MD09G1007200.v1.1

Belongs to the GRAS family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
OG0016909
Physical Location & Seq
Forward (+)
510029 .. 513274
3246 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1007200.v1.1.491

Sequence Viewer

Length: 2115 bp
ATGATCAATACTCATTGTGGAAGCATGGGGTCTATCAAGAGTGAGAACTCATGCAGCTCCGACCTCAGACCCCCGTCTCCGACTGAATCCACGACGATGTCTATGTCCATATCAGAATCTAAGAAAATCACAATTCCTCCATCCTCAGAGTTGGATCAGCAGAGCACCCTAACTCCGCCGAGCCTCAACTTTCCAACGCTCAAGTTCGAGCTAGACGATGTTGAAGTCCAATCTCCCGACCATTCCATCTGGGAGTCTTTGTTCTCCGAGCAATTCGAAACCGATTTTATGATCTTGTCGCCCGTCCCAAACAACATGCCGAACTCTCCCCAAAACGGTGGTTCTGCAACTCATCAGAATTACAATTACAATTACGCTCAGTCCATGCAAGGGCAGAGCCTCTCGGGCTGCCCTTCCCCTAGGTTTTCGCCGCACCTCGGAGCATTCAGCAGCACCCATAACCCTAAAGGCAAAGGACTCAGCCCGCTCCGTAGGGTTTTCAACTCTCCTGTTAACCAGTACATGGAGCCGGCTGATCAGAACACGCAGTCACTCCCTGTTCCTGTTTCCATCGAAGACTTCTTGGACGATTATGAACGTGACGGATTCATATCCGCATTCCCAACAACAGCATCGTCCAAGATATCAGGAAGCTCGTCACAGTCTTACAATCATCACGATCACTTGCCAGCATCATCGACAGTTCCATCCGCCACGTTGGACTGCATGCCGATGAATAACTCTTCGAGGTTTAGTAGATCGGCGAGTGAAGCGTCGTTGGTTACGGCTGGTAATTCTCAGCTGACACAAGAGAGAAGCAGCGGTAGCGGTTATCAGCAGATGAGCGGCGCGCCACTTTCACAACAATTGCAACAAGAACGCATGCAAGAGAAGCAGCAACAGCCGCAAAAACAACACCACCACCAACCCCAACAACAACAGAACCTTCATTATAATATGATGGCGCCTGCTATCCCTATGGCACATGAGCAGGAACAAGATAGCGGGCTCCAATTGCTTCACCTCCTTCTTGTTTGCGCCGAGGCGGTTGCAAAAGAAGACTACATGTTAGCAAGAAGGTACCTCCACCACCTGAACCGAGTGGTGACGCCACTAGGCGATTCCATGCAGCGTGTTGCTTCATGCTTCACAGATGCCCTAAGCGCACGCCTGGCCGCCACTCTAACCACAAACCCTAGGGCTTCCGCCCCACAACCCTTCTCTCCGTTCCCTCCAAACTCGCTGGAAATCCTCAAAATCTACCAAATCGTCTACCAAGCCTGCCCCTACATCAAATTCGCACACTTCACCGCCAACCAAGCCATCTTCGAGGCGTTTGAGTCTGAAGAACGTGTACACGTCATCGACCTAGATATTCTTCAAGGGTATCAGTGGCCGGCTTTCATGCAGGCCTTAGCTGCCCGCCCCAGCGGGGCTCCCTTTCTCCGCATAACAGGGGTGGGCCCCTGCATAGAGGCAGTGAAAGAGACTGGCCGGTGTTTGACAGAACTAGCCCTATCTCTTCACGTCCCGTTTGAGTTCCATGCAGTTGGGGAGCAACTTGAAGATCTCAAGCCACACATGTTCAACCGGAGGATTGGCGAAGCGCTGGCTGTAAACACGGTGAACCGACTCCACCGAGTTCCGGTCAATTGCCTCGGGAACTTGCTAGCCATGATCCGTGACCAAGCACCCAACATTGTGACATTGGTGGAACAAGAAGCGAGTCATAACGGGCCCTACTTTTTGGGCAGGTTTCTCGAGGCTTTACATTACTACTCGGCGATTTTCGACTCGTTAGATGCGACCTTTCCGCCGGACTCGGCGCAGAGGGCGAAGGTGGAGCAGTACATATTTGCGCCGGAGATCCGGAACATCGTAGCGTGTGAAGGGGCGGAGCGGACGGAGAGGCACGAGAGGTTGGAGAAGTGGAGGAAGGTGATGGAGAGTAAAGGGTTTAAGAGCGTGGCGCTGAGTGCGAACGCGGTGACTCAGTCGAAGATATTGCTAGGGTTGTATTCTTGCGACGGGTATAGGATGACGGAGGACAACGGTTGCTTGCTCTTGGGGTGGCAAGACAGGTCTATTATGGCTGCTTCTGCATGGAGATGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GRAS

Protein Analysis

705

Amino Acids

78.25

Weight (kDa)

5.82

Isoelectric Point (pI)

65.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GRAS PF03514 340 - 703 7.8e-131 GRAS domain family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016909)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g53920
malus_domestica MD09G1007200.v1.1 MD17G1011100.v1.1
prunus_persica Prupe.3G309800_v2.0.a1
pyrus_communis pycom111g00540
rosa_chinensis RchiOBHm_Chr2g0176081
rosa_laevigata RLG00000022379
rosa_multiflora Rmu_sc0009879.1_g000008
rosa_rugosa Rorug02G0590300
rosa_samantha Rh2AG669100 Rh2BG680700 Rh2CG643600 Rh2DG694400
rosa_wichuraiana Rw2G054880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 954
Acc36I ACCTGC 1 cut(s) 1743
Acc65I GGTACC 1 cut(s) 1080
AccB1I GGYRCC 2 cut(s) 964, 1080
AccB7I CCANNNNNTGG 1 cut(s) 523
AccBSI CCGCTC 3 cut(s) 487, 846, 1900
AccI GTMKAC 1 cut(s) 1272
AccII CGCG 2 cut(s) 851, 1985
AccIII TCCGGA 1 cut(s) 1869
AclWI GGATC 3 cut(s) 162, 1672, 1861
AcoI YGGCCR 3 cut(s) 1173, 1394, 1492
AcsI RAATTY 1 cut(s) 1295
AcuI CTGAAG 1 cut(s) 1365
AcyI GRCGYC 2 cut(s) 965, 1109
AfaI GTAC 4 cut(s) 521, 1082, 1356, 1850
AfeI AGCGCT 1 cut(s) 1608
AfiI CCNNNNNNNGG 6 cut(s) 335, 390, 437, 523, 1432, 1645
AflIII ACRYGT 4 cut(s) 1065, 1351, 1357, 1581
AgsI TTSAA 5 cut(s) 224, 502, 1382, 1565, 1588
AjiI CACGTC 2 cut(s) 1360, 1528
AjnI CCWGG 1 cut(s) 1170
AloI GAACNNNNNNTCC 2 cut(s) 245, 277
AluBI AGCT 5 cut(s) 57, 211, 654, 802, 1418
AluI AGCT 5 cut(s) 57, 211, 654, 802, 1418
Alw21I GWGCWC 1 cut(s) 167
Alw26I GTCTC 2 cut(s) 81, 1481
AlwI GGATC 3 cut(s) 162, 1672, 1861
Ama87I CYCGRG 3 cut(s) 403, 1658, 1760
Aor13HI TCCGGA 1 cut(s) 1869
Aor51HI AGCGCT 1 cut(s) 1608
AoxI GGCC 6 cut(s) 1173, 1394, 1410, 1462, 1492, 1736
ApaI GGGCCC 2 cut(s) 1466, 1740
