FvH4_7g00080

citrate synthase

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
Physical Location & Seq
Forward (+)
667694 .. 674302
6609 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g00080.t1

Sequence Viewer

Length: 1410 bp
ATGGCCTTCTTCCGCACTGTCACCAAGCTCCGTTCTCGTCTCGGCCAACCGTCTAGTCTGAGAGATTCCGTCAGATGCCTTCAAACGCAGGCCTCCTCCGATCTCGACCTTCATTCTCAGCTTAAGGAGTTGATTCCAGAACAGCAGGAACGTCTGAAGAAACTGAAGAAAGAACATGGAAAAGTACAATTGGGCACTATCACTGTTGATATGGTGATTGGTGGAATGAGAGGAATGACGGGGTTGCTGTGGGAAACCTCTTTACTTGATCCAGATGAGGGCATTCGCTTTAGGGGTTTGTCAATTCCAGAATGCCAGAAAGTATTACCAGGTGCAACGCCTGGTGGTGAACCTTTGCCCGAGGGCCTTCTCTGGCTACTCTTAACAGGAAAGGTACCTAGCAAGGAGCAAGTAGATGCATTATCCAGTGAATTAAGGAGTCGTGCCAAAGTTCCAGATTATGTGTTCAAGGCCATTGATGCTCTGCCTGTTGGAGCACATCCAATGACTCAGTTCACAACTGGTGTTATGGCCCTCCAGGTTCAGAGTGAATTTCAGAAGGCATATGACAAGGGAATACCAAAATCAAGGTACTGGGAGCCAACTTATGAAGACTCACTTAGTCTGATTGCACAACTGCCGGTGGTAGCTTCTTATGTGTATCGAAGGATATATAAGGGTGGAAGAATGATACCTGTTGATGACTCTCTGGATTATGGTGGAAATTTTTCACATTTGTTAGGATTTGACGATCACAAAATGCAAGAGCTTATGAGGCTTTATGTCACTATTCATAGTGATCATGAAGGTGGGAATGTCAGTGCTCATACTGGTCATTTAGTTGCTAGTGCACTTTCAGATCCTTTTCTTTCATTTGCTGCTGCATTAAATGGTTTGGCTGGTCCACTTCATGGTTTGGCCAATCAGGAAGTTTTACTTTGGATAAAATCTGTGGTTGATGAATGTGGAGAGAACATCACTAAGGACCAGTTAAAAGATTATGTCTGGAAAACATTAAACAGTGGGAAGGTTGTTCCTGGTTTTGGCCATGGGGTTTTGCGTAAAACAGATCCACGATATACATGTCAGAGGGAGTTTGCTTTGAAGCACTTGCCTGACGATCCTCTGTTCCGGCTGGTCTCCAAGCTTTATGATGTTGTGCCTCCCATACTGACTGAACTAGGCAAGGTTAAAAACCCCTGGCCCAATGTAGATGCTCATAGTGGTGTTTTGTTGAACCACTTTGGTTTGACTGAGGCAAGATATTTTACTGTTCTTTTTGGGGTCTCAAGGAGTATCGGGATTGGCTCACAGTTGATTTGGGATCGAGCTCTTGGTTTGCCTCTTGAAAGGCCCAAGAGTGTTACAATGGAGTCACTTGAAAGTTTCTGCAAGAAAGCAGCTTCCTGA

Protein Analysis

470

Amino Acids

52.01

Weight (kDa)

8.13

Isoelectric Point (pI)

