Rmu_sc0000035.1_g000001

citrate synthase

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000035.1
Physical Location & Seq
Forward (+)
1737 .. 9458
7722 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000035.1_g000001.1.cds

Sequence Viewer

Length: 1272 bp
atgtccctctccctcacctccgccgaagcctccttaaatgatctaccaaaagcttcaagaccagtacaggagcgtctgaagaaactgaaggcagagcatggaaaagtacaattgggcaatatcactgttgatatggtgattggtggaatgaggggaatgacggggttgctgtgggaaacctctttacttgatccagatgaggggattcgctttaggggtttgtcaattccagaatgccagaaagtattaccagctgcaaagcctggtggtgaacctttgcccgagggccttctctggctacttttaacaggaaaggtaccaagcaaggagcaagtagatgcattatccagcgaattgaggagtcgtgccaaagttccagattatgtgttcaaggccattgatgctctgcctgttggagcacatccaatgactcaatttgcaactggtgttatggcgctccaggttgagagtgaattctcgaaggcatatgacaagggaataccaaagtcaaagtactgggagccaacttatgaggattcacttagtctgattgcacaagtgccggtggtagcttcctatgtgtatcgaaggatatataaggatggaaaaataatacccgttgatgactctctggattatggggcaaattttgcacatttgttaggatttgacgatcacaaaatgcaagagcttatgaggctttatgtcaccatccatagtgatcatgaaggcgggaatgtcagtgctcataccggccatttagttgctagtgcactgtcagatccttatctttcatttgcagcggcattaaatggtttagctggtccacttcatggtttggctaatcaggaagttttgctttggataaaatctgtggtagatgaatgtggagagaacataactacagagcagttgaaggactatatatggaaaacattaaacagtgggaaggttgttcctggtttcggccatggagttttgcgtaaaacagatccacgatatacatgtcagagggagtttgcattgaagcacatgcctgatgatcctctgtttcagctggtgtccaagctttatgatgttgtgcctcccatacttaccgaactaggcaaggttaaaaatccctggcccaacgtagatgctcatagtggtgtactgttgaaccacttcggtttgactgaggcaagatattttactgttctttttggcgtctcaaggagtatcgggattggctctcaggttgatatgggaccgagctcttggtctgcctcttga

Protein Analysis

423

Amino Acids

46.36

Weight (kDa)

6.12

Isoelectric Point (pI)