ApeKI GCWGC 8 cut(s) 54, 408, 450, 819, 895, 1129, 1418, 2093
ApoI RAATTY 1 cut(s) 1295
AscI GGCGCGCC 1 cut(s) 849
Asp718I GGTACC 1 cut(s) 1080
AspA2I CCTAGG 2 cut(s) 419, 1196
AspLEI GCGC 9 cut(s) 851, 853, 967, 1040, 1166, 1609, 1828, 1861, 1972
AspS9I GGNCC 4 cut(s) 1462, 1463, 1736, 1737
AsuHPI GGTGA 6 cut(s) 1013, 1117, 1300, 1636, 1951, 1999
AsuII TTCGAA 1 cut(s) 276
AsuNHI GCTAGC 1 cut(s) 1669
AvaI CYCGRG 3 cut(s) 403, 1658, 1760
AvrII CCTAGG 2 cut(s) 419, 1196
BaeGI GKGCMC 2 cut(s) 1466, 1740
BanI GGYRCC 2 cut(s) 964, 1080
BanII GRGCYC 4 cut(s) 1011, 1438, 1466, 1740
BarI GAAGNNNNNNTAC 2 cut(s) 1338, 1370
BauI CACGAG 1 cut(s) 1913
BbsI GAAGAC 2 cut(s) 582, 1065
Bbv12I GWGCWC 1 cut(s) 167
BbvI GCAGC 8 cut(s) 66, 395, 462, 831, 907, 1141, 1405, 2080
BccI CCATC 7 cut(s) 148, 254, 578, 715, 955, 1331, 1936
BceAI ACGGC 1 cut(s) 801
BcgI CGANNNNNNTGC 6 cut(s) 1031, 1065, 1741, 1775, 1987, 2021
BciT130I CCWGG 1 cut(s) 1172
BclI TGATCA 2 cut(s) 3, 535
BcoDI GTCTC 2 cut(s) 81, 1481
BfaI CTAG 8 cut(s) 212, 420, 1115, 1197, 1370, 1511, 1670, 2009
BfoI RGCGCY 3 cut(s) 968, 1610, 1973
BfuAI ACCTGC 1 cut(s) 1743
BglI GCCNNNNNGGC 1 cut(s) 405
BglII AGATCT 1 cut(s) 1567
BlnI CCTAGG 2 cut(s) 419, 1196
Bme1390I CCNGG 1 cut(s) 1172
BmeT110I CYCGRG 3 cut(s) 403, 1658, 1760
BmgBI CACGTC 2 cut(s) 1360, 1528
BmgT120I GGNCC 4 cut(s) 1462, 1463, 1736, 1737
BmiI GGNNCC 8 cut(s) 528, 966, 1010, 1082, 1437, 1464, 1465, 1738
BmrFI CCNGG 1 cut(s) 1172
BmsI GCATC 5 cut(s) 641, 701, 1144, 1792, 2099
BmtI GCTAGC 1 cut(s) 1673
BoxI GACNNNNGTC 1 cut(s) 73
BpiI GAAGAC 2 cut(s) 582, 1065
Bpu10I CCTNAGC 2 cut(s) 1160, 1414
Bpu14I TTCGAA 1 cut(s) 276
BpuEI CTTGAG 2 cut(s) 185, 1556
BsaBI GATNNNNATC 1 cut(s) 610
BsaHI GRCGYC 2 cut(s) 965, 1109
BsaJI CCNNGG 5 cut(s) 419, 436, 1041, 1196, 1657
BsaWI WCCGGW 3 cut(s) 1590, 1645, 1869
BsaXI ACNNNNNCTCC 6 cut(s) 121, 151, 157, 187, 245, 275
Bsc4I CCNNNNNNNGG 6 cut(s) 335, 390, 437, 523, 1432, 1645
Bse118I RCCGGY 3 cut(s) 529, 1396, 1494
Bse1I ACTGG 2 cut(s) 517, 1495
Bse8I GATNNNNATC 1 cut(s) 610
BseAI TCCGGA 1 cut(s) 1869
BseBI CCWGG 1 cut(s) 1172