31.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Citrate_synt PF00285 75 - 453 1.1e-92 Citrate synthase, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 394
AccB1I GGYRCC 1 cut(s) 394
AccB7I CCANNNNNTGG 1 cut(s) 911
AciI CCGC 1 cut(s) 13
AclWI GGATC 5 cut(s) 263, 854, 1064, 1115, 1332
AcoI YGGCCR 3 cut(s) 43, 918, 1045
AcsI RAATTY 2 cut(s) 551, 724
AcuI CTGAAG 2 cut(s) 176, 185
AfaI GTAC 3 cut(s) 186, 396, 593
AfiI CCNNNNNNNGG 3 cut(s) 278, 911, 1043
AflII CTTAAG 1 cut(s) 122
AflIII ACRYGT 1 cut(s) 1082
AgsI TTSAA 6 cut(s) 83, 469, 1105, 1237, 1349, 1382
AjnI CCWGG 5 cut(s) 328, 340, 537, 1036, 1199
AluBI AGCT 7 cut(s) 28, 121, 650, 769, 1147, 1331, 1403
AluI AGCT 7 cut(s) 28, 121, 650, 769, 1147, 1331, 1403
Alw21I GWGCWC 4 cut(s) 499, 826, 853, 1333
Alw26I GTCTC 3 cut(s) 44, 1144, 1291
Alw44I GTGCAC 1 cut(s) 849
AlwI GGATC 5 cut(s) 263, 854, 1064, 1115, 1332
Ama87I CYCGRG 1 cut(s) 359
ApaLI GTGCAC 1 cut(s) 849
ApeKI GCWGC 3 cut(s) 878, 881, 1400
ApoI RAATTY 2 cut(s) 551, 724
Asp700I GAANNNNTTC 1 cut(s) 727
Asp718I GGTACC 1 cut(s) 394
AspS9I GGNCC 6 cut(s) 364, 532, 902, 985, 1203, 1353
AsuHPI GGTGA 3 cut(s) 13, 226, 359
AvaI CYCGRG 1 cut(s) 359
AvaII GGWCC 2 cut(s) 902, 985
BaeGI GKGCMC 2 cut(s) 197, 853
BalI TGGCCA 2 cut(s) 920, 1047
BanI GGYRCC 1 cut(s) 394
BanII GRGCYC 1 cut(s) 1333
BbsI GAAGAC 1 cut(s) 618
Bbv12I GWGCWC 4 cut(s) 499, 826, 853, 1333
BbvI GCAGC 2 cut(s) 865, 868
BciT130I CCWGG 5 cut(s) 330, 342, 539, 1038, 1201
BclI TGATCA 1 cut(s) 799
BcoDI GTCTC 3 cut(s) 44, 1144, 1291
BfaI CTAG 4 cut(s) 54, 399, 846, 1181
BfrI CTTAAG 1 cut(s) 122
BisI GCNGC 3 cut(s) 879, 882, 1401
BlsI GCNGC 3 cut(s) 880, 883, 1402
Bme1390I CCNGG 5 cut(s) 330, 342, 539, 1038, 1201
Bme18I GGWCC 2 cut(s) 902, 985
BmeT110I CYCGRG 1 cut(s) 359
BmgT120I GGNCC 6 cut(s) 364, 532, 902, 985, 1203, 1353
BmiI GGNNCC 2 cut(s) 396, 600
BmrFI CCNGG 5 cut(s) 330, 342, 539, 1038, 1201
BmrI ACTGGG 1 cut(s) 604
BmsI GCATC 4 cut(s) 65, 406, 469, 1204
BmuI ACTGGG 1 cut(s) 604
BpiI GAAGAC 1 cut(s) 618
BpmI CTGGAG 1 cut(s) 521
BpuEI CTTGAG 1 cut(s) 1273
BsaI GGTCTC 2 cut(s) 1144, 1291