28.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 316
AccB1I GGYRCC 1 cut(s) 316
AccB7I CCANNNNNTGG 1 cut(s) 833
AciI CCGC 3 cut(s) 21, 732, 803
AclWI GGATC 4 cut(s) 185, 776, 986, 1037
AcoI YGGCCR 2 cut(s) 754, 967
AcsI RAATTY 2 cut(s) 473, 646
AcuI CTGAAG 2 cut(s) 98, 107
AcyI GRCGYC 1 cut(s) 1206
AfaI GTAC 5 cut(s) 66, 108, 318, 515, 1152
AfiI CCNNNNNNNGG 3 cut(s) 200, 833, 965
AflIII ACRYGT 1 cut(s) 1004
AgsI TTSAA 5 cut(s) 57, 391, 916, 1027, 1159
AjnI CCWGG 4 cut(s) 262, 459, 958, 1121
AluBI AGCT 8 cut(s) 53, 254, 572, 691, 821, 1057, 1069, 1254
AluI AGCT 8 cut(s) 53, 254, 572, 691, 821, 1057, 1069, 1254
Alw21I GWGCWC 4 cut(s) 421, 748, 775, 1256
Alw26I GTCTC 1 cut(s) 1213
Alw44I GTGCAC 1 cut(s) 771
AlwI GGATC 4 cut(s) 185, 776, 986, 1037
Ama87I CYCGRG 1 cut(s) 281
AoxI GGCC 5 cut(s) 286, 393, 754, 967, 1124
ApaLI GTGCAC 1 cut(s) 771
ApeKI GCWGC 2 cut(s) 254, 800
ApoI RAATTY 2 cut(s) 473, 646
Asp700I GAANNNNTTC 1 cut(s) 1163
Asp718I GGTACC 1 cut(s) 316
AspLEI GCGC 1 cut(s) 457
AspS9I GGNCC 4 cut(s) 286, 824, 1125, 1247
AsuHPI GGTGA 4 cut(s) 7, 148, 281, 700
AvaI CYCGRG 1 cut(s) 281
AvaII GGWCC 2 cut(s) 824, 1247
BaeGI GKGCMC 1 cut(s) 775
BanI GGYRCC 1 cut(s) 316
BanII GRGCYC 1 cut(s) 1256
Bbv12I GWGCWC 4 cut(s) 421, 748, 775, 1256
BbvI GCAGC 2 cut(s) 241, 812
BccI CCATC 2 cut(s) 596, 719
BciT130I CCWGG 4 cut(s) 264, 461, 960, 1123
BclI TGATCA 1 cut(s) 721
BcoDI GTCTC 1 cut(s) 1213
BfaI CTAG 2 cut(s) 768, 1103
BfmI CTRYAG 1 cut(s) 903
BfoI RGCGCY 1 cut(s) 458
BisI GCNGC 3 cut(s) 255, 801, 804
BlsI GCNGC 3 cut(s) 256, 802, 805
BmcAI AGTACT 1 cut(s) 515
Bme1390I CCNGG 4 cut(s) 264, 461, 960, 1123
Bme18I GGWCC 2 cut(s) 824, 1247
BmeT110I CYCGRG 1 cut(s) 281
BmgT120I GGNCC 4 cut(s) 286, 824, 1125, 1247
BmiI GGNNCC 3 cut(s) 318, 522, 1248
BmrFI CCNGG 4 cut(s) 264, 461, 960, 1123
BmrI ACTGGG 1 cut(s) 526
BmsI GCATC 3 cut(s) 328, 391, 1126
BmuI ACTGGG 1 cut(s) 526
BpmI CTGGAG 1 cut(s) 443
BpuEI CTTGAG 1 cut(s) 1195
BsaBI GATNNNNATC 1 cut(s) 786
BsaHI GRCGYC 1 cut(s) 1206
BsaJI CCNNGG 3 cut(s) 282, 970, 1121
Bsc4I CCNNNNNNNGG 3 cut(s) 200, 833, 965
Bse118I RCCGGY 2 cut(s) 562, 752
Bse1I ACTGG 3 cut(s) 62, 448, 521
Bse8I GATNNNNATC 1 cut(s) 786
BseBI CCWGG 4 cut(s) 264, 461, 960, 1123
BseDI CCNNGG 3 cut(s) 282, 970, 1121
BseGI GGATG 3 cut(s) 421, 607, 711
BseJI GATNNNNATC 1 cut(s) 786
BseLI CCNNNNNNNGG 3 cut(s) 200, 833, 965
BseMII CTCAG 2 cut(s) 1167, 1247
BseNI ACTGG 3 cut(s) 62, 448, 521
BseRI GAGGAG 1 cut(s) 373
BseSI GKGCMC 1 cut(s) 775
BseXI GCAGC 2 cut(s) 241, 812
BshFI GGCC 5 cut(s) 288, 395, 756, 969, 1126
BshNI GGYRCC 1 cut(s) 316