BseDI CCNNGG 5 cut(s) 419, 436, 1041, 1196, 1657
BseGI GGATG 3 cut(s) 140, 707, 2043
BseJI GATNNNNATC 1 cut(s) 610
BseLI CCNNNNNNNGG 6 cut(s) 335, 390, 437, 523, 1432, 1645
BseMII CTCAG 7 cut(s) 79, 159, 392, 493, 812, 1964, 2006
BseNI ACTGG 2 cut(s) 517, 1495
BsePI GCGCGC 1 cut(s) 849
BseSI GKGCMC 2 cut(s) 1466, 1740
BseXI GCAGC 8 cut(s) 66, 395, 462, 831, 907, 1141, 1405, 2080
BseYI CCCAGC 1 cut(s) 1427
Bsh1236I CGCG 2 cut(s) 851, 1985
BshFI GGCC 6 cut(s) 1175, 1396, 1412, 1464, 1494, 1738
BshNI GGYRCC 2 cut(s) 964, 1080
BsiHKAI GWGCWC 1 cut(s) 167
BsiHKCI CYCGRG 3 cut(s) 403, 1658, 1760
BsiSI CCGG 8 cut(s) 530, 1397, 1495, 1591, 1646, 1817, 1862, 1870
BslFI GGGAC 2 cut(s) 290, 1514
BslI CCNNNNNNNGG 6 cut(s) 335, 390, 437, 523, 1432, 1645
BsmAI GTCTC 2 cut(s) 81, 1481
BsmBI CGTCTC 1 cut(s) 81
BsmFI GGGAC 2 cut(s) 290, 1514
BsmI GAATGC 2 cut(s) 443, 617
BsnI GGCC 6 cut(s) 1175, 1396, 1412, 1464, 1494, 1738
BsoBI CYCGRG 3 cut(s) 403, 1658, 1760
Bsp119I TTCGAA 1 cut(s) 276
Bsp120I GGGCCC 2 cut(s) 1462, 1736
Bsp1286I GDGCHC 5 cut(s) 167, 1011, 1438, 1466, 1740
Bsp13I TCCGGA 1 cut(s) 1869
Bsp1407I TGTACA 1 cut(s) 1354
Bsp143I GATC 9 cut(s) 3, 154, 291, 535, 679, 758, 1567, 1677, 1866
BspANI GGCC 6 cut(s) 1175, 1396, 1412, 1464, 1494, 1738
BspCNI CTCAG 7 cut(s) 78, 158, 391, 492, 811, 1965, 2005
BspEI TCCGGA 1 cut(s) 1869
BspFNI CGCG 2 cut(s) 851, 1985
BspLI GGNNCC 8 cut(s) 528, 966, 1010, 1082, 1437, 1464, 1465, 1738
BspMI ACCTGC 1 cut(s) 1743
BspOI GCTAGC 1 cut(s) 1673
BspPI GGATC 3 cut(s) 162, 1672, 1861
BspT104I TTCGAA 1 cut(s) 276
BspT107I GGYRCC 2 cut(s) 964, 1080
BsrBI CCGCTC 3 cut(s) 487, 846, 1900
BsrFI RCCGGY 3 cut(s) 529, 1396, 1494
BsrGI TGTACA 1 cut(s) 1354
BsrI ACTGG 2 cut(s) 517, 1495
BssAI RCCGGY 3 cut(s) 529, 1396, 1494
BssECI CCNNGG 5 cut(s) 419, 436, 1041, 1196, 1657
BssHII GCGCGC 1 cut(s) 849
BssMI GATC 9 cut(s) 3, 154, 291, 535, 679, 758, 1567, 1677, 1866
BssNI GRCGYC 2 cut(s) 965, 1109
BssSI CACGAG 1 cut(s) 1913
BssT1I CCWWGG 2 cut(s) 419, 1196
Bst2BI CACGAG 1 cut(s) 1913
Bst2UI CCWGG 1 cut(s) 1172
Bst4CI ACNGT 5 cut(s) 338, 663, 703, 1624, 2054