BsaJI CCNNGG 3 cut(s) 360, 1048, 1199
Bsc4I CCNNNNNNNGG 3 cut(s) 278, 911, 1043
Bse118I RCCGGY 1 cut(s) 640
Bse1I ACTGG 5 cut(s) 426, 526, 599, 835, 988
BseBI CCWGG 5 cut(s) 330, 342, 539, 1038, 1201
BseDI CCNNGG 3 cut(s) 360, 1048, 1199
BseGI GGATG 1 cut(s) 499
BseLI CCNNNNNNNGG 3 cut(s) 278, 911, 1043
BseMII CTCAG 4 cut(s) 50, 131, 524, 1245
BseNI ACTGG 5 cut(s) 426, 526, 599, 835, 988
BseRI GAGGAG 1 cut(s) 85
BseSI GKGCMC 2 cut(s) 197, 853
BseXI GCAGC 2 cut(s) 865, 868
BshNI GGYRCC 1 cut(s) 394
BsiHKAI GWGCWC 4 cut(s) 499, 826, 853, 1333
BsiHKCI CYCGRG 1 cut(s) 359
BsiSI CCGG 2 cut(s) 641, 1132
BslI CCNNNNNNNGG 3 cut(s) 278, 911, 1043
BsmAI GTCTC 3 cut(s) 44, 1144, 1291
BsmBI CGTCTC 1 cut(s) 44
BsmI GAATGC 2 cut(s) 282, 317
Bso31I GGTCTC 2 cut(s) 1144, 1291
BsoBI CYCGRG 1 cut(s) 359
Bsp1286I GDGCHC 5 cut(s) 197, 499, 826, 853, 1333
Bsp143I GATC 8 cut(s) 100, 268, 751, 799, 859, 1069, 1120, 1324
Bsp19I CCATGG 1 cut(s) 1048
BspACI CCGC 1 cut(s) 13
BspCNI CTCAG 4 cut(s) 51, 130, 523, 1246
BspHI TCATGA 1 cut(s) 802
BspLI GGNNCC 2 cut(s) 396, 600
BspPI GGATC 5 cut(s) 263, 854, 1064, 1115, 1332
BspT107I GGYRCC 1 cut(s) 394
BspTI CTTAAG 1 cut(s) 122
BspTNI GGTCTC 2 cut(s) 1144, 1291
BsrFI RCCGGY 1 cut(s) 640
BsrI ACTGG 5 cut(s) 426, 526, 599, 835, 988
BssAI RCCGGY 1 cut(s) 640
BssECI CCNNGG 3 cut(s) 360, 1048, 1199
BssMI GATC 8 cut(s) 100, 268, 751, 799, 859, 1069, 1120, 1324
BssT1I CCWWGG 1 cut(s) 1048
Bst2UI CCWGG 5 cut(s) 330, 342, 539, 1038, 1201
Bst4CI ACNGT 6 cut(s) 19, 51, 205, 1022, 1273, 1314
BstAFI CTTAAG 1 cut(s) 122
BstC8I GCNNGC 1 cut(s) 90
BstDEI CTNAG 6 cut(s) 59, 117, 510, 620, 981, 1254
BstDSI CCRYGG 1 cut(s) 1048
BstF5I GGATG 1 cut(s) 499
BstKTI GATC 8 cut(s) 103, 271, 754, 802, 862, 1072, 1123, 1327
BstMAI GTCTC 3 cut(s) 44, 1144, 1291
BstMBI GATC 8 cut(s) 100, 268, 751, 799, 859, 1069, 1120, 1324
BstMWI GCNNNNNNNGC 2 cut(s) 479, 775
BstNI CCWGG 5 cut(s) 330, 342, 539, 1038, 1201
BstNSI RCATGY 1 cut(s) 1086
BstSCI CCNGG 5 cut(s) 328, 340, 537, 1036, 1199
BstSLI GKGCMC 2 cut(s) 197, 853
BstV1I GCAGC 2 cut(s) 865, 868
BstV2I GAAGAC 1 cut(s) 618