BsiHKAI GWGCWC 4 cut(s) 421, 748, 775, 1256
BsiHKCI CYCGRG 1 cut(s) 281
BsiSI CCGG 2 cut(s) 563, 753
BslFI GGGAC 1 cut(s) 1260
BslI CCNNNNNNNGG 3 cut(s) 200, 833, 965
BsmAI GTCTC 1 cut(s) 1213
BsmBI CGTCTC 1 cut(s) 1213
BsmFI GGGAC 1 cut(s) 1260
BsmI GAATGC 1 cut(s) 239
BsnI GGCC 5 cut(s) 288, 395, 756, 969, 1126
BsoBI CYCGRG 1 cut(s) 281
Bsp1286I GDGCHC 4 cut(s) 421, 748, 775, 1256
Bsp143I GATC 7 cut(s) 40, 190, 673, 721, 781, 991, 1042
Bsp19I CCATGG 1 cut(s) 970
BspACI CCGC 3 cut(s) 21, 732, 803
BspANI GGCC 5 cut(s) 288, 395, 756, 969, 1126
BspCNI CTCAG 2 cut(s) 1168, 1246
BspHI TCATGA 1 cut(s) 724
BspLI GGNNCC 3 cut(s) 318, 522, 1248
BspPI GGATC 4 cut(s) 185, 776, 986, 1037
BspT107I GGYRCC 1 cut(s) 316
BsrFI RCCGGY 2 cut(s) 562, 752
BsrI ACTGG 3 cut(s) 62, 448, 521
BssAI RCCGGY 2 cut(s) 562, 752
BssECI CCNNGG 3 cut(s) 282, 970, 1121
BssMI GATC 7 cut(s) 40, 190, 673, 721, 781, 991, 1042
BssNI GRCGYC 1 cut(s) 1206
BssT1I CCWWGG 1 cut(s) 970
Bst2UI CCWGG 4 cut(s) 264, 461, 960, 1123
Bst4CI ACNGT 5 cut(s) 127, 777, 944, 1155, 1195
BstACI GRCGYC 1 cut(s) 1206
BstAPI GCANNNNNTGC 1 cut(s) 650
BstDEI CTNAG 3 cut(s) 542, 1176, 1233
BstDSI CCRYGG 1 cut(s) 970
BstF5I GGATG 3 cut(s) 421, 607, 711
BstH2I RGCGCY 1 cut(s) 458
BstHHI GCGC 1 cut(s) 457
BstKTI GATC 7 cut(s) 43, 193, 676, 724, 784, 994, 1045
BstMAI GTCTC 1 cut(s) 1213
BstMBI GATC 7 cut(s) 40, 190, 673, 721, 781, 991, 1042
BstMWI GCNNNNNNNGC 3 cut(s) 401, 650, 697
BstNI CCWGG 4 cut(s) 264, 461, 960, 1123
BstNSI RCATGY 2 cut(s) 1008, 1036
BstSCI CCNGG 4 cut(s) 262, 459, 958, 1121
BstSFI CTRYAG 1 cut(s) 903
BstSLI GKGCMC 1 cut(s) 775
BstV1I GCAGC 2 cut(s) 241, 812
BstX2I RGATCY 2 cut(s) 781, 991
BstYI RGATCY 2 cut(s) 781, 991
BsuRI GGCC 5 cut(s) 288, 395, 756, 969, 1126
BtgI CCRYGG 1 cut(s) 970
BtsCI GGATG 3 cut(s) 421, 607, 711
BtsIMutI CAGTG 4 cut(s) 123, 748, 773, 949
CciI TCATGA 1 cut(s) 724
CfoI GCGC 1 cut(s) 457
Cfr10I RCCGGY 2 cut(s) 562, 752
Cfr13I GGNCC 4 cut(s) 286, 824, 1125, 1247
CseI GACGC 2 cut(s) 62, 1195
Csp6I GTAC 5 cut(s) 65, 107, 317, 514, 1151
CviAII CATG 6 cut(s) 98, 725, 833, 971, 1005, 1033
CviQI GTAC 5 cut(s) 65, 107, 317, 514, 1151
DdeI CTNAG 3 cut(s) 542, 1176, 1233
DpnI GATC 7 cut(s) 42, 192, 675, 723, 783, 993, 1044
DpnII GATC 7 cut(s) 40, 190, 673, 721, 781, 991, 1042
EaeI YGGCCR 2 cut(s) 754, 967
EciI GGCGGA 1 cut(s) 10
Ecl136II GAGCTC 1 cut(s) 1254
Eco130I CCWWGG 1 cut(s) 970
Eco24I GRGCYC 1 cut(s) 1256
Eco47I GGWCC 2 cut(s) 824, 1247
Eco53kI GAGCTC 1 cut(s) 1254
Eco57I CTGAAG 2 cut(s) 98, 107
Eco88I CYCGRG 1 cut(s) 281
EcoICRI GAGCTC 1 cut(s) 1254
EcoO109I RGGNCCY 1 cut(s) 286