Bst6I CTCTTC 2 cut(s) 748, 1527
BstACI GRCGYC 2 cut(s) 965, 1109
BstAUI TGTACA 1 cut(s) 1354
BstBI TTCGAA 1 cut(s) 276
BstF5I GGATG 3 cut(s) 140, 707, 2043
BstFNI CGCG 2 cut(s) 851, 1985
BstH2I RGCGCY 3 cut(s) 968, 1610, 1973
BstHHI GCGC 9 cut(s) 851, 853, 967, 1040, 1166, 1609, 1828, 1861, 1972
BstKTI GATC 9 cut(s) 6, 157, 294, 538, 682, 761, 1570, 1680, 1869
BstMAI GTCTC 2 cut(s) 81, 1481
BstMBI GATC 9 cut(s) 3, 154, 291, 535, 679, 758, 1567, 1677, 1866
BstNI CCWGG 1 cut(s) 1172
BstNSI RCATGY 5 cut(s) 319, 730, 886, 1069, 1585
BstPAI GACNNNNGTC 1 cut(s) 73
BstSCI CCNGG 1 cut(s) 1170
BstSLI GKGCMC 2 cut(s) 1466, 1740
BstUI CGCG 2 cut(s) 851, 1985
BstV1I GCAGC 8 cut(s) 66, 395, 462, 831, 907, 1141, 1405, 2080
BstV2I GAAGAC 2 cut(s) 582, 1065
BstX2I RGATCY 2 cut(s) 1567, 1866
BstXI CCANNNNNNTGG 2 cut(s) 338, 1550
BstYI RGATCY 2 cut(s) 1567, 1866
BsuRI GGCC 6 cut(s) 1175, 1396, 1412, 1464, 1494, 1738
BtrI CACGTC 2 cut(s) 1360, 1528
BtsCI GGATG 3 cut(s) 140, 707, 2043
BtsI GCAGTG 1 cut(s) 1485
BtsIMutI CAGTG 2 cut(s) 1397, 1485
BveI ACCTGC 1 cut(s) 1743
CfoI GCGC 9 cut(s) 851, 853, 967, 1040, 1166, 1609, 1828, 1861, 1972
Cfr10I RCCGGY 3 cut(s) 529, 1396, 1494
Cfr13I GGNCC 4 cut(s) 1462, 1463, 1736, 1737
CseI GACGC 2 cut(s) 762, 1117
Csp6I GTAC 4 cut(s) 520, 1081, 1355, 1849
CviQI GTAC 4 cut(s) 520, 1081, 1355, 1849
DinI GGCGCC 1 cut(s) 966
DpnI GATC 9 cut(s) 5, 156, 293, 537, 681, 760, 1569, 1679, 1868
DpnII GATC 9 cut(s) 3, 154, 291, 535, 679, 758, 1567, 1677, 1866
EaeI YGGCCR 3 cut(s) 1173, 1394, 1492
Eam1104I CTCTTC 2 cut(s) 748, 1527
EarI CTCTTC 2 cut(s) 748, 1527
EciI GGCGGA 5 cut(s) 165, 700, 1195, 1803, 1910
Eco130I CCWWGG 2 cut(s) 419, 1196
Eco147I AGGCCT 1 cut(s) 1412
Eco24I GRGCYC 4 cut(s) 1011, 1438, 1466, 1740
Eco32I GATATC 1 cut(s) 645
Eco47III AGCGCT 1 cut(s) 1608
Eco57I CTGAAG 1 cut(s) 1365
Eco88I CYCGRG 3 cut(s) 403, 1658, 1760
EcoO109I RGGNCCY 2 cut(s) 1463, 1737
EcoRII CCWGG 1 cut(s) 1170
EcoRV GATATC 1 cut(s) 645
EcoT14I CCWWGG 2 cut(s) 419, 1196
EcoT38I GRGCYC 4 cut(s) 1011, 1438, 1466, 1740
EgeI GGCGCC 1 cut(s) 966
EheI GGCGCC 1 cut(s) 966
ErhI CCWWGG 2 cut(s) 419, 1196