BstX2I RGATCY 2 cut(s) 859, 1069
BstYI RGATCY 2 cut(s) 859, 1069
BtgI CCRYGG 1 cut(s) 1048
BtsCI GGATG 1 cut(s) 499
BtsIMutI CAGTG 5 cut(s) 15, 201, 433, 826, 1027
Cac8I GCNNGC 1 cut(s) 90
CciI TCATGA 1 cut(s) 802
Cfr10I RCCGGY 1 cut(s) 640
Cfr13I GGNCC 6 cut(s) 364, 532, 902, 985, 1203, 1353
CsiI ACCWGGT 1 cut(s) 328
Csp6I GTAC 3 cut(s) 185, 395, 592
CviAII CATG 5 cut(s) 176, 803, 911, 1049, 1083
CviQI GTAC 3 cut(s) 185, 395, 592
DdeI CTNAG 6 cut(s) 59, 117, 510, 620, 981, 1254
DpnI GATC 8 cut(s) 102, 270, 753, 801, 861, 1071, 1122, 1326
DpnII GATC 8 cut(s) 100, 268, 751, 799, 859, 1069, 1120, 1324
EaeI YGGCCR 3 cut(s) 43, 918, 1045
Ecl136II GAGCTC 1 cut(s) 1331
Eco130I CCWWGG 1 cut(s) 1048
Eco147I AGGCCT 1 cut(s) 92
Eco24I GRGCYC 1 cut(s) 1333
Eco31I GGTCTC 2 cut(s) 1144, 1291
Eco47I GGWCC 2 cut(s) 902, 985
Eco53kI GAGCTC 1 cut(s) 1331
Eco57I CTGAAG 2 cut(s) 176, 185
Eco88I CYCGRG 1 cut(s) 359
EcoICRI GAGCTC 1 cut(s) 1331
EcoO109I RGGNCCY 1 cut(s) 364
EcoRII CCWGG 5 cut(s) 328, 340, 537, 1036, 1199
EcoT14I CCWWGG 1 cut(s) 1048
EcoT22I ATGCAT 1 cut(s) 421
EcoT38I GRGCYC 1 cut(s) 1333
ErhI CCWWGG 1 cut(s) 1048
Esp3I CGTCTC 1 cut(s) 44
FaeI CATG 5 cut(s) 179, 806, 914, 1052, 1086
FalI AAGNNNNNCTT 4 cut(s) 603, 635, 921, 953
FatI CATG 5 cut(s) 175, 802, 910, 1048, 1082
FauNDI CATATG 1 cut(s) 565
FbaI TGATCA 1 cut(s) 799
Fnu4HI GCNGC 3 cut(s) 879, 882, 1401
FokI GGATG 1 cut(s) 486
FriOI GRGCYC 1 cut(s) 1333
Fsp4HI GCNGC 3 cut(s) 879, 882, 1401
FspBI CTAG 4 cut(s) 54, 399, 846, 1181
GluI GCNGC 3 cut(s) 879, 882, 1401
GsuI CTGGAG 1 cut(s) 521
HapII CCGG 2 cut(s) 641, 1132
Hin1II CATG 5 cut(s) 179, 806, 914, 1052, 1086
HindIII AAGCTT 1 cut(s) 1145
HinfI GANTC 7 cut(s) 65, 133, 439, 508, 614, 704, 1373
HpaII CCGG 2 cut(s) 641, 1132
HphI GGTGA 3 cut(s) 13, 226, 359
Hpy166II GTNNAC 4 cut(s) 350, 516, 851, 905
Hpy188I TCNGA 9 cut(s) 60, 74, 100, 156, 546, 558, 627, 859, 1089
Hpy8I GTNNAC 4 cut(s) 350, 516, 851, 905
HpyAV CCTTC 8 cut(s) 16, 89, 119, 377, 553, 660, 800, 1021
HpyCH4III ACNGT 6 cut(s) 19, 51, 205, 1022, 1273, 1314
HpyCH4IV ACGT 1 cut(s) 151
HpyCH4V TGCA 7 cut(s) 335, 419, 632, 763, 851, 884, 1392
