Rmu_sc0004761.1_g000015

citrate synthase

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004761.1
Physical Location & Seq
Reverse (-)
61748 .. 67943
6196 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004761.1_g000015.1.cds

Sequence Viewer

Length: 1410 bp
atggcgttcctgcgcggtgtctccaagctccgttcacgtctcggccagcagcctagtctccgtgattccgtcagatggcttcaaacgcagacctcctccgatctcgaccttcattctcagttgaaggaattgattccagaacaacaggagcgtctgaagaaactgaaggcagagcatggaaaagtacaattgggcaatatcactgttgatatggtgattggtggaatgaggggaatgacggggttgctgtgggaaacctctttacttgatccagatgaggggattcgctttaggggtttgtcaattccagaatgccagaaagtattaccagctgcaaagcctggtggtgaacctttgcccgagggccttctctggctacttttaacaggaaaggtaccaagcaaggagcaagtagatgcattatccagcgaattgaggagtcgtgccaaagttccagattatgtgttcaaggccattgatgctctgcctgttggagcacatccaatgactcaatttgcaactggtgttatggcgctccaggttgagagtgaattctcgaaggcatatgacaagggaataccaaagtcaaagtactgggagccaacttatgaggattcacttagtctgattgcacaagtgccggtggtagcttcctatgtgtatcgaaggatatataaggatggaaaaataatacccgttgatgactctctggattatggggcaaattttgcacatttgttaggatttgacgatcacaaaatgcaagagcttatgaggctttatgtcaccatccatagtgatcatgaaggcgggaatgtcagtgctcataccggccatttagttgctagtgcactgtcagatccttatctttcatttgcagcggcattaaatggtttagctggtccacttcatggtttggctaatcaggaagttttgctttggataaaatctgtggtagatgaatgtggagagaacataactacagagcagttgaaggactatatatggaaaacattaaacagtgggaaggttgttcctggtttcggccatggagttttgcgtaaaacagatccacgatatacatgtcagagggagtttgcattgaagcacatgcctgatgatcctctgtttcagctggtgtccaagctttatgatgttgtgcctcccatacttaccgaactaggcaaggttaaaaatccctggcccaacgtagatgctcatagtggtgtactgttgaaccacttcggtttgactgaggcaagatattttactgttctttttggcgtctcaaggagtatcgggattggctctcagttgatatgggaccgagctcttggtctgcctcttgaaaggcccaagagtgttacgatggagtcacttgaaagttactgcaagaaagcagcttcctga

Protein Analysis

469

Amino Acids

51.99

Weight (kDa)

6.71

Isoelectric Point (pI)