EcoRI GAATTC 1 cut(s) 473
EcoRII CCWGG 4 cut(s) 262, 459, 958, 1121
EcoT14I CCWWGG 1 cut(s) 970
EcoT22I ATGCAT 1 cut(s) 343
EcoT38I GRGCYC 1 cut(s) 1256
ErhI CCWWGG 1 cut(s) 970
Esp3I CGTCTC 1 cut(s) 1213
FaeI CATG 6 cut(s) 101, 728, 836, 974, 1008, 1036
FalI AAGNNNNNCTT 2 cut(s) 843, 875
FaqI GGGAC 1 cut(s) 1260
FatI CATG 6 cut(s) 97, 724, 832, 970, 1004, 1032
FauI CCCGC 1 cut(s) 725
FauNDI CATATG 1 cut(s) 487
FbaI TGATCA 1 cut(s) 721
Fnu4HI GCNGC 3 cut(s) 255, 801, 804
FokI GGATG 3 cut(s) 408, 614, 698
FriOI GRGCYC 1 cut(s) 1256
Fsp4HI GCNGC 3 cut(s) 255, 801, 804
FspBI CTAG 2 cut(s) 768, 1103
GlaI GCGC 1 cut(s) 456
GluI GCNGC 3 cut(s) 255, 801, 804
GsuI CTGGAG 1 cut(s) 443
HaeII RGCGCY 1 cut(s) 458
HaeIII GGCC 5 cut(s) 288, 395, 756, 969, 1126
HapII CCGG 2 cut(s) 563, 753
HgaI GACGC 2 cut(s) 62, 1195
HhaI GCGC 1 cut(s) 457
Hin1I GRCGYC 1 cut(s) 1206
Hin1II CATG 6 cut(s) 101, 728, 836, 974, 1008, 1036
Hin6I GCGC 1 cut(s) 455
HinP1I GCGC 1 cut(s) 455
HindIII AAGCTT 2 cut(s) 51, 1067
HinfI GANTC 5 cut(s) 205, 361, 430, 536, 626
HpaII CCGG 2 cut(s) 563, 753
HphI GGTGA 4 cut(s) 7, 148, 281, 700
Hpy166II GTNNAC 4 cut(s) 272, 773, 827, 1151
Hpy188I TCNGA 4 cut(s) 78, 549, 781, 1011
Hpy8I GTNNAC 4 cut(s) 272, 773, 827, 1151
HpyAV CCTTC 7 cut(s) 82, 299, 475, 582, 722, 910, 943
HpyCH4III ACNGT 5 cut(s) 127, 777, 944, 1155, 1195
HpyCH4IV ACGT 1 cut(s) 1131
HpyCH4V TGCA 9 cut(s) 257, 341, 440, 554, 653, 685, 773, 800, 1022
HpyF10VI GCNNNNNNNGC 3 cut(s) 401, 650, 697
HpyF3I CTNAG 3 cut(s) 542, 1176, 1233
HpySE526I ACGT 1 cut(s) 1131
Hsp92I GRCGYC 1 cut(s) 1206
Hsp92II CATG 6 cut(s) 101, 728, 836, 974, 1008, 1036
HspAI GCGC 1 cut(s) 455
KpnI GGTACC 1 cut(s) 320
Ksp22I TGATCA 1 cut(s) 721
Kzo9I GATC 7 cut(s) 40, 190, 673, 721, 781, 991, 1042
LmnI GCTCC 5 cut(s) 70, 328, 416, 462, 520
Lsp1109I GCAGC 2 cut(s) 241, 812
LweI GCATC 3 cut(s) 328, 391, 1126
MaeI CTAG 2 cut(s) 768, 1103
MaeII ACGT 1 cut(s) 1131
MaeIII GTNAC 1 cut(s) 706
MalI GATC 7 cut(s) 42, 192, 675, 723, 783, 993, 1044
MboI GATC 7 cut(s) 40, 190, 673, 721, 781, 991, 1042
MboII GAAGA 1 cut(s) 91
MfeI CAATTG 1 cut(s) 110
MflI RGATCY 2 cut(s) 781, 991
MhlI GDGCHC 4 cut(s) 421, 748, 775, 1256
MluCI AATT 6 cut(s) 110, 225, 353, 434, 473, 646
MlyI GAGTC 3 cut(s) 370, 424, 620
MmeI TCCRAC 1 cut(s) 394
Mph1103I ATGCAT 1 cut(s) 343
MroXI GAANNNNTTC 1 cut(s) 1163
MseI TTAA 5 cut(s) 35, 305, 809, 938, 1113
MslI CAYNNNNRTG 1 cut(s) 1146
MspA1I CMGCKG 3 cut(s) 254, 803, 1057
MspI CCGG 2 cut(s) 563, 753
MspR9I CCNGG 4 cut(s) 264, 461, 960, 1123
MunI CAATTG 1 cut(s) 110
Mva1269I GAATGC 1 cut(s) 239