HpyF10VI GCNNNNNNNGC 2 cut(s) 479, 775
HpyF3I CTNAG 6 cut(s) 59, 117, 510, 620, 981, 1254
HpySE526I ACGT 1 cut(s) 151
Hsp92II CATG 5 cut(s) 179, 806, 914, 1052, 1086
KpnI GGTACC 1 cut(s) 398
Ksp22I TGATCA 1 cut(s) 799
Kzo9I GATC 8 cut(s) 100, 268, 751, 799, 859, 1069, 1120, 1324
LmnI GCTCC 4 cut(s) 33, 406, 494, 598
Lsp1109I GCAGC 2 cut(s) 865, 868
LweI GCATC 4 cut(s) 65, 406, 469, 1204
MabI ACCWGGT 1 cut(s) 328
MaeI CTAG 4 cut(s) 54, 399, 846, 1181
MaeII ACGT 1 cut(s) 151
MaeIII GTNAC 4 cut(s) 19, 784, 1363, 1374
MalI GATC 8 cut(s) 102, 270, 753, 801, 861, 1071, 1122, 1326
MboI GATC 8 cut(s) 100, 268, 751, 799, 859, 1069, 1120, 1324
MboII GAAGA 4 cut(s) 169, 178, 623, 696
MfeI CAATTG 1 cut(s) 188
MflI RGATCY 2 cut(s) 859, 1069
MhlI GDGCHC 5 cut(s) 197, 499, 826, 853, 1333
MlsI TGGCCA 2 cut(s) 920, 1047
MluCI AATT 5 cut(s) 188, 303, 431, 551, 724
MluNI TGGCCA 2 cut(s) 920, 1047
MlyI GAGTC 5 cut(s) 448, 502, 608, 698, 1382
MmeI TCCRAC 1 cut(s) 472
Mox20I TGGCCA 2 cut(s) 920, 1047
Mph1103I ATGCAT 1 cut(s) 421
MroXI GAANNNNTTC 1 cut(s) 727
MscI TGGCCA 2 cut(s) 920, 1047
MseI TTAA 7 cut(s) 123, 383, 434, 887, 992, 1016, 1191
MslI CAYNNNNRTG 2 cut(s) 807, 1224
Msp20I TGGCCA 2 cut(s) 920, 1047
MspCI CTTAAG 1 cut(s) 122
MspI CCGG 2 cut(s) 641, 1132
MspR9I CCNGG 5 cut(s) 330, 342, 539, 1038, 1201
MunI CAATTG 1 cut(s) 188
Mva1269I GAATGC 2 cut(s) 282, 317
MvaI CCWGG 5 cut(s) 330, 342, 539, 1038, 1201
MwoI GCNNNNNNNGC 2 cut(s) 479, 775
NcoI CCATGG 1 cut(s) 1048
NdeI CATATG 1 cut(s) 565
NdeII GATC 8 cut(s) 100, 268, 751, 799, 859, 1069, 1120, 1324
NlaIII CATG 5 cut(s) 179, 806, 914, 1052, 1086
NlaIV GGNNCC 2 cut(s) 396, 600
NmeAIII GCCGAG 1 cut(s) 21
NmuCI GTSAC 3 cut(s) 19, 784, 1374
NsiI ATGCAT 1 cut(s) 421
NspI RCATGY 1 cut(s) 1086
PagI TCATGA 1 cut(s) 802
PceI AGGCCT 1 cut(s) 92
PciI ACATGT 1 cut(s) 1082
PctI GAATGC 2 cut(s) 282, 317
PdmI GAANNNNTTC 1 cut(s) 727
PfeI GAWTC 2 cut(s) 65, 133
PflMI CCANNNNNTGG 1 cut(s) 911
PkrI GCNGC 3 cut(s) 880, 883, 1402
PleI GAGTC 5 cut(s) 447, 502, 608, 698, 1381
PpsI GAGTC 5 cut(s) 447, 502, 608, 698, 1381