32.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 394
AccB1I GGYRCC 1 cut(s) 394
AccB7I CCANNNNNTGG 1 cut(s) 911
AccII CGCG 1 cut(s) 15
AciI CCGC 3 cut(s) 15, 810, 881
AclWI GGATC 4 cut(s) 263, 854, 1064, 1115
AcoI YGGCCR 3 cut(s) 43, 832, 1045
AcsI RAATTY 2 cut(s) 551, 724
AcuI CTGAAG 2 cut(s) 176, 185
AcyI GRCGYC 1 cut(s) 1284
AfaI GTAC 4 cut(s) 186, 396, 593, 1230
AfiI CCNNNNNNNGG 4 cut(s) 75, 278, 911, 1043
AflIII ACRYGT 1 cut(s) 1082
AgsI TTSAA 8 cut(s) 83, 124, 469, 994, 1105, 1237, 1349, 1382
AjiI CACGTC 1 cut(s) 38
AjnI CCWGG 4 cut(s) 340, 537, 1036, 1199
AluBI AGCT 9 cut(s) 28, 332, 650, 769, 899, 1135, 1147, 1331, 1403
AluI AGCT 9 cut(s) 28, 332, 650, 769, 899, 1135, 1147, 1331, 1403
Alw21I GWGCWC 4 cut(s) 499, 826, 853, 1333
Alw26I GTCTC 4 cut(s) 25, 44, 62, 1291
Alw44I GTGCAC 1 cut(s) 849
AlwI GGATC 4 cut(s) 263, 854, 1064, 1115
Ama87I CYCGRG 1 cut(s) 359
AoxI GGCC 7 cut(s) 43, 364, 471, 832, 1045, 1202, 1352
ApaLI GTGCAC 1 cut(s) 849
ApeKI GCWGC 4 cut(s) 49, 332, 878, 1400
ApoI RAATTY 2 cut(s) 551, 724
Asp700I GAANNNNTTC 2 cut(s) 132, 1241
Asp718I GGTACC 1 cut(s) 394
AspLEI GCGC 2 cut(s) 15, 535
AspS9I GGNCC 5 cut(s) 364, 902, 1203, 1324, 1353
AsuHPI GGTGA 3 cut(s) 226, 359, 778
AvaI CYCGRG 1 cut(s) 359
AvaII GGWCC 2 cut(s) 902, 1324
BaeGI GKGCMC 1 cut(s) 853
BanI GGYRCC 1 cut(s) 394
BanII GRGCYC 1 cut(s) 1333
Bbv12I GWGCWC 4 cut(s) 499, 826, 853, 1333
BbvI GCAGC 3 cut(s) 61, 319, 890
BccI CCATC 4 cut(s) 69, 674, 797, 1363
BciT130I CCWGG 4 cut(s) 342, 539, 1038, 1201
BclI TGATCA 1 cut(s) 799
BcoDI GTCTC 4 cut(s) 25, 44, 62, 1291
BfaI CTAG 3 cut(s) 54, 846, 1181
BfmI CTRYAG 1 cut(s) 981
BfoI RGCGCY 1 cut(s) 536
BisI GCNGC 5 cut(s) 50, 333, 879, 882, 1401
BlsI GCNGC 5 cut(s) 51, 334, 880, 883, 1402
BmcAI AGTACT 1 cut(s) 593
Bme1390I CCNGG 4 cut(s) 342, 539, 1038, 1201
Bme18I GGWCC 2 cut(s) 902, 1324
BmeT110I CYCGRG 1 cut(s) 359
BmgBI CACGTC 1 cut(s) 38
BmgT120I GGNCC 5 cut(s) 364, 902, 1203, 1324, 1353
BmiI GGNNCC 3 cut(s) 396, 600, 1325
BmrFI CCNGG 4 cut(s) 342, 539, 1038, 1201
BmrI ACTGGG 1 cut(s) 604
BmsI GCATC 3 cut(s) 406, 469, 1204
BmuI ACTGGG 1 cut(s) 604
BpmI CTGGAG 1 cut(s) 521
BpuEI CTTGAG 1 cut(s) 1273
BsaBI GATNNNNATC 1 cut(s) 864
BsaHI GRCGYC 1 cut(s) 1284
BsaJI CCNNGG 3 cut(s) 360, 1048, 1199