Esp3I CGTCTC 1 cut(s) 81
FaqI GGGAC 2 cut(s) 290, 1514
FauI CCCGC 4 cut(s) 492, 998, 1424, 1430
FbaI TGATCA 2 cut(s) 3, 535
FblI GTMKAC 1 cut(s) 1272
FokI GGATG 3 cut(s) 127, 694, 2050
FriOI GRGCYC 4 cut(s) 1011, 1438, 1466, 1740
FspBI CTAG 8 cut(s) 212, 420, 1115, 1197, 1370, 1511, 1670, 2009
GlaI GCGC 9 cut(s) 850, 852, 966, 1039, 1165, 1608, 1827, 1860, 1971
GsaI CCCAGC 1 cut(s) 1431
HaeII RGCGCY 3 cut(s) 968, 1610, 1973
HaeIII GGCC 6 cut(s) 1175, 1396, 1412, 1464, 1494, 1738
HapII CCGG 8 cut(s) 530, 1397, 1495, 1591, 1646, 1817, 1862, 1870
HgaI GACGC 2 cut(s) 762, 1117
HhaI GCGC 9 cut(s) 851, 853, 967, 1040, 1166, 1609, 1828, 1861, 1972
Hin1I GRCGYC 2 cut(s) 965, 1109
Hin6I GCGC 9 cut(s) 849, 851, 965, 1038, 1164, 1607, 1826, 1859, 1970
HinP1I GCGC 9 cut(s) 849, 851, 965, 1038, 1164, 1607, 1826, 1859, 1970
HincII GTYRAC 1 cut(s) 514
HindII GTYRAC 1 cut(s) 514
HpaI GTTAAC 1 cut(s) 514
HpaII CCGG 8 cut(s) 530, 1397, 1495, 1591, 1646, 1817, 1862, 1870
HphI GGTGA 6 cut(s) 1013, 1117, 1300, 1636, 1951, 1999
Hpy166II GTNNAC 6 cut(s) 514, 1273, 1355, 1357, 1618, 1627
Hpy188III TCNNGA 7 cut(s) 37, 236, 648, 677, 1660, 1760, 1870
Hpy8I GTNNAC 6 cut(s) 514, 1273, 1355, 1357, 1618, 1627
Hpy99I CGWCG 3 cut(s) 97, 778, 2030
HpyAV CCTTC 8 cut(s) 423, 956, 1037, 1071, 1228, 1831, 1883, 1930
HpyCH4III ACNGT 5 cut(s) 338, 663, 703, 1624, 2054
HpyCH4IV ACGT 5 cut(s) 598, 716, 1351, 1359, 1527
HpySE526I ACGT 5 cut(s) 598, 716, 1351, 1359, 1527
Hsp92I GRCGYC 2 cut(s) 965, 1109
HspAI GCGC 9 cut(s) 849, 851, 965, 1038, 1164, 1607, 1826, 1859, 1970
KasI GGCGCC 1 cut(s) 964
Kpn2I TCCGGA 1 cut(s) 1869
KpnI GGTACC 1 cut(s) 1084
KroI GCCGGC 2 cut(s) 529, 1396
KroNI GCCGGC 2 cut(s) 531, 1398
Ksp22I TGATCA 2 cut(s) 3, 535
KspAI GTTAAC 1 cut(s) 514
Kzo9I GATC 9 cut(s) 3, 154, 291, 535, 679, 758, 1567, 1677, 1866
LmnI GCTCC 9 cut(s) 62, 440, 492, 526, 1014, 1441, 1555, 1843, 1897
Lsp1109I GCAGC 8 cut(s) 66, 395, 462, 831, 907, 1141, 1405, 2080
LweI GCATC 5 cut(s) 641, 701, 1144, 1792, 2099
MaeI CTAG 8 cut(s) 212, 420, 1115, 1197, 1370, 1511, 1670, 2009
MaeII ACGT 5 cut(s) 598, 716, 1351, 1359, 1527