PscI ACATGT 1 cut(s) 1082
Psp124BI GAGCTC 1 cut(s) 1333
Psp6I CCWGG 5 cut(s) 328, 340, 537, 1036, 1199
PspGI CCWGG 5 cut(s) 328, 340, 537, 1036, 1199
PspN4I GGNNCC 2 cut(s) 396, 600
PspPI GGNCC 6 cut(s) 364, 532, 902, 985, 1203, 1353
PsuI RGATCY 2 cut(s) 859, 1069
RsaI GTAC 3 cut(s) 186, 396, 593
RsaNI GTAC 3 cut(s) 185, 395, 592
RseI CAYNNNNRTG 2 cut(s) 807, 1224
SacI GAGCTC 1 cut(s) 1333
SaqAI TTAA 7 cut(s) 123, 383, 434, 887, 992, 1016, 1191
SatI GCNGC 3 cut(s) 879, 882, 1401
Sau3AI GATC 8 cut(s) 100, 268, 751, 799, 859, 1069, 1120, 1324
Sau96I GGNCC 6 cut(s) 364, 532, 902, 985, 1203, 1353
SchI GAGTC 5 cut(s) 448, 502, 608, 698, 1382
ScrFI CCNGG 5 cut(s) 330, 342, 539, 1038, 1201
SduI GDGCHC 5 cut(s) 197, 499, 826, 853, 1333
SexAI ACCWGGT 1 cut(s) 328
SfaNI GCATC 4 cut(s) 65, 406, 469, 1204
SinI GGWCC 2 cut(s) 902, 985
SmiMI CAYNNNNRTG 2 cut(s) 807, 1224
SmlI CTYRAG 2 cut(s) 122, 1288
SmoI CTYRAG 2 cut(s) 122, 1288
Sse9I AATT 5 cut(s) 188, 303, 431, 551, 724
SseBI AGGCCT 1 cut(s) 92
SsiI CCGC 1 cut(s) 13
SspMI CTAG 4 cut(s) 54, 399, 846, 1181
SstI GAGCTC 1 cut(s) 1333
StuI AGGCCT 1 cut(s) 92
StyD4I CCNGG 5 cut(s) 328, 340, 537, 1036, 1199
StyI CCWWGG 1 cut(s) 1048
TaaI ACNGT 6 cut(s) 19, 51, 205, 1022, 1273, 1314
TaiI ACGT 1 cut(s) 154
TaqI TCGA 3 cut(s) 105, 664, 1327
TasI AATT 5 cut(s) 188, 303, 431, 551, 724
TatI WGTACW 1 cut(s) 184
TfiI GAWTC 2 cut(s) 65, 133
Tru1I TTAA 7 cut(s) 123, 383, 434, 887, 992, 1016, 1191
Tru9I TTAA 7 cut(s) 123, 383, 434, 887, 992, 1016, 1191
TscAI CASTG 5 cut(s) 22, 208, 433, 826, 1027
TseFI GTSAC 3 cut(s) 19, 784, 1374
TseI GCWGC 3 cut(s) 878, 881, 1400
Tsp45I GTSAC 3 cut(s) 19, 784, 1374
TspDTI ATGAA 7 cut(s) 101, 624, 782, 819, 861, 899, 975
TspGWI ACGGA 2 cut(s) 20, 58
TspRI CASTG 5 cut(s) 22, 208, 433, 826, 1027
Van91I CCANNNNNTGG 1 cut(s) 911
Vha464I CTTAAG 1 cut(s) 122
VneI GTGCAC 1 cut(s) 849
VpaK11BI GGWCC 2 cut(s) 902, 985
XapI RAATTY 2 cut(s) 551, 724
XceI RCATGY 1 cut(s) 1086
XmnI GAANNNNTTC 1 cut(s) 727
XspI CTAG 4 cut(s) 54, 399, 846, 1181
Zsp2I ATGCAT 1 cut(s) 421
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.