Bsc4I CCNNNNNNNGG 4 cut(s) 75, 278, 911, 1043
Bse118I RCCGGY 2 cut(s) 640, 830
Bse1I ACTGG 2 cut(s) 526, 599
Bse8I GATNNNNATC 1 cut(s) 864
BseBI CCWGG 4 cut(s) 342, 539, 1038, 1201
BseDI CCNNGG 3 cut(s) 360, 1048, 1199
BseGI GGATG 3 cut(s) 499, 685, 789
BseJI GATNNNNATC 1 cut(s) 864
BseLI CCNNNNNNNGG 4 cut(s) 75, 278, 911, 1043
BseMII CTCAG 3 cut(s) 131, 1245, 1325
BseNI ACTGG 2 cut(s) 526, 599
BseRI GAGGAG 2 cut(s) 85, 451
BseSI GKGCMC 1 cut(s) 853
BseXI GCAGC 3 cut(s) 61, 319, 890
Bsh1236I CGCG 1 cut(s) 15
BshFI GGCC 7 cut(s) 45, 366, 473, 834, 1047, 1204, 1354
BshNI GGYRCC 1 cut(s) 394
BsiHKAI GWGCWC 4 cut(s) 499, 826, 853, 1333
BsiHKCI CYCGRG 1 cut(s) 359
BsiSI CCGG 2 cut(s) 641, 831
BslFI GGGAC 1 cut(s) 1337
BslI CCNNNNNNNGG 4 cut(s) 75, 278, 911, 1043
BsmAI GTCTC 4 cut(s) 25, 44, 62, 1291
BsmBI CGTCTC 2 cut(s) 44, 1291
BsmFI GGGAC 1 cut(s) 1337
BsmI GAATGC 1 cut(s) 317
BsnI GGCC 7 cut(s) 45, 366, 473, 834, 1047, 1204, 1354
BsoBI CYCGRG 1 cut(s) 359
Bsp1286I GDGCHC 4 cut(s) 499, 826, 853, 1333
Bsp143I GATC 7 cut(s) 100, 268, 751, 799, 859, 1069, 1120
Bsp19I CCATGG 1 cut(s) 1048
BspACI CCGC 3 cut(s) 15, 810, 881
BspANI GGCC 7 cut(s) 45, 366, 473, 834, 1047, 1204, 1354
BspCNI CTCAG 3 cut(s) 130, 1246, 1324
BspFNI CGCG 1 cut(s) 15
BspHI TCATGA 1 cut(s) 802
BspLI GGNNCC 3 cut(s) 396, 600, 1325
BspPI GGATC 4 cut(s) 263, 854, 1064, 1115
BspT107I GGYRCC 1 cut(s) 394
BsrFI RCCGGY 2 cut(s) 640, 830
BsrI ACTGG 2 cut(s) 526, 599
BssAI RCCGGY 2 cut(s) 640, 830
BssECI CCNNGG 3 cut(s) 360, 1048, 1199
BssMI GATC 7 cut(s) 100, 268, 751, 799, 859, 1069, 1120
BssNI GRCGYC 1 cut(s) 1284
BssT1I CCWWGG 1 cut(s) 1048
Bst2UI CCWGG 4 cut(s) 342, 539, 1038, 1201
Bst4CI ACNGT 5 cut(s) 205, 855, 1022, 1233, 1273
BstACI GRCGYC 1 cut(s) 1284
BstAPI GCANNNNNTGC 1 cut(s) 728
BstC8I GCNNGC 1 cut(s) 47
BstDEI CTNAG 4 cut(s) 117, 620, 1254, 1311
BstDSI CCRYGG 1 cut(s) 1048
BstF5I GGATG 3 cut(s) 499, 685, 789
BstFNI CGCG 1 cut(s) 15
BstH2I RGCGCY 1 cut(s) 536
BstHHI GCGC 2 cut(s) 15, 535
BstKTI GATC 7 cut(s) 103, 271, 754, 802, 862, 1072, 1123
BstMAI GTCTC 4 cut(s) 25, 44, 62, 1291
BstMBI GATC 7 cut(s) 100, 268, 751, 799, 859, 1069, 1120
BstMWI GCNNNNNNNGC 4 cut(s) 85, 479, 728, 775
BstNI CCWGG 4 cut(s) 342, 539, 1038, 1201