MaeIII GTNAC 8 cut(s) 549, 599, 657, 781, 1105, 1682, 1702, 1987
MalI GATC 9 cut(s) 5, 156, 293, 537, 681, 760, 1569, 1679, 1868
MbiI CCGCTC 3 cut(s) 487, 846, 1900
MboI GATC 9 cut(s) 3, 154, 291, 535, 679, 758, 1567, 1677, 1866
MboII GAAGA 9 cut(s) 587, 735, 1070, 1318, 1358, 1370, 1514, 1577, 2011
MfeI CAATTG 3 cut(s) 866, 1013, 1651
MflI RGATCY 2 cut(s) 1567, 1866
MhlI GDGCHC 5 cut(s) 167, 1011, 1438, 1466, 1740
Mly113I GGCGCC 1 cut(s) 965
MlyI GAGTC 8 cut(s) 263, 471, 1349, 1626, 1735, 1787, 1814, 1984
MmeI TCCRAC 6 cut(s) 84, 104, 132, 218, 699, 1902
MroI TCCGGA 1 cut(s) 1869
MroNI GCCGGC 2 cut(s) 529, 1396
MseI TTAA 2 cut(s) 513, 1959
MslI CAYNNNNRTG 3 cut(s) 95, 731, 2107
MspA1I CMGCKG 3 cut(s) 802, 822, 1431
MspI CCGG 8 cut(s) 530, 1397, 1495, 1591, 1646, 1817, 1862, 1870
MspR9I CCNGG 1 cut(s) 1172
MunI CAATTG 3 cut(s) 866, 1013, 1651
Mva1269I GAATGC 2 cut(s) 443, 617
MvaI CCWGG 1 cut(s) 1172
MvnI CGCG 2 cut(s) 851, 1985
NaeI GCCGGC 2 cut(s) 531, 1398
NarI GGCGCC 1 cut(s) 965
NdeII GATC 9 cut(s) 3, 154, 291, 535, 679, 758, 1567, 1677, 1866
NgoMIV GCCGGC 2 cut(s) 529, 1396
NheI GCTAGC 1 cut(s) 1669
NlaIV GGNNCC 8 cut(s) 528, 966, 1010, 1082, 1437, 1464, 1465, 1738
NmeAIII GCCGAG 4 cut(s) 204, 1066, 1760, 1802
NmuCI GTSAC 7 cut(s) 549, 599, 657, 1105, 1682, 1702, 1987
NspI RCATGY 5 cut(s) 319, 730, 886, 1069, 1585
NspV TTCGAA 1 cut(s) 276
PaeI GCATGC 2 cut(s) 730, 886
PaeR7I CTCGAG 1 cut(s) 1760
PalAI GGCGCGCC 1 cut(s) 849
PauI GCGCGC 1 cut(s) 849
PceI AGGCCT 1 cut(s) 1412
PciI ACATGT 2 cut(s) 1065, 1581
PcsI WCGNNNNNNNCGW 2 cut(s) 213, 1802
PctI GAATGC 2 cut(s) 443, 617
PdiI GCCGGC 2 cut(s) 531, 1398
PfeI GAWTC 4 cut(s) 86, 116, 606, 1121
PflFI GACNNNGTC 2 cut(s) 97, 1993
PflMI CCANNNNNTGG 1 cut(s) 523
PleI GAGTC 8 cut(s) 262, 471, 1348, 1626, 1734, 1787, 1814, 1984
PluTI GGCGCC 1 cut(s) 968
PpsI GAGTC 8 cut(s) 262, 471, 1348, 1626, 1734, 1787, 1814, 1984
PscI ACATGT 2 cut(s) 1065, 1581
PshAI GACNNNNGTC 1 cut(s) 73
PsiI TTATAA 1 cut(s) 954
Psp6I CCWGG 1 cut(s) 1170
PspFI CCCAGC 1 cut(s) 1427
PspGI CCWGG 1 cut(s) 1170
PspN4I GGNNCC 8 cut(s) 528, 966, 1010, 1082, 1437, 1464, 1465, 1738