MvaI CCWGG 4 cut(s) 264, 461, 960, 1123
MwoI GCNNNNNNNGC 3 cut(s) 401, 650, 697
NcoI CCATGG 1 cut(s) 970
NdeI CATATG 1 cut(s) 487
NdeII GATC 7 cut(s) 40, 190, 673, 721, 781, 991, 1042
NlaIII CATG 6 cut(s) 101, 728, 836, 974, 1008, 1036
NlaIV GGNNCC 3 cut(s) 318, 522, 1248
NmuCI GTSAC 1 cut(s) 706
NsiI ATGCAT 1 cut(s) 343
NspI RCATGY 2 cut(s) 1008, 1036
PagI TCATGA 1 cut(s) 724
PciI ACATGT 1 cut(s) 1004
PctI GAATGC 1 cut(s) 239
PdmI GAANNNNTTC 1 cut(s) 1163
PfeI GAWTC 2 cut(s) 205, 536
PflMI CCANNNNNTGG 1 cut(s) 833
PkrI GCNGC 3 cut(s) 256, 802, 805
PleI GAGTC 3 cut(s) 369, 424, 620
PpsI GAGTC 3 cut(s) 369, 424, 620
PscI ACATGT 1 cut(s) 1004
Psp124BI GAGCTC 1 cut(s) 1256
Psp6I CCWGG 4 cut(s) 262, 459, 958, 1121
PspGI CCWGG 4 cut(s) 262, 459, 958, 1121
PspN4I GGNNCC 3 cut(s) 318, 522, 1248
PspPI GGNCC 4 cut(s) 286, 824, 1125, 1247
PsuI RGATCY 2 cut(s) 781, 991
PvuII CAGCTG 2 cut(s) 254, 1057
RsaI GTAC 5 cut(s) 66, 108, 318, 515, 1152
RsaNI GTAC 5 cut(s) 65, 107, 317, 514, 1151
RseI CAYNNNNRTG 1 cut(s) 1146
SacI GAGCTC 1 cut(s) 1256
SaqAI TTAA 5 cut(s) 35, 305, 809, 938, 1113
SatI GCNGC 3 cut(s) 255, 801, 804
Sau3AI GATC 7 cut(s) 40, 190, 673, 721, 781, 991, 1042
Sau96I GGNCC 4 cut(s) 286, 824, 1125, 1247
ScaI AGTACT 1 cut(s) 515
SchI GAGTC 3 cut(s) 370, 424, 620
ScrFI CCNGG 4 cut(s) 264, 461, 960, 1123
SduI GDGCHC 4 cut(s) 421, 748, 775, 1256
SfaNI GCATC 3 cut(s) 328, 391, 1126
SfcI CTRYAG 1 cut(s) 903
SinI GGWCC 2 cut(s) 824, 1247
SmiMI CAYNNNNRTG 1 cut(s) 1146
SmlI CTYRAG 1 cut(s) 1210
SmoI CTYRAG 1 cut(s) 1210
Sse9I AATT 6 cut(s) 110, 225, 353, 434, 473, 646
SsiI CCGC 3 cut(s) 21, 732, 803
SspMI CTAG 2 cut(s) 768, 1103
SstI GAGCTC 1 cut(s) 1256
StyD4I CCNGG 4 cut(s) 262, 459, 958, 1121
StyI CCWWGG 1 cut(s) 970
TaaI ACNGT 5 cut(s) 127, 777, 944, 1155, 1195
TaiI ACGT 1 cut(s) 1134
TaqI TCGA 2 cut(s) 479, 586
TaqII GACCGA 1 cut(s) 1264
TasI AATT 6 cut(s) 110, 225, 353, 434, 473, 646
TatI WGTACW 4 cut(s) 64, 106, 513, 1150
TauI GCSGC 1 cut(s) 806
TfiI GAWTC 2 cut(s) 205, 536
Tru1I TTAA 5 cut(s) 35, 305, 809, 938, 1113
Tru9I TTAA 5 cut(s) 35, 305, 809, 938, 1113
TscAI CASTG 4 cut(s) 130, 748, 780, 949
TseFI GTSAC 1 cut(s) 706
TseI GCWGC 2 cut(s) 254, 800
Tsp45I GTSAC 1 cut(s) 706
TspDTI ATGAA 4 cut(s) 741, 783, 821, 897
TspRI CASTG 4 cut(s) 130, 748, 780, 949
Van91I CCANNNNNTGG 1 cut(s) 833
VneI GTGCAC 1 cut(s) 771
VpaK11BI GGWCC 2 cut(s) 824, 1247
XapI RAATTY 2 cut(s) 473, 646
XceI RCATGY 2 cut(s) 1008, 1036
XmnI GAANNNNTTC 1 cut(s) 1163
XspI CTAG 2 cut(s) 768, 1103
ZrmI AGTACT 1 cut(s) 515
Zsp2I ATGCAT 1 cut(s) 343
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.