BstNSI RCATGY 2 cut(s) 1086, 1114
BstSCI CCNGG 4 cut(s) 340, 537, 1036, 1199
BstSFI CTRYAG 1 cut(s) 981
BstSLI GKGCMC 1 cut(s) 853
BstUI CGCG 1 cut(s) 15
BstV1I GCAGC 3 cut(s) 61, 319, 890
BstX2I RGATCY 2 cut(s) 859, 1069
BstYI RGATCY 2 cut(s) 859, 1069
BsuRI GGCC 7 cut(s) 45, 366, 473, 834, 1047, 1204, 1354
BtgI CCRYGG 1 cut(s) 1048
BtrI CACGTC 1 cut(s) 38
BtsCI GGATG 3 cut(s) 499, 685, 789
BtsIMutI CAGTG 4 cut(s) 201, 826, 851, 1027
Cac8I GCNNGC 1 cut(s) 47
CciI TCATGA 1 cut(s) 802
CfoI GCGC 2 cut(s) 15, 535
Cfr10I RCCGGY 2 cut(s) 640, 830
Cfr13I GGNCC 5 cut(s) 364, 902, 1203, 1324, 1353
CseI GACGC 2 cut(s) 140, 1273
Csp6I GTAC 4 cut(s) 185, 395, 592, 1229
CviAII CATG 6 cut(s) 176, 803, 911, 1049, 1083, 1111
CviQI GTAC 4 cut(s) 185, 395, 592, 1229
DdeI CTNAG 4 cut(s) 117, 620, 1254, 1311
DpnI GATC 7 cut(s) 102, 270, 753, 801, 861, 1071, 1122
DpnII GATC 7 cut(s) 100, 268, 751, 799, 859, 1069, 1120
EaeI YGGCCR 3 cut(s) 43, 832, 1045
Ecl136II GAGCTC 1 cut(s) 1331
Eco130I CCWWGG 1 cut(s) 1048
Eco24I GRGCYC 1 cut(s) 1333
Eco47I GGWCC 2 cut(s) 902, 1324
Eco53kI GAGCTC 1 cut(s) 1331
Eco57I CTGAAG 2 cut(s) 176, 185
Eco88I CYCGRG 1 cut(s) 359
EcoICRI GAGCTC 1 cut(s) 1331
EcoO109I RGGNCCY 1 cut(s) 364
EcoRI GAATTC 1 cut(s) 551
EcoRII CCWGG 4 cut(s) 340, 537, 1036, 1199
EcoT14I CCWWGG 1 cut(s) 1048
EcoT22I ATGCAT 1 cut(s) 421
EcoT38I GRGCYC 1 cut(s) 1333
ErhI CCWWGG 1 cut(s) 1048
Esp3I CGTCTC 2 cut(s) 44, 1291
FaeI CATG 6 cut(s) 179, 806, 914, 1052, 1086, 1114
FalI AAGNNNNNCTT 2 cut(s) 921, 953
FaqI GGGAC 1 cut(s) 1337
FatI CATG 6 cut(s) 175, 802, 910, 1048, 1082, 1110
FauI CCCGC 1 cut(s) 803
FauNDI CATATG 1 cut(s) 565
FbaI TGATCA 1 cut(s) 799
Fnu4HI GCNGC 5 cut(s) 50, 333, 879, 882, 1401
FokI GGATG 3 cut(s) 486, 692, 776
FriOI GRGCYC 1 cut(s) 1333
Fsp4HI GCNGC 5 cut(s) 50, 333, 879, 882, 1401
FspBI CTAG 3 cut(s) 54, 846, 1181
GlaI GCGC 2 cut(s) 14, 534
GluI GCNGC 5 cut(s) 50, 333, 879, 882, 1401
GsuI CTGGAG 1 cut(s) 521
HaeII RGCGCY 1 cut(s) 536
HaeIII GGCC 7 cut(s) 45, 366, 473, 834, 1047, 1204, 1354
HapII CCGG 2 cut(s) 641, 831
HgaI GACGC 2 cut(s) 140, 1273
HhaI GCGC 2 cut(s) 15, 535
Hin1I GRCGYC 1 cut(s) 1284
Hin1II CATG 6 cut(s) 179, 806, 914, 1052, 1086, 1114
Hin6I GCGC 2 cut(s) 13, 533
HinP1I GCGC 2 cut(s) 13, 533