PspOMI GGGCCC 2 cut(s) 1462, 1736
PspPI GGNCC 4 cut(s) 1462, 1463, 1736, 1737
PsuI RGATCY 2 cut(s) 1567, 1866
PsyI GACNNNGTC 2 cut(s) 97, 1993
PteI GCGCGC 1 cut(s) 849
PvuII CAGCTG 1 cut(s) 802
RsaI GTAC 4 cut(s) 521, 1082, 1356, 1850
RsaNI GTAC 4 cut(s) 520, 1081, 1355, 1849
RseI CAYNNNNRTG 3 cut(s) 95, 731, 2107
SaqAI TTAA 2 cut(s) 513, 1959
Sau3AI GATC 9 cut(s) 3, 154, 291, 535, 679, 758, 1567, 1677, 1866
Sau96I GGNCC 4 cut(s) 1462, 1463, 1736, 1737
SchI GAGTC 8 cut(s) 263, 471, 1349, 1626, 1735, 1787, 1814, 1984
ScrFI CCNGG 1 cut(s) 1172
SduI GDGCHC 5 cut(s) 167, 1011, 1438, 1466, 1740
SfaNI GCATC 5 cut(s) 641, 701, 1144, 1792, 2099
SfoI GGCGCC 1 cut(s) 966
Sfr274I CTCGAG 1 cut(s) 1760
SfuI TTCGAA 1 cut(s) 276
SgsI GGCGCGCC 1 cut(s) 849
SlaI CTCGAG 1 cut(s) 1760
SmiMI CAYNNNNRTG 3 cut(s) 95, 731, 2107
SmlI CTYRAG 3 cut(s) 200, 1571, 1760
SmoI CTYRAG 3 cut(s) 200, 1571, 1760
SphI GCATGC 2 cut(s) 730, 886
SseBI AGGCCT 1 cut(s) 1412
SspDI GGCGCC 1 cut(s) 964
SspMI CTAG 8 cut(s) 212, 420, 1115, 1197, 1370, 1511, 1670, 2009
StuI AGGCCT 1 cut(s) 1412
StyD4I CCNGG 1 cut(s) 1170
StyI CCWWGG 2 cut(s) 419, 1196
TaaI ACNGT 5 cut(s) 338, 663, 703, 1624, 2054
TaiI ACGT 5 cut(s) 601, 719, 1354, 1362, 1530
TatI WGTACW 3 cut(s) 519, 1354, 1848
TauI GCSGC 4 cut(s) 433, 849, 907, 1178
TfiI GAWTC 4 cut(s) 86, 116, 606, 1121
Tru1I TTAA 2 cut(s) 513, 1959
Tru9I TTAA 2 cut(s) 513, 1959
TscAI CASTG 2 cut(s) 1397, 1485
TseFI GTSAC 7 cut(s) 549, 599, 657, 1105, 1682, 1702, 1987
TseI GCWGC 8 cut(s) 54, 408, 450, 819, 895, 1129, 1418, 2093
Tsp45I GTSAC 7 cut(s) 549, 599, 657, 1105, 1682, 1702, 1987
TspDTI ATGAA 6 cut(s) 598, 609, 749, 938, 1131, 1393
TspGWI ACGGA 6 cut(s) 479, 618, 1215, 1670, 1919, 2057
TspRI CASTG 2 cut(s) 1397, 1485
Tth111I GACNNNGTC 2 cut(s) 97, 1993
Van91I CCANNNNNTGG 1 cut(s) 523
XapI RAATTY 1 cut(s) 1295
XceI RCATGY 5 cut(s) 319, 730, 886, 1069, 1585
XhoI CTCGAG 1 cut(s) 1760
XmaJI CCTAGG 2 cut(s) 419, 1196
XmiI GTMKAC 1 cut(s) 1272
XspI CTAG 8 cut(s) 212, 420, 1115, 1197, 1370, 1511, 1670, 2009
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.