860, 1442, 1695, 2019
MflI RGATCY 2 cut(s) 860, 2019
MhlI GDGCHC 2 cut(s) 877, 1456
MlsI TGGCCA 1 cut(s) 1414
MluCI AATT 6 cut(s) 287, 964, 1210, 1255, 1526, 1556
MluNI TGGCCA 1 cut(s) 1414
Mly113I GGCGCC 1 cut(s) 1226
MlyI GAGTC 8 cut(s) 278, 474, 833, 1133, 1367, 1485, 1805, 1832
MmeI TCCRAC 6 cut(s) 177, 424, 888, 1054, 1549, 1797
Mox20I TGGCCA 1 cut(s) 1414
Mph1103I ATGCAT 1 cut(s) 1490
MroI TCCGGA 1 cut(s) 492
MroXI GAANNNNTTC 2 cut(s) 1371, 1973
MscI TGGCCA 1 cut(s) 1414
MseI TTAA 2 cut(s) 182, 633
MslI CAYNNNNRTG 2 cut(s) 929, 2125
Msp20I TGGCCA 1 cut(s) 1414
MspR9I CCNGG 5 cut(s) 317, 760, 1337, 1664, 1665
MvaI CCWGG 2 cut(s) 760, 1337
MvnI CGCG 1 cut(s) 769
NarI GGCGCC 1 cut(s) 1226
NciI CCSGG 3 cut(s) 317, 1664, 1665
NdeII GATC 6 cut(s) 36, 770, 860, 1442, 1695, 2019
NlaIV GGNNCC 3 cut(s) 862, 1227, 1756
NmeAIII GCCGAG 3 cut(s) 1656, 1778, 1820
NmuCI GTSAC 4 cut(s) 549, 1700, 1720, 2005
NruI TCGCGA 1 cut(s) 769
NsiI ATGCAT 1 cut(s) 1490
NspI RCATGY 5 cut(s) 654, 736, 928, 1087, 1603
PciI ACATGT 3 cut(s) 732, 1083, 1599
PcsI WCGNNNNNNNCGW 1 cut(s) 234
PdmI GAANNNNTTC 2 cut(s) 1371, 1973
PfeI GAWTC 3 cut(s) 86, 245, 541
PflFI GACNNNGTC 2 cut(s) 483, 2011
PinAI ACCGGT 1 cut(s) 2097
PkrI GCNGC 8 cut(s) 413, 613, 981, 1149, 1159, 1195, 1438, 2113
Ple19I CGATCG 2 cut(s) 773, 1445
PleI GAGTC 8 cut(s) 277, 474, 832, 1133, 1366, 1484, 1805, 1832
PluTI GGCGCC 1 cut(s) 1229
PpsI GAGTC 8 cut(s) 277, 474, 832, 1133, 1366, 1484, 1805, 1832
PscI ACATGT 3 cut(s) 732, 1083, 1599
PshAI GACNNNNGTC 1 cut(s) 1023
Psp6I CCWGG 2 cut(s) 758, 1335
PspEI GGTNACC 1 cut(s) 620
PspGI CCWGG 2 cut(s) 758, 1335
PspN4I GGNNCC 3 cut(s) 862, 1227, 1756
PspPI GGNCC 5 cut(s) 253, 1481, 1510, 1754, 1851
PsuI RGATCY 2 cut(s) 860, 2019
PsyI GACNNNGTC 2 cut(s) 483, 2011
PvuI CGATCG 2 cut(s) 773, 1445
RruI TCGCGA 1 cut(s) 769
RsaI GTAC 4 cut(s) 127, 172, 1868, 2036
RsaNI GTAC 4 cut(s) 126, 171, 1867, 2035
RseI CAYNNNNRTG 2 cut(s) 929, 2125
SaqAI TTAA 2 cut(s) 182, 633
SatI GCNGC 8 cut(s) 412, 612, 980, 1148, 1158, 1194, 1437, 2112
Sau3AI GATC 6 cut(s) 36, 770, 860, 1442, 1695, 2019
Sau96I GGNCC 5 cut(s) 253, 1481, 1510, 1754, 1851
ScaI AGTACT 1 cut(s) 172
SchI GAGTC 8 cut(s) 278, 474, 833, 1133, 1367, 1485, 1805, 1832
ScrFI CCNGG 5 cut(s) 317, 760, 1337, 1664, 1665
SduI GDGCHC 2 cut(s) 877, 1456
SfaNI GCATC 5 cut(s) 375, 885, 921, 966, 2117
SfcI CTRYAG 1 cut(s) 2050
SfoI GGCGCC 1 cut(s) 1227
SinI GGWCC 3 cut(s) 253, 1481, 1754
SmaI CCCGGG 1 cut(s) 1665
SmiMI CAYNNNNRTG 2 cut(s) 929, 2125
SmlI CTYRAG 3 cut(s) 212, 1271, 1940
SmoI CTYRAG 3 cut(s) 212, 1271, 1940
Sse9I AATT 6 cut(s) 287, 964, 1210, 1255, 1526, 1556
SsiI CCGC 8 cut(s) 837, 980, 1194, 1329, 1496, 1565, 1913, 2111
SspDI GGCGCC 1 cut(s) 1225
StyD4I CCNGG 5 cut(s) 315, 758, 1335, 1662, 1663
StyI CCWWGG 1 cut(s) 1854
TaiI ACGT 4 cut(s) 237, 358, 1548, 1829
TaqII GACCGA 1 cut(s) 1469
TasI AATT 6 cut(s) 287, 964, 1210, 1255, 1526, 1556
TatI WGTACW 4 cut(s) 125, 170, 1866, 2034
TauI GCSGC 3 cut(s) 982, 1196, 2114
TfiI GAWTC 3 cut(s) 86, 245, 541
Tru1I TTAA 2 cut(s) 182, 633
Tru9I TTAA 2 cut(s) 182, 633
TscAI CASTG 4 cut(s) 23, 1027, 1638, 1995
TseFI GTSAC 4 cut(s) 549, 1700, 1720, 2005
TseI GCWGC 5 cut(s) 411, 611, 1147, 1157, 1436
Tsp45I GTSAC 4 cut(s) 549, 1700, 1720, 2005
TspDTI ATGAA 7 cut(s) 23, 292, 344, 1028, 1364, 1411, 1550
TspGWI ACGGA 6 cut(s) 311, 812, 1454, 1688, 1767, 1903
TspMI CCCGGG 1 cut(s) 1663
TspRI CASTG 4 cut(s) 23, 1027, 1638, 1995
Tth111I GACNNNGTC 2 cut(s) 483, 2011
VneI GTGCAC 1 cut(s) 873
VpaK11BI GGWCC 3 cut(s) 253, 1481, 1754
XapI RAATTY 1 cut(s) 1556
XceI RCATGY 5 cut(s) 654, 736, 928, 1087, 1603
XmaI CCCGGG 1 cut(s) 1663
XmiI GTMKAC 1 cut(s) 1290
XmnI GAANNNNTTC 2 cut(s) 1371, 1973
ZraI GACGTC 1 cut(s) 235
ZrmI AGTACT 1 cut(s) 172
Zsp2I ATGCAT 1 cut(s) 1490
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.