HindIII AAGCTT 1 cut(s) 1145
HinfI GANTC 8 cut(s) 65, 133, 283, 439, 508, 614, 704, 1373
HpaII CCGG 2 cut(s) 641, 831
HphI GGTGA 3 cut(s) 226, 359, 778
Hpy166II GTNNAC 5 cut(s) 35, 350, 851, 905, 1229
Hpy188I TCNGA 6 cut(s) 74, 100, 156, 627, 859, 1089
Hpy8I GTNNAC 5 cut(s) 35, 350, 851, 905, 1229
HpyAV CCTTC 9 cut(s) 118, 119, 160, 377, 553, 660, 800, 988, 1021
HpyCH4III ACNGT 5 cut(s) 205, 855, 1022, 1233, 1273
HpyCH4IV ACGT 2 cut(s) 37, 1209
HpyF10VI GCNNNNNNNGC 4 cut(s) 85, 479, 728, 775
HpyF3I CTNAG 4 cut(s) 117, 620, 1254, 1311
HpySE526I ACGT 2 cut(s) 37, 1209
Hsp92I GRCGYC 1 cut(s) 1284
Hsp92II CATG 6 cut(s) 179, 806, 914, 1052, 1086, 1114
HspAI GCGC 2 cut(s) 13, 533
KpnI GGTACC 1 cut(s) 398
Ksp22I TGATCA 1 cut(s) 799
Kzo9I GATC 7 cut(s) 100, 268, 751, 799, 859, 1069, 1120
LmnI GCTCC 6 cut(s) 33, 148, 406, 494, 540, 598
Lsp1109I GCAGC 3 cut(s) 61, 319, 890
LweI GCATC 3 cut(s) 406, 469, 1204
MaeI CTAG 3 cut(s) 54, 846, 1181
MaeII ACGT 2 cut(s) 37, 1209
MaeIII GTNAC 4 cut(s) 784, 1363, 1374, 1385
MalI GATC 7 cut(s) 102, 270, 753, 801, 861, 1071, 1122
MboI GATC 7 cut(s) 100, 268, 751, 799, 859, 1069, 1120
MboII GAAGA 1 cut(s) 169
MfeI CAATTG 1 cut(s) 188
MflI RGATCY 2 cut(s) 859, 1069
MhlI GDGCHC 4 cut(s) 499, 826, 853, 1333
MluCI AATT 7 cut(s) 128, 188, 303, 431, 512, 551, 724
MlyI GAGTC 4 cut(s) 448, 502, 698, 1382
MmeI TCCRAC 1 cut(s) 472
Mph1103I ATGCAT 1 cut(s) 421
MroXI GAANNNNTTC 2 cut(s) 132, 1241
MseI TTAA 4 cut(s) 383, 887, 1016, 1191
MslI CAYNNNNRTG 1 cut(s) 1224
MspA1I CMGCKG 3 cut(s) 332, 881, 1135
MspI CCGG 2 cut(s) 641, 831
MspR9I CCNGG 4 cut(s) 342, 539, 1038, 1201
MunI CAATTG 1 cut(s) 188
Mva1269I GAATGC 1 cut(s) 317
MvaI CCWGG 4 cut(s) 342, 539, 1038, 1201
MvnI CGCG 1 cut(s) 15
MwoI GCNNNNNNNGC 4 cut(s) 85, 479, 728, 775
NcoI CCATGG 1 cut(s) 1048
NdeI CATATG 1 cut(s) 565
NdeII GATC 7 cut(s) 100, 268, 751, 799, 859, 1069, 1120
NlaIII CATG 6 cut(s) 179, 806, 914, 1052, 1086, 1114
NlaIV GGNNCC 3 cut(s) 396, 600, 1325
NmeAIII GCCGAG 1 cut(s) 21
NmuCI GTSAC 2 cut(s) 784, 1374
NsiI ATGCAT 1 cut(s) 421
NspI RCATGY 2 cut(s) 1086, 1114
PagI TCATGA 1 cut(s) 802
PciI ACATGT 1 cut(s) 1082
PctI GAATGC 1 cut(s) 317
PdmI GAANNNNTTC 2 cut(s) 132, 1241
PfeI GAWTC 4 cut(s) 65, 133, 283, 614
PflMI CCANNNNNTGG 1 cut(s) 911
PkrI GCNGC 5 cut(s) 51, 334, 880, 883, 1402
PleI GAGTC 4 cut(s) 447, 502, 698, 1381
PpsI GAGTC 4 cut(s) 447, 502, 698, 1381
PscI ACATGT 1 cut(s) 1082
Psp124BI GAGCTC 1 cut(s) 1333
Psp6I CCWGG 4 cut(s) 340, 537, 1036, 1199
PspGI CCWGG 4 cut(s) 340, 537, 1036, 1199
PspN4I GGNNCC 3 cut(s) 396, 600, 1325
PspPI GGNCC 5 cut(s) 364, 902, 1203, 1324, 1353
PsuI RGATCY 2 cut(s) 859, 1069
PvuII CAGCTG 2 cut(s) 332, 1135
RsaI GTAC 4 cut(s) 186, 396, 593, 1230
RsaNI GTAC 4 cut(s) 185, 395, 592, 1229
RseI CAYNNNNRTG 1 cut(s) 1224
SacI GAGCTC 1 cut(s) 1333
SaqAI TTAA 4 cut(s) 383, 887, 1016, 1191
SatI GCNGC 5 cut(s) 50, 333, 879, 882, 1401
Sau3AI GATC 7 cut(s) 100, 268, 751, 799, 859, 1069, 1120
Sau96I GGNCC 5 cut(s) 364, 902, 1203, 1324, 1353
ScaI AGTACT 1 cut(s) 593
SchI GAGTC 4 cut(s) 448, 502, 698, 1382
ScrFI CCNGG 4 cut(s) 342, 539, 1038, 1201
SduI GDGCHC 4 cut(s) 499, 826, 853, 1333
SfaNI GCATC 3 cut(s) 406, 469, 1204
SfcI CTRYAG 1 cut(s) 981
SinI GGWCC 2 cut(s) 902, 1324
SmiMI CAYNNNNRTG 1 cut(s) 1224
SmlI CTYRAG 1 cut(s) 1288
SmoI CTYRAG 1 cut(s) 1288
Sse9I AATT 7 cut(s) 128, 188, 303, 431, 512, 551, 724
SsiI CCGC 3 cut(s) 15, 810, 881
SspMI CTAG 3 cut(s) 54, 846, 1181
SstI GAGCTC 1 cut(s) 1333
StyD4I CCNGG 4 cut(s) 340, 537, 1036, 1199
StyI CCWWGG 1 cut(s) 1048
TaaI ACNGT 5 cut(s) 205, 855, 1022, 1233, 1273
TaiI ACGT 2 cut(s) 40, 1212
TaqI TCGA 3 cut(s) 105, 557, 664
TaqII GACCGA 1 cut(s) 1341
TasI AATT 7 cut(s) 128, 188, 303, 431, 512, 551, 724
TatI WGTACW 3 cut(s) 184, 591, 1228
TauI GCSGC 1 cut(s) 884
TfiI GAWTC 4 cut(s) 65, 133, 283, 614
Tru1I TTAA 4 cut(s) 383, 887, 1016, 1191
Tru9I TTAA 4 cut(s) 383, 887, 1016, 1191
TscAI CASTG 4 cut(s) 208, 826, 858, 1027
TseFI GTSAC 2 cut(s) 784, 1374
TseI GCWGC 4 cut(s) 49, 332, 878, 1400
Tsp45I GTSAC 2 cut(s) 784, 1374
TspDTI ATGAA 5 cut(s) 101, 819, 861, 899, 975
TspGWI ACGGA 3 cut(s) 20, 50, 58
TspRI CASTG 4 cut(s) 208, 826, 858, 1027
Van91I CCANNNNNTGG 1 cut(s) 911
VneI GTGCAC 1 cut(s) 849
VpaK11BI GGWCC 2 cut(s) 902, 1324
XapI RAATTY 2 cut(s) 551, 724
XceI RCATGY 2 cut(s) 1086, 1114
XmnI GAANNNNTTC 2 cut(s) 132, 1241
XspI CTAG 3 cut(s) 54, 846, 1181
ZrmI AGTACT 1 cut(s) 593
Zsp2I ATGCAT 1 cut(s) 421
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.